FC932427

Overview
NameFC932427
Unique NameFC932427
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length563
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932427 vs. ExPASy Swiss-Prot
Match: RBM38_CHICK (RNA-binding protein 38 OS=Gallus gallus GN=RBM38 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.886e-11
Identity = 35/77 (45.45%), Postives = 50/77 (64.94%), Query Frame = 3
Query:   36 SKIYVGNLSWHTSDESLRAAFGEFGNIVDSIVMVDRETGRSRGFGFVTFSSXXXXXXXINALNEQDLDGRRIRVNLA 266
            +KI+VG L +HT+D SLR  F  FG+I +++V+ DR+TG+SRG+GFVT +            N   +DGR+  VNLA
Sbjct:   11 TKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPN-PIIDGRKANVNLA 86          
BLAST of FC932427 vs. ExPASy Swiss-Prot
Match: RBM24_XENTR (RNA-binding protein 24 OS=Xenopus tropicalis GN=rbm24 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.886e-11
Identity = 35/77 (45.45%), Postives = 50/77 (64.94%), Query Frame = 3
Query:   36 SKIYVGNLSWHTSDESLRAAFGEFGNIVDSIVMVDRETGRSRGFGFVTFSSXXXXXXXINALNEQDLDGRRIRVNLA 266
            +KI+VG L +HT+D SLR  F  FG+I +++V+ DR+TG+SRG+GFVT +            N   +DGR+  VNLA
Sbjct:   11 TKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPN-PIIDGRKANVNLA 86          
BLAST of FC932427 vs. ExPASy Swiss-Prot
Match: RBM24_CHICK (RNA-binding protein 24 OS=Gallus gallus GN=RBM24 PE=2 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 1.886e-11
Identity = 35/77 (45.45%), Postives = 50/77 (64.94%), Query Frame = 3
Query:   36 SKIYVGNLSWHTSDESLRAAFGEFGNIVDSIVMVDRETGRSRGFGFVTFSSXXXXXXXINALNEQDLDGRRIRVNLA 266
            +KI+VG L +HT+D SLR  F  FG+I +++V+ DR+TG+SRG+GFVT +            N   +DGR+  VNLA
Sbjct:   11 TKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPN-PIIDGRKANVNLA 86          
BLAST of FC932427 vs. ExPASy Swiss-Prot
Match: RB24B_XENLA (RNA-binding protein 24-B OS=Xenopus laevis GN=rbm24-B PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.886e-11
Identity = 35/77 (45.45%), Postives = 50/77 (64.94%), Query Frame = 3
Query:   36 SKIYVGNLSWHTSDESLRAAFGEFGNIVDSIVMVDRETGRSRGFGFVTFSSXXXXXXXINALNEQDLDGRRIRVNLA 266
            +KI+VG L +HT+D SLR  F  FG+I +++V+ DR+TG+SRG+GFVT +            N   +DGR+  VNLA
Sbjct:   11 TKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPN-PIIDGRKANVNLA 86          
BLAST of FC932427 vs. ExPASy Swiss-Prot
Match: RB24A_XENLA (RNA-binding protein 24-A OS=Xenopus laevis GN=rbm24-A PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.886e-11
Identity = 35/77 (45.45%), Postives = 50/77 (64.94%), Query Frame = 3
Query:   36 SKIYVGNLSWHTSDESLRAAFGEFGNIVDSIVMVDRETGRSRGFGFVTFSSXXXXXXXINALNEQDLDGRRIRVNLA 266
            +KI+VG L +HT+D SLR  F  FG+I +++V+ DR+TG+SRG+GFVT +            N   +DGR+  VNLA
Sbjct:   11 TKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPN-PIIDGRKANVNLA 86          
BLAST of FC932427 vs. ExPASy Swiss-Prot
Match: HNRPG_MOUSE (Heterogeneous nuclear ribonucleoprotein G OS=Mus musculus GN=Rbmx PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.886e-11
Identity = 32/76 (42.11%), Postives = 49/76 (64.47%), Query Frame = 3
Query:   39 KIYVGNLSWHTSDESLRAAFGEFGNIVDSIVMVDRETGRSRGFGFVTFSSXXXXXXXINALNEQDLDGRRIRVNLA 266
            K+++G L+  T++++L A FG++G IV+ I+M DRET +SRGF FVT  S          +N + LDG+ I+V  A
Sbjct:    9 KLFIGGLNTETNEKALEAVFGKYGRIVEIILMKDRETNKSRGFAFVTLESPADAKDAARDMNGKSLDGKAIKVEQA 84          
BLAST of FC932427 vs. ExPASy Swiss-Prot
Match: HNRGT_MACFA (RNA-binding motif protein, X-linked-like-2 OS=Macaca fascicularis GN=RBMXL2 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.886e-11
Identity = 31/73 (42.47%), Postives = 48/73 (65.75%), Query Frame = 3
Query:   39 KIYVGNLSWHTSDESLRAAFGEFGNIVDSIVMVDRETGRSRGFGFVTFSSXXXXXXXINALNEQDLDGRRIRV 257
            K+++G L+  T +++L A FG++G IV+ ++M DRET +SRGF FVTF S          +N + LDG+ I+V
Sbjct:    9 KLFIGGLNLETDEKALEAEFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPANAKAAARDMNGKSLDGKAIKV 81          
BLAST of FC932427 vs. ExPASy Swiss-Prot
Match: HNRGT_HUMAN (RNA-binding motif protein, X-linked-like-2 OS=Homo sapiens GN=RBMXL2 PE=1 SV=3)

HSP 1 Score: 68.9366 bits (167), Expect = 1.886e-11
Identity = 31/73 (42.47%), Postives = 48/73 (65.75%), Query Frame = 3
Query:   39 KIYVGNLSWHTSDESLRAAFGEFGNIVDSIVMVDRETGRSRGFGFVTFSSXXXXXXXINALNEQDLDGRRIRV 257
            K+++G L+  T +++L A FG++G IV+ ++M DRET +SRGF FVTF S          +N + LDG+ I+V
Sbjct:    9 KLFIGGLNLETDEKALEAEFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKAAARDMNGKSLDGKAIKV 81          
BLAST of FC932427 vs. ExPASy Swiss-Prot
Match: RBM38_MOUSE (RNA-binding protein 38 OS=Mus musculus GN=Rbm38 PE=2 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 2.463e-11
Identity = 35/77 (45.45%), Postives = 50/77 (64.94%), Query Frame = 3
Query:   36 SKIYVGNLSWHTSDESLRAAFGEFGNIVDSIVMVDRETGRSRGFGFVTFSSXXXXXXXINALNEQDLDGRRIRVNLA 266
            +KI+VG L +HT+D SLR  F  FG+I +++V+ DR+TG+SRG+GFVT +            N   +DGR+  VNLA
Sbjct:   32 TKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAADRACKDPN-PIIDGRKANVNLA 107          
BLAST of FC932427 vs. ExPASy Swiss-Prot
Match: RBM38_HUMAN (RNA-binding protein 38 OS=Homo sapiens GN=RBM38 PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 2.463e-11
Identity = 35/77 (45.45%), Postives = 50/77 (64.94%), Query Frame = 3
Query:   36 SKIYVGNLSWHTSDESLRAAFGEFGNIVDSIVMVDRETGRSRGFGFVTFSSXXXXXXXINALNEQDLDGRRIRVNLA 266
            +KI+VG L +HT+D SLR  F  FG+I +++V+ DR+TG+SRG+GFVT +            N   +DGR+  VNLA
Sbjct:   34 TKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPN-PIIDGRKANVNLA 109          
The following BLAST results are available for this feature:
BLAST of FC932427 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
RBM38_CHICK1.886e-1145.45RNA-binding protein 38 OS=Gallus gallus GN=RBM38 P... [more]
RBM24_XENTR1.886e-1145.45RNA-binding protein 24 OS=Xenopus tropicalis GN=rb... [more]
RBM24_CHICK1.886e-1145.45RNA-binding protein 24 OS=Gallus gallus GN=RBM24 P... [more]
RB24B_XENLA1.886e-1145.45RNA-binding protein 24-B OS=Xenopus laevis GN=rbm2... [more]
RB24A_XENLA1.886e-1145.45RNA-binding protein 24-A OS=Xenopus laevis GN=rbm2... [more]
HNRPG_MOUSE1.886e-1142.11Heterogeneous nuclear ribonucleoprotein G OS=Mus m... [more]
HNRGT_MACFA1.886e-1142.47RNA-binding motif protein, X-linked-like-2 OS=Maca... [more]
HNRGT_HUMAN1.886e-1142.47RNA-binding motif protein, X-linked-like-2 OS=Homo... [more]
RBM38_MOUSE2.463e-1145.45RNA-binding protein 38 OS=Mus musculus GN=Rbm38 PE... [more]
RBM38_HUMAN2.463e-1145.45RNA-binding protein 38 OS=Homo sapiens GN=RBM38 PE... [more]

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Properties
Property NameValue
Genbank descriptionC34208E03EF PostHarveN Citrus clementina cDNA clone C34208E03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932427 ID=FC932427; Name=FC932427; organism=Citrus clementina; type=EST; length=563bp
GATCACACCTCGTGACTCCCACTTTCTTTCAAATGTCCAAGATCTACGTC
GGAAACCTTTCATGGCACACCAGCGACGAGTCGCTGCGCGCGGCCTTCGG
TGAGTTCGGCAACATTGTCGACTCTATCGTCATGGTTGACCGTGAGACTG
GTCGCTCCCGTGGATTCGGTTTCGTCACCTTCTCTTCCGCTGAGGAGGCC
GAGGCCGCCATCAACGCTCTCAACGAGCAGGACCTCGATGGTCGTCGCAT
CCGCGTCAACCTCGCCAACGCCCGCCCCGGCGGTGGCTTCGGGGGTGGTA
ACGGTGGTGCCGGTGGTGGCCGCTGGTAAACGTTGATCAGTGACCCGAAA
AAGTGCGCGATGGTTATGCAGAACGAGAAAAACGTGACATATTGACGCTT
AGCGTTGGTAACGGTGCTTTGTGTGCCCTGAGAAATCAGTCACAGCTCAC
AAGGCAGTTACTAGAGTTACTCAAGAAGTAGATAGTATTTTCCCTCGGTG
TTATACCTCAAGGACATTTGGAAATTTATTCAGGGCCGATCGATTCGTGC
ACTGATACACAAA
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