FC932427
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC932427 vs. ExPASy Swiss-Prot
Match: RBM24_DANRE (RNA-binding protein 24 OS=Danio rerio GN=rbm24 PE=2 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 2.463e-11 Identity = 35/77 (45.45%), Postives = 49/77 (63.64%), Query Frame = 3 Query: 36 SKIYVGNLSWHTSDESLRAAFGEFGNIVDSIVMVDRETGRSRGFGFVTFSSXXXXXXXINALNEQDLDGRRIRVNLA 266 +KI+VG L +HT+D SLR F FG I +++V+ DR+TG+SRG+GFVT + N +DGR+ VNLA Sbjct: 11 TKIFVGGLPYHTTDSSLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRSAADRACKDPN-PIIDGRKANVNLA 86
BLAST of FC932427 vs. ExPASy Swiss-Prot
Match: RBM24_HUMAN (RNA-binding protein 24 OS=Homo sapiens GN=RBM24 PE=1 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 3.217e-11 Identity = 35/77 (45.45%), Postives = 49/77 (63.64%), Query Frame = 3 Query: 36 SKIYVGNLSWHTSDESLRAAFGEFGNIVDSIVMVDRETGRSRGFGFVTFSSXXXXXXXINALNEQDLDGRRIRVNLA 266 +KI+VG L +HT+D SLR F FG I +++V+ DR+TG+SRG+GFVT + N +DGR+ VNLA Sbjct: 11 TKIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPN-PIIDGRKANVNLA 86
BLAST of FC932427 vs. ExPASy Swiss-Prot
Match: MSIR6_DROME (RNA-binding protein Musashi homolog Rbp6 OS=Drosophila melanogaster GN=Rbp6 PE=1 SV=3) HSP 1 Score: 68.1662 bits (165), Expect = 3.217e-11 Identity = 35/79 (44.30%), Postives = 49/79 (62.03%), Query Frame = 3 Query: 39 KIYVGNLSWHTSDESLRAAFGEFGNIVDSIVMVDRETGRSRGFGFVTFSSXXXXXXXINALNEQDLDGRRIRVNLANAR 275 K+++G LSW TS ESLR FG +G+I +++VM D T RSRGFGFVTFS + +LDG+++ +A R Sbjct: 30 KMFIGGLSWQTSPESLRDYFGRYGDISEAMVMKDPTTRRSRGFGFVTFSDPNSVDKVLTQ-GTHELDGKKVDPKVAFPR 107
BLAST of FC932427 vs. ExPASy Swiss-Prot
Match: GAR2_SCHPO (Protein gar2 OS=Schizosaccharomyces pombe GN=gar2 PE=1 SV=2) HSP 1 Score: 67.781 bits (164), Expect = 4.202e-11 Identity = 29/79 (36.71%), Postives = 51/79 (64.56%), Query Frame = 3 Query: 42 IYVGNLSWHTSDESLRAAFGEFGNIVDSIVMVDRETGRSRGFGFVTFSSXXXXXXXINALNEQDLDGRRIRVNLANARP 278 ++VG LSW+ D+ L F E+G IV + V++D ++GRS+G+G+V F + + A +++DGR + ++L+N RP Sbjct: 265 VFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAAVAANGTKEIDGRMVNLDLSNPRP 343
BLAST of FC932427 vs. ExPASy Swiss-Prot
Match: RB27C_DROME (Heterogeneous nuclear ribonucleoprotein 27C OS=Drosophila melanogaster GN=Hrb27C PE=1 SV=2) HSP 1 Score: 67.3958 bits (163), Expect = 5.488e-11 Identity = 35/82 (42.68%), Postives = 47/82 (57.32%), Query Frame = 3 Query: 30 QMSKIYVGNLSWHTSDESLRAAFGEFGNIVDSIVMVDRETGRSRGFGFVTFSSXXXXXXXINALNEQDLDGRRIRVNLANAR 275 + K++VG LSW T+ E+L F FG+I+D +VM + E+GRSRGFGFVTF+ + LDGR I N R Sbjct: 5 ERGKLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNVNHVLQN-GPHTLDGRTIDPKPCNPR 85
BLAST of FC932427 vs. ExPASy Swiss-Prot
Match: GRP1_SORBI (Glycine-rich RNA-binding protein 1 (Fragment) OS=Sorghum bicolor GN=GRP1 PE=2 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 5.488e-11 Identity = 32/65 (49.23%), Postives = 45/65 (69.23%), Query Frame = 3 Query: 81 SLRAAFGEFGNIVDSIVMVDRETGRSRGFGFVTFSSXXXXXXXINALNEQDLDGRRIRVNLANAR 275 SL +AF +G +++S +++DRET RSRGFGFVTFS+ I +N ++LDGR I VN A +R Sbjct: 2 SLHSAFSTYGEVLESKIILDRETQRSRGFGFVTFSTEEAMRSAIEGMNGKELDGRNITVNEAQSR 66
BLAST of FC932427 vs. ExPASy Swiss-Prot
Match: ROA1_RAT (Heterogeneous nuclear ribonucleoprotein A1 OS=Rattus norvegicus GN=Hnrnpa1 PE=1 SV=3) HSP 1 Score: 67.0106 bits (162), Expect = 7.167e-11 Identity = 34/82 (41.46%), Postives = 52/82 (63.41%), Query Frame = 3 Query: 30 QMSKIYVGNLSWHTSDESLRAAFGEFGNIVDSIVMVDRETGRSRGFGFVTFSSXXXXXXXINALNEQDLDGRRIRVNLANAR 275 Q+ K+++G LS+ T+DESLR+ F ++G + D +VM D T RSRGFGFVT+++ +NA +DGR + A +R Sbjct: 12 QLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKRAVSR 92
BLAST of FC932427 vs. ExPASy Swiss-Prot
Match: ROA1_PANTR (Heterogeneous nuclear ribonucleoprotein A1 OS=Pan troglodytes GN=HNRNPA1 PE=2 SV=1) HSP 1 Score: 67.0106 bits (162), Expect = 7.167e-11 Identity = 34/82 (41.46%), Postives = 52/82 (63.41%), Query Frame = 3 Query: 30 QMSKIYVGNLSWHTSDESLRAAFGEFGNIVDSIVMVDRETGRSRGFGFVTFSSXXXXXXXINALNEQDLDGRRIRVNLANAR 275 Q+ K+++G LS+ T+DESLR+ F ++G + D +VM D T RSRGFGFVT+++ +NA +DGR + A +R Sbjct: 12 QLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKRAVSR 92
BLAST of FC932427 vs. ExPASy Swiss-Prot
Match: ROA1_MOUSE (Heterogeneous nuclear ribonucleoprotein A1 OS=Mus musculus GN=Hnrnpa1 PE=1 SV=2) HSP 1 Score: 67.0106 bits (162), Expect = 7.167e-11 Identity = 34/82 (41.46%), Postives = 52/82 (63.41%), Query Frame = 3 Query: 30 QMSKIYVGNLSWHTSDESLRAAFGEFGNIVDSIVMVDRETGRSRGFGFVTFSSXXXXXXXINALNEQDLDGRRIRVNLANAR 275 Q+ K+++G LS+ T+DESLR+ F ++G + D +VM D T RSRGFGFVT+++ +NA +DGR + A +R Sbjct: 12 QLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKRAVSR 92
BLAST of FC932427 vs. ExPASy Swiss-Prot
Match: ROA1_MACMU (Heterogeneous nuclear ribonucleoprotein A1 OS=Macaca mulatta GN=HNRNPA1 PE=2 SV=3) HSP 1 Score: 67.0106 bits (162), Expect = 7.167e-11 Identity = 34/82 (41.46%), Postives = 52/82 (63.41%), Query Frame = 3 Query: 30 QMSKIYVGNLSWHTSDESLRAAFGEFGNIVDSIVMVDRETGRSRGFGFVTFSSXXXXXXXINALNEQDLDGRRIRVNLANAR 275 Q+ K+++G LS+ T+DESLR+ F ++G + D +VM D T RSRGFGFVT+++ +NA +DGR + A +R Sbjct: 12 QLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEKVDAAMNA-RPHKVDGRVVEPKRAVSR 92 The following BLAST results are available for this feature:
BLAST of FC932427 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 65
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Sequences
The
following sequences are available for this feature:
EST sequence >FC932427 ID=FC932427; Name=FC932427; organism=Citrus clementina; type=EST; length=563bpback to top |