FC932427

Overview
NameFC932427
Unique NameFC932427
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length563
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15511 contig Ccv1_Contig15511:1..563. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932427 vs. ExPASy Swiss-Prot
Match: RBM24_DANRE (RNA-binding protein 24 OS=Danio rerio GN=rbm24 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.463e-11
Identity = 35/77 (45.45%), Postives = 49/77 (63.64%), Query Frame = 3
Query:   36 SKIYVGNLSWHTSDESLRAAFGEFGNIVDSIVMVDRETGRSRGFGFVTFSSXXXXXXXINALNEQDLDGRRIRVNLA 266
            +KI+VG L +HT+D SLR  F  FG I +++V+ DR+TG+SRG+GFVT +            N   +DGR+  VNLA
Sbjct:   11 TKIFVGGLPYHTTDSSLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRSAADRACKDPN-PIIDGRKANVNLA 86          
BLAST of FC932427 vs. ExPASy Swiss-Prot
Match: RBM24_HUMAN (RNA-binding protein 24 OS=Homo sapiens GN=RBM24 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.217e-11
Identity = 35/77 (45.45%), Postives = 49/77 (63.64%), Query Frame = 3
Query:   36 SKIYVGNLSWHTSDESLRAAFGEFGNIVDSIVMVDRETGRSRGFGFVTFSSXXXXXXXINALNEQDLDGRRIRVNLA 266
            +KI+VG L +HT+D SLR  F  FG I +++V+ DR+TG+SRG+GFVT +            N   +DGR+  VNLA
Sbjct:   11 TKIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPN-PIIDGRKANVNLA 86          
BLAST of FC932427 vs. ExPASy Swiss-Prot
Match: MSIR6_DROME (RNA-binding protein Musashi homolog Rbp6 OS=Drosophila melanogaster GN=Rbp6 PE=1 SV=3)

HSP 1 Score: 68.1662 bits (165), Expect = 3.217e-11
Identity = 35/79 (44.30%), Postives = 49/79 (62.03%), Query Frame = 3
Query:   39 KIYVGNLSWHTSDESLRAAFGEFGNIVDSIVMVDRETGRSRGFGFVTFSSXXXXXXXINALNEQDLDGRRIRVNLANAR 275
            K+++G LSW TS ESLR  FG +G+I +++VM D  T RSRGFGFVTFS        +      +LDG+++   +A  R
Sbjct:   30 KMFIGGLSWQTSPESLRDYFGRYGDISEAMVMKDPTTRRSRGFGFVTFSDPNSVDKVLTQ-GTHELDGKKVDPKVAFPR 107          
BLAST of FC932427 vs. ExPASy Swiss-Prot
Match: GAR2_SCHPO (Protein gar2 OS=Schizosaccharomyces pombe GN=gar2 PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 4.202e-11
Identity = 29/79 (36.71%), Postives = 51/79 (64.56%), Query Frame = 3
Query:   42 IYVGNLSWHTSDESLRAAFGEFGNIVDSIVMVDRETGRSRGFGFVTFSSXXXXXXXINALNEQDLDGRRIRVNLANARP 278
            ++VG LSW+  D+ L   F E+G IV + V++D ++GRS+G+G+V F +       + A   +++DGR + ++L+N RP
Sbjct:  265 VFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAAVAANGTKEIDGRMVNLDLSNPRP 343          
BLAST of FC932427 vs. ExPASy Swiss-Prot
Match: RB27C_DROME (Heterogeneous nuclear ribonucleoprotein 27C OS=Drosophila melanogaster GN=Hrb27C PE=1 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 5.488e-11
Identity = 35/82 (42.68%), Postives = 47/82 (57.32%), Query Frame = 3
Query:   30 QMSKIYVGNLSWHTSDESLRAAFGEFGNIVDSIVMVDRETGRSRGFGFVTFSSXXXXXXXINALNEQDLDGRRIRVNLANAR 275
            +  K++VG LSW T+ E+L   F  FG+I+D +VM + E+GRSRGFGFVTF+        +       LDGR I     N R
Sbjct:    5 ERGKLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNVNHVLQN-GPHTLDGRTIDPKPCNPR 85          
BLAST of FC932427 vs. ExPASy Swiss-Prot
Match: GRP1_SORBI (Glycine-rich RNA-binding protein 1 (Fragment) OS=Sorghum bicolor GN=GRP1 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.488e-11
Identity = 32/65 (49.23%), Postives = 45/65 (69.23%), Query Frame = 3
Query:   81 SLRAAFGEFGNIVDSIVMVDRETGRSRGFGFVTFSSXXXXXXXINALNEQDLDGRRIRVNLANAR 275
            SL +AF  +G +++S +++DRET RSRGFGFVTFS+       I  +N ++LDGR I VN A +R
Sbjct:    2 SLHSAFSTYGEVLESKIILDRETQRSRGFGFVTFSTEEAMRSAIEGMNGKELDGRNITVNEAQSR 66          
BLAST of FC932427 vs. ExPASy Swiss-Prot
Match: ROA1_RAT (Heterogeneous nuclear ribonucleoprotein A1 OS=Rattus norvegicus GN=Hnrnpa1 PE=1 SV=3)

HSP 1 Score: 67.0106 bits (162), Expect = 7.167e-11
Identity = 34/82 (41.46%), Postives = 52/82 (63.41%), Query Frame = 3
Query:   30 QMSKIYVGNLSWHTSDESLRAAFGEFGNIVDSIVMVDRETGRSRGFGFVTFSSXXXXXXXINALNEQDLDGRRIRVNLANAR 275
            Q+ K+++G LS+ T+DESLR+ F ++G + D +VM D  T RSRGFGFVT+++       +NA     +DGR +    A +R
Sbjct:   12 QLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKRAVSR 92          
BLAST of FC932427 vs. ExPASy Swiss-Prot
Match: ROA1_PANTR (Heterogeneous nuclear ribonucleoprotein A1 OS=Pan troglodytes GN=HNRNPA1 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 7.167e-11
Identity = 34/82 (41.46%), Postives = 52/82 (63.41%), Query Frame = 3
Query:   30 QMSKIYVGNLSWHTSDESLRAAFGEFGNIVDSIVMVDRETGRSRGFGFVTFSSXXXXXXXINALNEQDLDGRRIRVNLANAR 275
            Q+ K+++G LS+ T+DESLR+ F ++G + D +VM D  T RSRGFGFVT+++       +NA     +DGR +    A +R
Sbjct:   12 QLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKRAVSR 92          
BLAST of FC932427 vs. ExPASy Swiss-Prot
Match: ROA1_MOUSE (Heterogeneous nuclear ribonucleoprotein A1 OS=Mus musculus GN=Hnrnpa1 PE=1 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 7.167e-11
Identity = 34/82 (41.46%), Postives = 52/82 (63.41%), Query Frame = 3
Query:   30 QMSKIYVGNLSWHTSDESLRAAFGEFGNIVDSIVMVDRETGRSRGFGFVTFSSXXXXXXXINALNEQDLDGRRIRVNLANAR 275
            Q+ K+++G LS+ T+DESLR+ F ++G + D +VM D  T RSRGFGFVT+++       +NA     +DGR +    A +R
Sbjct:   12 QLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKRAVSR 92          
BLAST of FC932427 vs. ExPASy Swiss-Prot
Match: ROA1_MACMU (Heterogeneous nuclear ribonucleoprotein A1 OS=Macaca mulatta GN=HNRNPA1 PE=2 SV=3)

HSP 1 Score: 67.0106 bits (162), Expect = 7.167e-11
Identity = 34/82 (41.46%), Postives = 52/82 (63.41%), Query Frame = 3
Query:   30 QMSKIYVGNLSWHTSDESLRAAFGEFGNIVDSIVMVDRETGRSRGFGFVTFSSXXXXXXXINALNEQDLDGRRIRVNLANAR 275
            Q+ K+++G LS+ T+DESLR+ F ++G + D +VM D  T RSRGFGFVT+++       +NA     +DGR +    A +R
Sbjct:   12 QLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEKVDAAMNA-RPHKVDGRVVEPKRAVSR 92          
The following BLAST results are available for this feature:
BLAST of FC932427 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
RBM24_DANRE2.463e-1145.45RNA-binding protein 24 OS=Danio rerio GN=rbm24 PE=... [more]
RBM24_HUMAN3.217e-1145.45RNA-binding protein 24 OS=Homo sapiens GN=RBM24 PE... [more]
MSIR6_DROME3.217e-1144.30RNA-binding protein Musashi homolog Rbp6 OS=Drosop... [more]
GAR2_SCHPO4.202e-1136.71Protein gar2 OS=Schizosaccharomyces pombe GN=gar2 ... [more]
RB27C_DROME5.488e-1142.68Heterogeneous nuclear ribonucleoprotein 27C OS=Dro... [more]
GRP1_SORBI5.488e-1149.23Glycine-rich RNA-binding protein 1 (Fragment) OS=S... [more]
ROA1_RAT7.167e-1141.46Heterogeneous nuclear ribonucleoprotein A1 OS=Ratt... [more]
ROA1_PANTR7.167e-1141.46Heterogeneous nuclear ribonucleoprotein A1 OS=Pan ... [more]
ROA1_MOUSE7.167e-1141.46Heterogeneous nuclear ribonucleoprotein A1 OS=Mus ... [more]
ROA1_MACMU7.167e-1141.46Heterogeneous nuclear ribonucleoprotein A1 OS=Maca... [more]

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Properties
Property NameValue
Genbank descriptionC34208E03EF PostHarveN Citrus clementina cDNA clone C34208E03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932427 ID=FC932427; Name=FC932427; organism=Citrus clementina; type=EST; length=563bp
GATCACACCTCGTGACTCCCACTTTCTTTCAAATGTCCAAGATCTACGTC
GGAAACCTTTCATGGCACACCAGCGACGAGTCGCTGCGCGCGGCCTTCGG
TGAGTTCGGCAACATTGTCGACTCTATCGTCATGGTTGACCGTGAGACTG
GTCGCTCCCGTGGATTCGGTTTCGTCACCTTCTCTTCCGCTGAGGAGGCC
GAGGCCGCCATCAACGCTCTCAACGAGCAGGACCTCGATGGTCGTCGCAT
CCGCGTCAACCTCGCCAACGCCCGCCCCGGCGGTGGCTTCGGGGGTGGTA
ACGGTGGTGCCGGTGGTGGCCGCTGGTAAACGTTGATCAGTGACCCGAAA
AAGTGCGCGATGGTTATGCAGAACGAGAAAAACGTGACATATTGACGCTT
AGCGTTGGTAACGGTGCTTTGTGTGCCCTGAGAAATCAGTCACAGCTCAC
AAGGCAGTTACTAGAGTTACTCAAGAAGTAGATAGTATTTTCCCTCGGTG
TTATACCTCAAGGACATTTGGAAATTTATTCAGGGCCGATCGATTCGTGC
ACTGATACACAAA
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