FC932434

Overview
NameFC932434
Unique NameFC932434
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length648
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15512 contig Ccv1_Contig15512:1..648. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932434 vs. ExPASy Swiss-Prot
Match: HSP7C_DROME (Heat shock 70 kDa protein cognate 3 OS=Drosophila melanogaster GN=Hsc70-3 PE=2 SV=2)

HSP 1 Score: 209.92 bits (533), Expect = 9.082e-54
Identity = 107/162 (66.05%), Postives = 128/162 (79.01%), Query Frame = 2
Query:  158 VVLAIVFFGGLFAISISKEEATKLGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFT-DSERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKEVQRDMKLAPYKIVNRDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKI 640
            ++LA+V F GL      KE+  +LGTVIGIDLGTTYSCVGVYKNG VEIIANDQGNRITPS+VAFT D ERLIG+AAKNQ   NP+ T+FD KRLIGR++ D  VQ D+K  P+K+V ++ KP+I V    G  KVF+PEEISAM+L KMKETAEA+LGKK+
Sbjct:    5 ILLAVVAFVGLSLGEEKKEKDKELGTVIGIDLGTTYSCVGVYKNGRVEIIANDQGNRITPSYVAFTADGERLIGDAAKNQLTTNPENTVFDAKRLIGREWSDTNVQHDIKFFPFKVVEKNSKPHISVDTSQG-AKVFAPEEISAMVLGKMKETAEAYLGKKV 165          
BLAST of FC932434 vs. ExPASy Swiss-Prot
Match: GRP78_MOUSE (78 kDa glucose-regulated protein OS=Mus musculus GN=Hspa5 PE=1 SV=3)

HSP 1 Score: 209.534 bits (532), Expect = 1.186e-53
Identity = 105/164 (64.02%), Postives = 130/164 (79.27%), Query Frame = 2
Query:  152 SLVVLAIVFFGGLFAISISKEEATKLGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFT-DSERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKEVQRDMKLAPYKIVNRDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKI 640
            ++V  A++  G + A    K+E   +GTV+GIDLGTTYSCVGV+KNG VEIIANDQGNRITPS+VAFT + ERLIG+AAKNQ   NP+ T+FD KRLIGR + D  VQ+D+K  P+K+V +  KPYIQV I  G+TK F+PEEISAM+LTKMKETAEA+LGKK+
Sbjct:    5 TVVAAALLLLGAVRAEEEDKKE--DVGTVVGIDLGTTYSCVGVFKNGRVEIIANDQGNRITPSYVAFTPEGERLIGDAAKNQLTSNPENTVFDAKRLIGRTWNDPSVQQDIKFLPFKVVEKKTKPYIQVDIGGGQTKTFAPEEISAMVLTKMKETAEAYLGKKV 166          
BLAST of FC932434 vs. ExPASy Swiss-Prot
Match: GRP78_CHICK (78 kDa glucose-regulated protein OS=Gallus gallus GN=HSPA5 PE=2 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 1.186e-53
Identity = 104/162 (64.20%), Postives = 130/162 (80.25%), Query Frame = 2
Query:  158 VVLAIVFFGGLFAISISKEEATKLGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFT-DSERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKEVQRDMKLAPYKIVNRDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKI 640
            ++LA++  GG  A    K+E   +GTV+GIDLGTTYSCVGV+KNG VEIIANDQGNRITPS+VAFT + ERLIG+AAKNQ   NP+ T+FD KRLIGR + D  VQ+D+K  P+K+V +  KP+IQV +  G+TK F+PEEISAM+LTKMKETAEA+LGKK+
Sbjct:    4 LLLALLLLGGARADDEEKKE--DVGTVVGIDLGTTYSCVGVFKNGRVEIIANDQGNRITPSYVAFTPEGERLIGDAAKNQLTSNPENTVFDAKRLIGRTWNDPSVQQDIKYLPFKVVEKKAKPHIQVDVGGGQTKTFAPEEISAMVLTKMKETAEAYLGKKV 163          
BLAST of FC932434 vs. ExPASy Swiss-Prot
Match: GRP78_HUMAN (78 kDa glucose-regulated protein OS=Homo sapiens GN=HSPA5 PE=1 SV=2)

HSP 1 Score: 206.838 bits (525), Expect = 7.689e-53
Identity = 105/164 (64.02%), Postives = 127/164 (77.44%), Query Frame = 2
Query:  152 SLVVLAIVFFGGLFAISISKEEATKLGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFT-DSERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKEVQRDMKLAPYKIVNRDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKI 640
            SLV   ++      A    K+E   +GTV+GIDLGTTYSCVGV+KNG VEIIANDQGNRITPS+VAFT + ERLIG+AAKNQ   NP+ T+FD KRLIGR + D  VQ+D+K  P+K+V +  KPYIQV I  G+TK F+PEEISAM+LTKMKETAEA+LGKK+
Sbjct:    4 SLVAAMLLLLSAARAEEEDKKE--DVGTVVGIDLGTTYSCVGVFKNGRVEIIANDQGNRITPSYVAFTPEGERLIGDAAKNQLTSNPENTVFDAKRLIGRTWNDPSVQQDIKFLPFKVVEKKTKPYIQVDIGGGQTKTFAPEEISAMVLTKMKETAEAYLGKKV 165          
BLAST of FC932434 vs. ExPASy Swiss-Prot
Match: GRP78_RAT (78 kDa glucose-regulated protein OS=Rattus norvegicus GN=Hspa5 PE=1 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 1.004e-52
Identity = 103/155 (66.45%), Postives = 124/155 (80.00%), Query Frame = 2
Query:  188 LFAISISKEEATK---LGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFT-DSERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKEVQRDMKLAPYKIVNRDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKI 640
            L   ++  EE  K   +GTV+GIDLGTTYSCVGV+KNG VEIIANDQGNRITPS+VAFT + ERLIG+AAKNQ   NP+ T+FD KRLIGR + D  VQ+D+K  P+K+V +  KPYIQV I  G+TK F+PEEISAM+LTKMKETAEA+LGKK+
Sbjct:   11 LLLCAVRAEEEDKKEDVGTVVGIDLGTTYSCVGVFKNGRVEIIANDQGNRITPSYVAFTPEGERLIGDAAKNQLTSNPENTVFDAKRLIGRTWNDPSVQQDIKFLPFKVVEKKTKPYIQVDIGGGQTKTFAPEEISAMVLTKMKETAEAYLGKKV 165          
BLAST of FC932434 vs. ExPASy Swiss-Prot
Match: GRP78_MESAU (78 kDa glucose-regulated protein OS=Mesocricetus auratus GN=HSPA5 PE=1 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 1.004e-52
Identity = 103/155 (66.45%), Postives = 124/155 (80.00%), Query Frame = 2
Query:  188 LFAISISKEEATK---LGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFT-DSERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKEVQRDMKLAPYKIVNRDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKI 640
            L   ++  EE  K   +GTV+GIDLGTTYSCVGV+KNG VEIIANDQGNRITPS+VAFT + ERLIG+AAKNQ   NP+ T+FD KRLIGR + D  VQ+D+K  P+K+V +  KPYIQV I  G+TK F+PEEISAM+LTKMKETAEA+LGKK+
Sbjct:   11 LLLCAVRAEEEDKKEDVGTVVGIDLGTTYSCVGVFKNGRVEIIANDQGNRITPSYVAFTPEGERLIGDAAKNQLTSNPENTVFDAKRLIGRTWNDPSVQQDIKFLPFKVVEKKTKPYIQVDIGGGQTKTFAPEEISAMVLTKMKETAEAYLGKKV 165          
BLAST of FC932434 vs. ExPASy Swiss-Prot
Match: GRP78_SPETR (78 kDa glucose-regulated protein OS=Spermophilus tridecemlineatus GN=HSPA5 PE=2 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 1.311e-52
Identity = 103/154 (66.88%), Postives = 125/154 (81.17%), Query Frame = 2
Query:  188 LFAISISKEEATK--LGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFT-DSERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKEVQRDMKLAPYKIVNRDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKI 640
            L   + ++EE  K  +GTV+GIDLGTTYSCVGV+KNG VEIIANDQGNRITPS+VAFT + ERLIG+AAKNQ   NP+ T+FD KRLIGR + D  VQ+D+K  P+K+V +  KPYIQV I  G+TK F+PEEISAM+LTKMKETAEA+LGKK+
Sbjct:   12 LLCAARAEEEDKKEDVGTVVGIDLGTTYSCVGVFKNGRVEIIANDQGNRITPSYVAFTPEGERLIGDAAKNQLTSNPENTVFDAKRLIGRTWNDPSVQQDIKFLPFKVVEKKTKPYIQVDIGGGQTKTFAPEEISAMVLTKMKETAEAYLGKKV 165          
BLAST of FC932434 vs. ExPASy Swiss-Prot
Match: GRP78_BOVIN (78 kDa glucose-regulated protein OS=Bos taurus GN=HSPA5 PE=2 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 1.311e-52
Identity = 103/164 (62.80%), Postives = 129/164 (78.66%), Query Frame = 2
Query:  152 SLVVLAIVFFGGLFAISISKEEATKLGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFT-DSERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKEVQRDMKLAPYKIVNRDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKI 640
            SLV   ++   G  A +  +++   +GTV+GIDLGTTYSCVGV+KNG VEIIANDQGNRITPS+VAFT + ERLIG+AAKNQ   NP+ T+FD KRLIGR + D  VQ+D+K  P+K+V +  KPYIQV +  G+TK F+PEEISAM+LTKMKETAEA+LGKK+
Sbjct:    4 SLVAAVLLLLLGT-ARAEEEDKKEDVGTVVGIDLGTTYSCVGVFKNGRVEIIANDQGNRITPSYVAFTPEGERLIGDAAKNQLTSNPENTVFDAKRLIGRTWNDPSVQQDIKFLPFKVVEKKTKPYIQVDVGGGQTKTFAPEEISAMVLTKMKETAEAYLGKKV 166          
BLAST of FC932434 vs. ExPASy Swiss-Prot
Match: GRP78_PONAB (78 kDa glucose-regulated protein OS=Pongo abelii GN=HSPA5 PE=2 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 2.922e-52
Identity = 104/164 (63.41%), Postives = 126/164 (76.83%), Query Frame = 2
Query:  152 SLVVLAIVFFGGLFAISISKEEATKLGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFT-DSERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKEVQRDMKLAPYKIVNRDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKI 640
            SLV   ++      A    K+E   +GTV+GIDLGTTYSCVGV+KNG VEIIANDQGNRITP +VAFT + ERLIG+AAKNQ   NP+ T+FD KRLIGR + D  VQ+D+K  P+K+V +  KPYIQV I  G+TK F+PEEISAM+LTKMKETAEA+LGKK+
Sbjct:    4 SLVAAMLLLLSAARAEEEDKKE--DVGTVVGIDLGTTYSCVGVFKNGRVEIIANDQGNRITPPYVAFTPEGERLIGDAAKNQLTSNPENTVFDAKRLIGRTWNDPSVQQDIKFLPFKVVEKKTKPYIQVDIGGGQTKTFAPEEISAMVLTKMKETAEAYLGKKV 165          
BLAST of FC932434 vs. ExPASy Swiss-Prot
Match: HSP74_PARLI (Heat shock 70 kDa protein IV OS=Paracentrotus lividus GN=HSP70IV PE=3 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 4.984e-52
Identity = 97/137 (70.80%), Postives = 116/137 (84.67%), Query Frame = 2
Query:  230 GTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDSERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKEVQRDMKLAPYKIVNRDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKI 640
            G  IGIDLGTTYSCVGV++NG VEIIANDQGNR TPS+VAFTDSERLIG+AAKNQ A+NP  TIFD KRLIGR+F D  +Q DMK  P++++N+DGKP +Q +   GETK  SPEE+S+M+LTKMKETAEA+LGKK+
Sbjct:    4 GPAIGIDLGTTYSCVGVFQNGKVEIIANDQGNRTTPSYVAFTDSERLIGDAAKNQVAMNPTNTIFDAKRLIGRRFNDSSIQADMKHWPFRVINKDGKPMLQAEYM-GETKTLSPEEVSSMVLTKMKETAEAYLGKKV 139          
The following BLAST results are available for this feature:
BLAST of FC932434 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
HSP7C_DROME9.082e-5466.05Heat shock 70 kDa protein cognate 3 OS=Drosophila ... [more]
GRP78_MOUSE1.186e-5364.0278 kDa glucose-regulated protein OS=Mus musculus G... [more]
GRP78_CHICK1.186e-5364.2078 kDa glucose-regulated protein OS=Gallus gallus ... [more]
GRP78_HUMAN7.689e-5364.0278 kDa glucose-regulated protein OS=Homo sapiens G... [more]
GRP78_RAT1.004e-5266.4578 kDa glucose-regulated protein OS=Rattus norvegi... [more]
GRP78_MESAU1.004e-5266.4578 kDa glucose-regulated protein OS=Mesocricetus a... [more]
GRP78_SPETR1.311e-5266.8878 kDa glucose-regulated protein OS=Spermophilus t... [more]
GRP78_BOVIN1.311e-5262.8078 kDa glucose-regulated protein OS=Bos taurus GN=... [more]
GRP78_PONAB2.922e-5263.4178 kDa glucose-regulated protein OS=Pongo abelii G... [more]
HSP74_PARLI4.984e-5270.80Heat shock 70 kDa protein IV OS=Paracentrotus livi... [more]

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Properties
Property NameValue
Genbank descriptionC34208E10EF PostHarveN Citrus clementina cDNA clone C34208E10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932434 ID=FC932434; Name=FC932434; organism=Citrus clementina; type=EST; length=648bp
GGACTGAAACCAGAAGGCCTTTCGAAAGCAAAAAAACACACTTCAAACAT
CGAAACCTCCTCAATTGAACGAAGCTCTCTCAGAAAGGAGTTTGAAGCAG
GGTATAATTGCTGCAGTACGCGCGATGGCTGGCTCGTGGAGAGCACGCGG
GTCCCTCGTTGTGCTGGCGATTGTCTTCTTCGGAGGTCTTTTTGCAATTT
CAATTTCAAAAGAGGAAGCTACGAAGTTGGGAACGGTGATTGGGATAGAT
CTTGGTACAACTTATTCTTGTGTTGGTGTTTACAAGAATGGTCATGTCGA
AATCATAGCCAATGATCAAGGAAACCGTATTACTCCATCATGGGTTGCAT
TCACTGACAGTGAGAGGTTGATCGGTGAGGCAGCAAAGAATCAGGCTGCT
GTCAATCCTGACAGGACCATCTTTGATGTCAAGAGACTTATTGGAAGAAA
GTTTGAGGACAAGGAGGTTCAGAGGGACATGAAGCTTGCTCCTTACAAGA
TTGTGAATAGGGATGGAAAGCCTTATATTCAGGTTCAGATTAGGGACGGC
GAGACCAAGGTCTTCAGTCCTGAGGAAATCAGTGCTATGATACTGACTAA
GATGAAGGAGACAGCCGAGGCATTCCTTGGGAAGAAAATTAAGGATGC
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