FC932434

Overview
NameFC932434
Unique NameFC932434
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length648
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932434 vs. ExPASy Swiss-Prot
Match: DNAK_NITOC (Chaperone protein dnaK OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) GN=dnaK PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 9.146e-30
Identity = 66/141 (46.81%), Postives = 98/141 (69.50%), Query Frame = 2
Query:  227 LGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFT-DSERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKEVQRDMKLAPYKIVNRD-GKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKIK 643
            +G +IGIDLGTT SCV + +     +I N +G+R TPS VAFT + E L+G++AK QA  NP  T++ +KRLIGR+F+++ VQRD+K+ PYKIV  D G  ++     +   K  +P E+SA +L KMK+TAE +LG++++
Sbjct:    1 MGKIIGIDLGTTNSCVALMEGNKPRVIENAEGDRTTPSVVAFTKEGETLVGQSAKRQAITNPQNTLYAIKRLIGRRFDEEVVQRDIKMVPYKIVKADNGDAWV-----EATGKKMAPPEVSANVLRKMKKTAEDYLGEEVE 136          
BLAST of FC932434 vs. ExPASy Swiss-Prot
Match: DNAK_METPB (Chaperone protein dnaK OS=Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001) GN=dnaK PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 9.146e-30
Identity = 73/140 (52.14%), Postives = 92/140 (65.71%), Query Frame = 2
Query:  227 LGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDS-ERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKEVQRDMKLAPYKIVNRD-GKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKI 640
            +G VIGIDLGTT SCV V +     +I N +G R TPS VAFTD  ERL+G+ AK QA  NP+RT F +KRLIGR ++D   Q+D  L PYKI   D G  +++    DG  K +SP +ISA  L KMKETAE+ LG+ +
Sbjct:    1 MGKVIGIDLGTTNSCVAVMEGTQPRVIENAEGARTTPSIVAFTDDGERLVGQPAKRQAVTNPERTFFAIKRLIGRTYDDPLTQKDKGLVPYKIARGDNGDAWVEA---DG--KKYSPSQISAFTLQKMKETAESHLGQPV 135          
BLAST of FC932434 vs. ExPASy Swiss-Prot
Match: DNAK_METEP (Chaperone protein dnaK OS=Methylobacterium extorquens (strain PA1) GN=dnaK PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 9.146e-30
Identity = 73/140 (52.14%), Postives = 92/140 (65.71%), Query Frame = 2
Query:  227 LGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDS-ERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKEVQRDMKLAPYKIVNRD-GKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKI 640
            +G VIGIDLGTT SCV V +     +I N +G R TPS VAFTD  ERL+G+ AK QA  NP+RT F +KRLIGR ++D   Q+D  L PYKI   D G  +++    DG  K +SP +ISA  L KMKETAE+ LG+ +
Sbjct:    1 MGKVIGIDLGTTNSCVAVMEGTQPRVIENAEGARTTPSIVAFTDDGERLVGQPAKRQAVTNPERTFFAIKRLIGRTYDDPLTQKDKGLVPYKIARGDNGDAWVEA---DG--KKYSPSQISAFTLQKMKETAESHLGQPV 135          
BLAST of FC932434 vs. ExPASy Swiss-Prot
Match: DNAK_METC4 (Chaperone protein dnaK OS=Methylobacterium chloromethanicum (strain CM4 / NCIMB 13688) GN=dnaK PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 9.146e-30
Identity = 73/140 (52.14%), Postives = 92/140 (65.71%), Query Frame = 2
Query:  227 LGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDS-ERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKEVQRDMKLAPYKIVNRD-GKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKI 640
            +G VIGIDLGTT SCV V +     +I N +G R TPS VAFTD  ERL+G+ AK QA  NP+RT F +KRLIGR ++D   Q+D  L PYKI   D G  +++    DG  K +SP +ISA  L KMKETAE+ LG+ +
Sbjct:    1 MGKVIGIDLGTTNSCVAVMEGTQPRVIENAEGARTTPSIVAFTDDGERLVGQPAKRQAVTNPERTFFAIKRLIGRTYDDPLTQKDKGLVPYKIARGDNGDAWVEA---DG--KKYSPSQISAFTLQKMKETAESHLGQPV 135          
BLAST of FC932434 vs. ExPASy Swiss-Prot
Match: DNAK_HAEPS (Chaperone protein dnaK OS=Haemophilus parasuis serovar 5 (strain SH0165) GN=dnaK PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 9.146e-30
Identity = 68/141 (48.23%), Postives = 94/141 (66.67%), Query Frame = 2
Query:  227 LGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDSERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKEVQRDMKLAPYKIVNRD-GKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKIKD 646
            +G +IGIDLGTT SCV V       +I N +G R TPS +A+TD E L+G+ AK QA  NP  T+F +KRLIGR+F D EVQRD+++ P++I   D G  ++ V+   GE    +P +ISA +L KMK+TAE FLG+ + +
Sbjct:    1 MGKIIGIDLGTTNSCVAVMDGDKPRVIENAEGARTTPSIIAYTDKETLVGQPAKRQAITNPKNTLFAIKRLIGRRFTDSEVQRDIEIMPFEITKADNGDAWVSVK---GEK--MAPPQISAEVLKKMKKTAEDFLGEPVTE 136          
BLAST of FC932434 vs. ExPASy Swiss-Prot
Match: DNAK_CHRVO (Chaperone protein dnaK OS=Chromobacterium violaceum GN=dnaK PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 9.146e-30
Identity = 69/142 (48.59%), Postives = 100/142 (70.42%), Query Frame = 2
Query:  227 LGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFT-DSERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKEVQRDMKLAPYKIVN-RDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKIKD 646
            +G +IGIDLGTT SCV V + G+ ++I N +GNR TPS +A+  D E L+G  AK QA  NP  TI+  KRLIGR+FEDKEVQ+D+ L P++I+  ++G  +  V++RD E    +P +ISA +L KMK+ AE +LG+++ +
Sbjct:    1 MGKIIGIDLGTTNSCVAVVEGGNPKVIENAEGNRTTPSIIAYVEDGEILVGAPAKRQAVTNPKNTIYAAKRLIGRRFEDKEVQKDIDLMPFEILKAKNGDAW--VKVRDQE---LAPPQISAEVLRKMKKAAEDYLGEEVTE 137          
BLAST of FC932434 vs. ExPASy Swiss-Prot
Match: DNAK_BLOPB (Chaperone protein dnaK OS=Blochmannia pennsylvanicus (strain BPEN) GN=dnaK PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 9.146e-30
Identity = 65/142 (45.77%), Postives = 98/142 (69.01%), Query Frame = 2
Query:  227 LGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFT-DSERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKEVQRDMKLAPYKIVNRD-GKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKIKD 646
            +G +IGIDLGTT SCV + +     ++ N +G+R TPS +A+T D E L+G+ AK Q+  NP  T+F +KRLIGR+F+D EVQRD+ + PYKI++ D G  ++ V     + +  +P ++SA IL KMK+TAE +LG++I +
Sbjct:    1 MGKIIGIDLGTTNSCVAIIEGNKPRVLENSEGDRTTPSIIAYTQDGEILVGQPAKRQSVTNPKNTLFAIKRLIGRRFQDTEVQRDVNIMPYKIISADNGDAWLDV-----KGQKMAPPQVSAEILKKMKKTAEDYLGEQISE 137          
BLAST of FC932434 vs. ExPASy Swiss-Prot
Match: DNAK_ACTSZ (Chaperone protein dnaK OS=Actinobacillus succinogenes (strain ATCC 55618 / 130Z) GN=dnaK PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 9.146e-30
Identity = 68/142 (47.89%), Postives = 97/142 (68.31%), Query Frame = 2
Query:  227 LGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFT-DSERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKEVQRDMKLAPYKIVNRD-GKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKIKD 646
            +G +IGIDLGTT SCV V       +I N +G+R TPS +A+T D+E L+G+ AK QA  NP  T+F +KRLIGR+FED EVQRD+ + P+KI+  D G  ++ V+   G+    +P ++SA +L KMK+TAE FLG+ + +
Sbjct:    1 MGKIIGIDLGTTNSCVAVMDGDKPRVIENAEGDRTTPSIIAYTNDNETLVGQPAKRQAVTNPKNTLFAIKRLIGRRFEDNEVQRDVDIMPFKIIRADNGDAWVDVK---GDK--LAPPQVSAEVLKKMKKTAEDFLGETVTE 137          
BLAST of FC932434 vs. ExPASy Swiss-Prot
Match: GRP75_CHICK (Stress-70 protein, mitochondrial OS=Gallus gallus GN=HSPA9 PE=1 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.194e-29
Identity = 72/146 (49.32%), Postives = 95/146 (65.07%), Query Frame = 2
Query:  215 EATKLGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFT-DSERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKEVQRDMKLAPYKIVN-RDGKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKIKD 646
            EA K G VIGIDLGTT SCV V +    +++ N +G R TPS VAFT D ERL+G  AK QA  NP  T +  KRLIGR+F+D EV++D+K  P+KIV   +G  ++     +   K++SP +I A +L KMKETAE +LG   K+
Sbjct:   51 EAIK-GAVIGIDLGTTNSCVAVMEGKQAKVLENSEGARTTPSVVAFTADGERLVGMPAKRQAVTNPHNTFYATKRLIGRRFDDSEVKKDIKNVPFKIVRASNGDAWV-----EAHGKLYSPSQIGAFVLMKMKETAENYLGHPAKN 190          
BLAST of FC932434 vs. ExPASy Swiss-Prot
Match: DNAK_SALAR (Chaperone protein dnaK OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) GN=dnaK PE=2 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.194e-29
Identity = 65/142 (45.77%), Postives = 96/142 (67.61%), Query Frame = 2
Query:  227 LGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFT-DSERLIGEAAKNQAAVNPDRTIFDVKRLIGRKFEDKEVQRDMKLAPYKIVNRD-GKPYIQVQIRDGETKVFSPEEISAMILTKMKETAEAFLGKKIKD 646
            +G +IGIDLGTT SCV +       ++ N +G+R TPS +A+T D E L+G+ AK QA  NP  T+F +KRLIGR+F+D+EVQRD+ + PYKI+  D G  ++ V     + +  +P +ISA +L KMK+TAE +LG+ + +
Sbjct:    1 MGKIIGIDLGTTNSCVAIMDGMQARVLENAEGDRTTPSIIAYTQDGETLVGQPAKRQAVTNPQNTLFAIKRLIGRRFQDEEVQRDVSIMPYKIIEADNGDAWLDV-----KGQKMAPPQISAEVLKKMKKTAEDYLGEPVTE 137          
The following BLAST results are available for this feature:
BLAST of FC932434 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNAK_NITOC9.146e-3046.81Chaperone protein dnaK OS=Nitrosococcus oceani (st... [more]
DNAK_METPB9.146e-3052.14Chaperone protein dnaK OS=Methylobacterium populi ... [more]
DNAK_METEP9.146e-3052.14Chaperone protein dnaK OS=Methylobacterium extorqu... [more]
DNAK_METC49.146e-3052.14Chaperone protein dnaK OS=Methylobacterium chlorom... [more]
DNAK_HAEPS9.146e-3048.23Chaperone protein dnaK OS=Haemophilus parasuis ser... [more]
DNAK_CHRVO9.146e-3048.59Chaperone protein dnaK OS=Chromobacterium violaceu... [more]
DNAK_BLOPB9.146e-3045.77Chaperone protein dnaK OS=Blochmannia pennsylvanic... [more]
DNAK_ACTSZ9.146e-3047.89Chaperone protein dnaK OS=Actinobacillus succinoge... [more]
GRP75_CHICK1.194e-2949.32Stress-70 protein, mitochondrial OS=Gallus gallus ... [more]
DNAK_SALAR1.194e-2945.77Chaperone protein dnaK OS=Salmonella arizonae (str... [more]

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Properties
Property NameValue
Genbank descriptionC34208E10EF PostHarveN Citrus clementina cDNA clone C34208E10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932434 ID=FC932434; Name=FC932434; organism=Citrus clementina; type=EST; length=648bp
GGACTGAAACCAGAAGGCCTTTCGAAAGCAAAAAAACACACTTCAAACAT
CGAAACCTCCTCAATTGAACGAAGCTCTCTCAGAAAGGAGTTTGAAGCAG
GGTATAATTGCTGCAGTACGCGCGATGGCTGGCTCGTGGAGAGCACGCGG
GTCCCTCGTTGTGCTGGCGATTGTCTTCTTCGGAGGTCTTTTTGCAATTT
CAATTTCAAAAGAGGAAGCTACGAAGTTGGGAACGGTGATTGGGATAGAT
CTTGGTACAACTTATTCTTGTGTTGGTGTTTACAAGAATGGTCATGTCGA
AATCATAGCCAATGATCAAGGAAACCGTATTACTCCATCATGGGTTGCAT
TCACTGACAGTGAGAGGTTGATCGGTGAGGCAGCAAAGAATCAGGCTGCT
GTCAATCCTGACAGGACCATCTTTGATGTCAAGAGACTTATTGGAAGAAA
GTTTGAGGACAAGGAGGTTCAGAGGGACATGAAGCTTGCTCCTTACAAGA
TTGTGAATAGGGATGGAAAGCCTTATATTCAGGTTCAGATTAGGGACGGC
GAGACCAAGGTCTTCAGTCCTGAGGAAATCAGTGCTATGATACTGACTAA
GATGAAGGAGACAGCCGAGGCATTCCTTGGGAAGAAAATTAAGGATGC
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