FC932437

Overview
NameFC932437
Unique NameFC932437
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length688
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC932437_ssr572 microsatellite FC932437_ssr572:572..583. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14845 contig Ccv1_Contig14845:61..748. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932437 vs. ExPASy Swiss-Prot
Match: ROC5_NICSY (33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.389e-18
Identity = 52/138 (37.68%), Postives = 77/138 (55.80%), Query Frame = 2
Query:  266 VAVSSEFDQEEDLLSDEDGSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGRPLRVNXXXXXXXXXXXXXXXXXXXXXXXXXXXXNRVYGGNLSW 679
            VA+S+E ++E +   +   S      +L+VGNLPFS+ S+QL+ +F  AG V  VE++YD+VT RSRGF FVTM SVEE + A + F+G ++ GR ++VN                            +++Y  NLSW
Sbjct:   89 VALSAEEEEEIEEKEERVESESVEGGRLYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFVTMGSVEEAKEAIRLFDGSQVGGRTVKVNFPEVPRGGEREVMSAKIRSTYQGFVDSPHKLYVANLSW 226          

HSP 2 Score: 69.3218 bits (168), Expect = 2.149e-11
Identity = 35/74 (47.30%), Postives = 46/74 (62.16%), Query Frame = 2
Query:  344 KLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGRPLRVN 565
            KL+V NL +++ S  L   F         +VIYD+ +GRSRGFGF+T SS E + +A    N  ELEGRPLR+N
Sbjct:  218 KLYVANLSWALTSQGLRDAFADQPGFMSAKVIYDRSSGRSRGFGFITFSSAEAMNSALDTMNEVELEGRPLRLN 291          
BLAST of FC932437 vs. ExPASy Swiss-Prot
Match: RBM39_PONAB (RNA-binding protein 39 OS=Pongo abelii GN=RBM39 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.758e-13
Identity = 32/74 (43.24%), Postives = 52/74 (70.27%), Query Frame = 2
Query:  341 LKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGRPLRV 562
            ++L+VG+L F++    L G+FE  G +E ++++ D  TGRS+G+GF+T S  E  + A +Q NG+EL GRP++V
Sbjct:  250 MRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKV 323          
BLAST of FC932437 vs. ExPASy Swiss-Prot
Match: RBM39_MOUSE (RNA-binding protein 39 OS=Mus musculus GN=Rbm39 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.758e-13
Identity = 32/74 (43.24%), Postives = 52/74 (70.27%), Query Frame = 2
Query:  341 LKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGRPLRV 562
            ++L+VG+L F++    L G+FE  G +E ++++ D  TGRS+G+GF+T S  E  + A +Q NG+EL GRP++V
Sbjct:  250 MRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKV 323          
BLAST of FC932437 vs. ExPASy Swiss-Prot
Match: RBM39_HUMAN (RNA-binding protein 39 OS=Homo sapiens GN=RBM39 PE=1 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 1.758e-13
Identity = 32/74 (43.24%), Postives = 52/74 (70.27%), Query Frame = 2
Query:  341 LKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGRPLRV 562
            ++L+VG+L F++    L G+FE  G +E ++++ D  TGRS+G+GF+T S  E  + A +Q NG+EL GRP++V
Sbjct:  250 MRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKV 323          
BLAST of FC932437 vs. ExPASy Swiss-Prot
Match: RRP2_SPIOL (30S ribosomal protein 2, chloroplastic OS=Spinacia oleracea GN=PSRP2 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.998e-13
Identity = 39/109 (35.78%), Postives = 62/109 (56.88%), Query Frame = 2
Query:  239 SSPSRFVRNVAVSSEFDQEEDLLSDEDGSNFSPDLKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGRPLRVN 565
            ++P        V+ E        S  DG       +L+VGN+P ++++ +L  + E  G +E+ EV+YDK +GRSR FGFVTM +VE+  A  ++ N  E+ GR ++VN
Sbjct:   53 TNPPLLKVRAVVTEETSSSSTASSSSDGEGAR---RLYVGNIPRNLNNDELRTIVEEHGAIEIAEVMYDKYSGRSRRFGFVTMKTVEDANAVIEKLNDTEIGGRKIKVN 158          
BLAST of FC932437 vs. ExPASy Swiss-Prot
Match: RBM23_HUMAN (Probable RNA-binding protein 23 OS=Homo sapiens GN=RBM23 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.488e-12
Identity = 32/74 (43.24%), Postives = 50/74 (67.57%), Query Frame = 2
Query:  341 LKLFVGNLPFSVDSAQLAGLFETAGNVEMVEVIYDKVTGRSRGFGFVTMSSVEEVEAAAQQFNGYELEGRPLRV 562
            ++L+VG+L F++    L G+FE  G ++ + ++ D  TGRS+G+GF+T S  E    A +Q NG+EL GRP+RV
Sbjct:  263 MRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRV 336          
The following BLAST results are available for this feature:
BLAST of FC932437 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
ROC5_NICSY1.389e-1837.6833 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
RBM39_PONAB1.758e-1343.24RNA-binding protein 39 OS=Pongo abelii GN=RBM39 PE... [more]
RBM39_MOUSE1.758e-1343.24RNA-binding protein 39 OS=Mus musculus GN=Rbm39 PE... [more]
RBM39_HUMAN1.758e-1343.24RNA-binding protein 39 OS=Homo sapiens GN=RBM39 PE... [more]
RRP2_SPIOL2.998e-1335.7830S ribosomal protein 2, chloroplastic OS=Spinacia... [more]
RBM23_HUMAN1.488e-1243.24Probable RNA-binding protein 23 OS=Homo sapiens GN... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34208F01EF PostHarveN Citrus clementina cDNA clone C34208F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932437 ID=FC932437; Name=FC932437; organism=Citrus clementina; type=EST; length=688bp
ACTTTATCTTCTTCATTTTCGAGGCTTTCAAAGAAACTCAAAAACCCTTG
AGCCAGTAGCCATGTCTACGACGTCAGCTTCTTCGCTGGTGCTCCCATCT
CTCAGTCCCAAAACCCTAGCCTTCTACAACTCAAAACCCACTTCATTTTC
TCTCTTATCTTCCTCCTCTTCTCACAAACTTCTAGCGAAGCCCATCTCGA
TATCCTCTTCTTTCATCCATTCTTTTCAACCCTTGCCCTCTTCCCCCTCT
CGTTTCGTCAGAAACGTAGCCGTTTCGTCCGAGTTTGACCAGGAAGAGGA
CCTTTTGAGCGATGAAGACGGTTCGAATTTCTCCCCCGACTTGAAACTTT
TTGTGGGTAACCTTCCTTTTAGCGTTGACAGTGCTCAGCTTGCTGGCTTG
TTTGAAACCGCTGGAAATGTTGAGATGGTTGAGGTAATATATGACAAGGT
CACTGGGAGAAGCAGAGGATTTGGTTTTGTGACCATGTCAAGTGTTGAGG
AAGTTGAAGCAGCTGCTCAGCAGTTCAATGGCTATGAACTCGAGGGCCGA
CCCCTGAGGGTGAACTCTGGACCTCCTCCTCCTAGGAGGGAAGAATTCTC
TCCCAGAGGGCCCAGAGGAGGTGGTGCTGGTGCGCCTTCTAGTGGTGGCA
ACCGTGTTTATGGTGGTAACCTTTCATGGGGTGGTGAT
back to top