FC932441

Overview
NameFC932441
Unique NameFC932441
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length727
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932441 vs. ExPASy Swiss-Prot
Match: TIP31_ORYSJ (Probable aquaporin TIP3-1 OS=Oryza sativa subsp. japonica GN=TIP3-1 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.373e-11
Identity = 37/94 (39.36%), Postives = 57/94 (60.64%), Query Frame = 3
Query:  249 RAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVG-IQGIAWAFGGMIFALIYCTAGISGGHINPAVTFGLFLARKLSLTRALFYMVMQCLGAI 527
            RA I+EF+AT +F++ +  +++ + K     ST G +  ++ A    +   +     ISGGH+NPA+TFG  L  +LSL RALFY + Q LGA+
Sbjct:   27 RAAISEFLATAIFVFAAEGSILSLGKLYQDMSTPGGLVAVSLAHALALAVAVAVAVNISGGHVNPAITFGALLGGRLSLIRALFYWLAQLLGAV 120          
BLAST of FC932441 vs. ExPASy Swiss-Prot
Match: TIP11_MAIZE (Aquaporin TIP1-1 OS=Zea mays GN=TIP1-1 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.373e-11
Identity = 52/161 (32.30%), Postives = 77/161 (47.83%), Query Frame = 3
Query:  249 RAGIAEFIATFLFLYISVLTVMGVVK--SNTKCSTVGIQGIAWAFGGMIFALIYCTAGISGGHINPAVTFGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMXXXXXXXXXXXXXXVAHGYTKGDGLGAEIIGTFVLVYTVF-SATDAKRSARDSHXP 722
            +A  AEFI+T +F++    + M   K       +  G+   A A    +F  +   A ISGGH+NPAVTFG F+   ++L R L Y V Q LG+      V  F+              +  G +  + L  EI+ TF LVYTV+ +A D K+ +  +  P
Sbjct:   21 KAAFAEFISTLIFVFAGQGSGMAFSKLTGGGPTTPAGLIAAAVAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGNITLFRGLLYWVAQLLGS-----TVACFLLRFSTGGQATGTFGLT-GVSVWEALVLEIVMTFGLVYTVYATAVDPKKGSLGTIAP 175          
BLAST of FC932441 vs. ExPASy Swiss-Prot
Match: TIP31_MAIZE (Aquaporin TIP3-1 OS=Zea mays GN=TIP3-1 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.794e-11
Identity = 48/152 (31.58%), Postives = 73/152 (48.03%), Query Frame = 3
Query:  249 RAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVG-IQGIAWAFGGMIFALIYCTAGISGGHINPAVTFGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMXXXXXXXXXXXXXXVAHGYTKGDGLGAEIIGTFVLVYTVFSAT-DAKR 698
            RA I+EFIAT +F++ +  +V+ + K     ST G +  +A A    +   +     ISGGH+NPAVTFG  +  ++SL RA+ Y V Q LGA+         +              +A G      +  E + TF L+Y  ++   D KR
Sbjct:   26 RAAISEFIATAIFVFAAEGSVLSLGKMYHDMSTAGGLVAVALAHALALAVAVAVAVNISGGHVNPAVTFGALVGGRVSLVRAVLYWVAQLLGAVAAT-----LLLRLATGGMRPPGFALASGVGDWHAVLLEAVMTFGLMYAYYATVIDPKR 172          
BLAST of FC932441 vs. ExPASy Swiss-Prot
Match: TIP12_ORYSJ (Probable aquaporin TIP1-2 OS=Oryza sativa subsp. japonica GN=TIP1-2 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.794e-11
Identity = 50/159 (31.45%), Postives = 77/159 (48.43%), Query Frame = 3
Query:  249 RAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTV--GIQGIAWAFGGMIFALIYCTAGISGGHINPAVTFGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMXXXXXXXXXXXXXXVAHGYTKGDGLGA------EIIGTFVLVYTVF-SATDAKR 698
            +A +AEFI+  +F++    + M   K      T   G+   + A    +F  +   A ISGGH+NPAVTFG F+   +SL +A+ Y V Q LG++    ++K                     ++   G+GA      EI+ TF LVYTV+ +A D K+
Sbjct:   21 KAAVAEFISMLIFVFAGSGSGMAFSKLTDGGGTTPSGLIAASLAHALALFVAVAVGANISGGHVNPAVTFGAFVGGNISLVKAVVYWVAQLLGSVVACLLLK-----------IATGGAAVGAFSLSAGVGAWNAVVFEIVMTFGLVYTVYATAVDPKK 168          
BLAST of FC932441 vs. ExPASy Swiss-Prot
Match: MIP_HUMAN (Lens fiber major intrinsic protein OS=Homo sapiens GN=MIP PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.343e-11
Identity = 46/158 (29.11%), Postives = 72/158 (45.57%), Query Frame = 3
Query:  234 SWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFALIYCTAGISGGHINPAVTFGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMXXXXXXXXXXXXXXVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRSAR 707
            S SF+RA  AEF AT  +++  + + +           + +  +A AFG  +  L+     ISG H+NPAVTF   +  ++SL RA  YM  Q LGA+ GA V+  +               +    + G     EI  T   V  +F+  D +R+ +
Sbjct:    6 SASFWRAIFAEFFATLFYVFFGLGSSLRWAPG-----PLHVLQVAMAFGLALATLVQSVGHISGAHVNPAVTFAFLVGSQMSLLRAFCYMAAQLLGAVAGAAVL--YSVTPPAVRGNLALNTLHPAVSVGQATTVEIFLTLQFVLCIFATYDERRNGQ 156          
BLAST of FC932441 vs. ExPASy Swiss-Prot
Match: AQPZ_PSEPK (Aquaporin Z OS=Pseudomonas putida (strain KT2440) GN=aqpZ PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.343e-11
Identity = 39/125 (31.20%), Postives = 61/125 (48.80%), Query Frame = 3
Query:  348 VGIQGIAWAFGGMIFALIYCTAGISGGHINPAVTFGLFLARKLSLTRALFYMVMQCLGAICGAGVV------KGFMXXXXXXXXXXXXXXVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRSA 704
            +G+ G+A+AFG  +  + +    ISG H+NPAV+FGL +  +      L Y++ Q +GAI  AGV+      K                    GYT G G  +E++ T + +  +  ATDA+  A
Sbjct:   35 IGVLGVAFAFGLTVLTMAFAIGHISGCHLNPAVSFGLVVGGRFPAKELLPYVIAQVIGAILAAGVIYLIASGKAGFELSAGLASNGYADHSPGGYTLGAGFVSEVVMTAMFLVVIMGATDARAPA 159          
BLAST of FC932441 vs. ExPASy Swiss-Prot
Match: TIP32_MAIZE (Aquaporin TIP3-2 OS=Zea mays GN=TIP3-2 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.059e-11
Identity = 47/155 (30.32%), Postives = 73/155 (47.10%), Query Frame = 3
Query:  249 RAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTV----GIQGIAWAFGGMIFALIYCTAGISGGHINPAVTFGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMXXXXXXXXXXXXXXVAHGYTKGDGLGAEIIGTFVLVYTVF-SATDAKR 698
            RA I+EFIAT +F++ +  +V+ + K     ST+    G+  +A A    +   +     +SGGH+NPAVTFG  +  ++SL RA+ Y   Q LGA+         +              +A G   G  +  E + TF  VY  + +  D KR
Sbjct:   28 RAAISEFIATAIFVFAAEGSVLSLGKMYHDHSTISTAGGLVAVALAHALGLAVAVAVAVNVSGGHVNPAVTFGALVGGRVSLVRAVLYWAAQLLGAVAAT-----LLLRLATGGARPPGFALASGVGDGHAVLLEAVMTFGFVYAYYATVVDPKR 177          
BLAST of FC932441 vs. ExPASy Swiss-Prot
Match: MIP_CAVPO (Lens fiber major intrinsic protein OS=Cavia porcellus GN=MIP PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.059e-11
Identity = 47/158 (29.75%), Postives = 71/158 (44.94%), Query Frame = 3
Query:  234 SWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFALIYCTAGISGGHINPAVTFGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFMXXXXXXXXXXXXXXVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRSAR 707
            S SF+RA  AEF AT  +++  +   +           + +  +A AFG  +  L+     ISG H+NPAVTF   +  ++SL RA  YM  Q LGA+ GA V+  +               +  G +       EI  T   V  +F+  D +R+ R
Sbjct:    6 SASFWRAIFAEFFATLFYVFFGLGASLRWAPG-----PLHVLQVALAFGLALAXLVQTVGHISGAHVNPAVTFXFLVGSQMSLLRAFCYMAAQLLGAVAGAAVL--YSVTPPAVRGNLALNTLHAGVSVXQATTVEIFLTLQFVLCIFATYDERRNGR 156          
BLAST of FC932441 vs. ExPASy Swiss-Prot
Match: AQP2_PROHA (Aquaporin-2 (Fragment) OS=Procavia capensis habessinica GN=AQP2 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.219e-11
Identity = 40/104 (38.46%), Postives = 58/104 (55.77%), Query Frame = 3
Query:  234 SWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFALIYCTAGISGGHINPAVTFGLFLARKLSLTRALFYMVMQCLGAICGAGVV 545
            S +F RA ++EF+AT LF++  + + +     N   +   +  IA AFG  I  L+     ISG HINPAVT    +   +S  RALFY+  Q LGA+ GA ++
Sbjct:    1 SIAFSRAVLSEFLATLLFVFFGLGSAL-----NWPQALPSVLQIAMAFGLAIGTLVQTLGHISGAHINPAVTIACLVGCHVSFLRALFYLAAQLLGAVAGAALL 99          
BLAST of FC932441 vs. ExPASy Swiss-Prot
Match: AQP2_TALEU (Aquaporin-2 (Fragment) OS=Talpa europaea GN=AQP2 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.902e-11
Identity = 40/104 (38.46%), Postives = 57/104 (54.81%), Query Frame = 3
Query:  234 SWSFYRAGIAEFIATFLFLYISVLTVMGVVKSNTKCSTVGIQGIAWAFGGMIFALIYCTAGISGGHINPAVTFGLFLARKLSLTRALFYMVMQCLGAICGAGVV 545
            S +F RA  AEF+AT +F++  + + +     N + S   +  IA AFG  I  L+     ISG HINPAVT    +   +S  RA FY+  Q LGA+ GA ++
Sbjct:    1 SIAFSRAVFAEFLATLIFVFFGLGSAL-----NWQQSLPSVLQIAMAFGLAIGTLVQALGHISGAHINPAVTVACLVGCHVSFLRAAFYVAAQLLGAVAGAALL 99          
The following BLAST results are available for this feature:
BLAST of FC932441 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 110
Match NameE-valueIdentityDescription
TIP31_ORYSJ1.373e-1139.36Probable aquaporin TIP3-1 OS=Oryza sativa subsp. j... [more]
TIP11_MAIZE1.373e-1132.30Aquaporin TIP1-1 OS=Zea mays GN=TIP1-1 PE=2 SV=1[more]
TIP31_MAIZE1.794e-1131.58Aquaporin TIP3-1 OS=Zea mays GN=TIP3-1 PE=2 SV=1[more]
TIP12_ORYSJ1.794e-1131.45Probable aquaporin TIP1-2 OS=Oryza sativa subsp. j... [more]
MIP_HUMAN2.343e-1129.11Lens fiber major intrinsic protein OS=Homo sapiens... [more]
AQPZ_PSEPK2.343e-1131.20Aquaporin Z OS=Pseudomonas putida (strain KT2440) ... [more]
TIP32_MAIZE3.059e-1130.32Aquaporin TIP3-2 OS=Zea mays GN=TIP3-2 PE=2 SV=1[more]
MIP_CAVPO3.059e-1129.75Lens fiber major intrinsic protein OS=Cavia porcel... [more]
AQP2_PROHA5.219e-1138.46Aquaporin-2 (Fragment) OS=Procavia capensis habess... [more]
AQP2_TALEU8.902e-1138.46Aquaporin-2 (Fragment) OS=Talpa europaea GN=AQP2 P... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34208F05EF PostHarveN Citrus clementina cDNA clone C34208F05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932441 ID=FC932441; Name=FC932441; organism=Citrus clementina; type=EST; length=727bp
GACTCCCGTAGCAAGATCAAACAGCTACACGCAAACGACTCAAATCTTTT
TTGTCTTTTAGCTAATTAAGTGAAGAAGAGCGAGCGAAAATGGAGGGCAA
AGAAGAGGACGTTAGATTAGGAGCCAATAAGTTCACTGAGAGGCAACCGA
TTGGAACGGCAGCTCAGAGCCAAGATGGAAAGGACTACGTTGAGCCGCCG
CCGGCACCACTCTTCGAGGAAGAAGAGCTCACGTCTTGGTCGTTTTACAG
GGCCGGTATAGCCGAGTTCATAGCCACTTTTCTTTTCTTGTACATCTCCG
TATTGACAGTGATGGGCGTCGTCAAGTCCAACACCAAGTGCTCAACCGTC
GGCATTCAAGGGATTGCATGGGCCTTCGGTGGCATGATCTTCGCGCTCAT
TTACTGCACAGCTGGCATCTCGGGTGGTCATATCAACCCGGCGGTGACAT
TCGGGCTGTTCTTGGCGAGGAAGCTGTCGTTGACACGTGCACTTTTCTAC
ATGGTGATGCAGTGTCTGGGAGCCATCTGTGGTGCTGGCGTTGTAAAGGG
TTTCATGGGTGCCGGCCAATACGGTCGGCTCGGCGGCGGTGCCAATGCTG
TAGCTCATGGCTACACCAAGGGTGATGGTCTTGGTGCCGAGATTATTGGT
ACTTTTGTTCTTGTCTACACAGTTTTCTCTGCCACTGACGCCAAACGTAG
CGCCAGAGACTCTCATNGTCCCTATTT
back to top