FC932444

Overview
NameFC932444
Unique NameFC932444
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length714
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932444 vs. ExPASy Swiss-Prot
Match: YIHU_ECOLI (Uncharacterized oxidoreductase yihU OS=Escherichia coli (strain K12) GN=yihU PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.051e-16
Identity = 57/194 (29.38%), Postives = 93/194 (47.94%), Query Frame = 2
Query:   77 VGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEIGNGAKMKLVVNMIMGCMMNTFSEGLVLTEKSGL 658
            + F+GLG MG  ++ NLL+ G ++ V++        LV  GAT   +PA+  K     I ML +     +V+F + GV E +      IDMST+    + K+   + +KG   ++ PV  +   A TG L++L+ G     + A   L  +G +    G  G G ++KL+ N +   +    +E  VL E   L
Sbjct:    4 IAFIGLGQMGSPMASNLLQQGHQLRVFDVNAEAVRHLVDKGATPAANPAQAAKDAEFIITMLPNGDLVRNVLFGENGVCEGLSTDALVIDMSTIHPLQTDKLIADMQAKGFSMMDVPVGRTSANAITGTLLLLAGGTAEQVERATPILMAMGSELINAGGPGMGIRVKLINNYMSIALNALSAEAAVLCEALNL 197          
BLAST of FC932444 vs. ExPASy Swiss-Prot
Match: YIHU_SALTY (Uncharacterized oxidoreductase yihU OS=Salmonella typhimurium GN=yihU PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.793e-16
Identity = 59/203 (29.06%), Postives = 95/203 (46.80%), Query Frame = 2
Query:   77 VGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEIGNGAKMKLVVNMIMGCMMNTFSEGLVLTEKSGLDPRTLLDVL 685
            + F+GLG MG  ++ NLL+ G +++V++        LV  GA    SPA+        I ML +     SV+F + GV E +      IDMST+    +  +   + SKG   ++ P+  +   A TG L++L+ G     + A   L  +G +    G  G G ++KL+ N +   +    +E  VL E  GL     L V+
Sbjct:    4 IAFIGLGQMGSPMASNLLKQGHQLSVFDVNPDAVQRLVDKGAQPASSPAQATIGAEFVITMLPNGDLVRSVLFGEQGVCETLSREALVIDMSTIHPLQTDNLIADMQSKGFSMMDVPIGRTSDNAITGTLLLLAGGTAEQVERATPVLMAMGNELVNTGGPGMGIRVKLINNYMSIALNALSAEAAVLCEALGLSFDVALKVM 206          
BLAST of FC932444 vs. ExPASy Swiss-Prot
Match: MMSB_MYCTU (Probable 3-hydroxyisobutyrate dehydrogenase OS=Mycobacterium tuberculosis GN=mmsB PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.418e-15
Identity = 59/203 (29.06%), Postives = 87/203 (42.86%), Query Frame = 2
Query:   77 VGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEIGNGAKMKLVVNMIMGCMMNTFSEGLVLTEKSGLDPRTLLDVL 685
            + FLGLG MG  +S NL+  G  V  ++   +      AHG  V  S  E + +  + I ML           D   VL    P   +ID ST+    + ++     S G   L+APVSG  + A    L  +  G+++    A   L  +  K    G  G G   K+  NM++       +E  VL EK GL  ++L DV+
Sbjct:    4 IAFLGLGNMGAPMSANLVGAGHVVRGFDPAPTAASGAAAHGVAVFRSAPEAVAEADVVITMLPTGEVVRRCYTD---VLAAARPATLFIDSSTISVTDAREVHALAESHGMLQLDAPVSGGVKGAAAATLAFMVGGDESTLRRARPVLEPMAGKIIHCGAAGAGQAAKVCNNMVLAVQQIAIAEAFVLAEKLGLSAQSLFDVI 203          
BLAST of FC932444 vs. ExPASy Swiss-Prot
Match: MMSB_MYCBO (Probable 3-hydroxyisobutyrate dehydrogenase OS=Mycobacterium bovis GN=mmsB PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.418e-15
Identity = 59/203 (29.06%), Postives = 87/203 (42.86%), Query Frame = 2
Query:   77 VGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEIGNGAKMKLVVNMIMGCMMNTFSEGLVLTEKSGLDPRTLLDVL 685
            + FLGLG MG  +S NL+  G  V  ++   +      AHG  V  S  E + +  + I ML           D   VL    P   +ID ST+    + ++     S G   L+APVSG  + A    L  +  G+++    A   L  +  K    G  G G   K+  NM++       +E  VL EK GL  ++L DV+
Sbjct:    4 IAFLGLGNMGAPMSANLVGAGHVVRGFDPAPTAASGAAAHGVAVFRSAPEAVAEADVVITMLPTGEVVRRCYTD---VLAAARPATLFIDSSTISVTDAREVHALAESHGMLQLDAPVSGGVKGAAAATLAFMVGGDESTLRRARPVLEPMAGKIIHCGAAGAGQAAKVCNNMVLAVQQIAIAEAFVLAEKLGLSAQSLFDVI 203          
BLAST of FC932444 vs. ExPASy Swiss-Prot
Match: YGBJ_ECOLI (Uncharacterized oxidoreductase ygbJ OS=Escherichia coli (strain K12) GN=ygbJ PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.884e-14
Identity = 51/210 (24.29%), Postives = 102/210 (48.57%), Query Frame = 2
Query:   68 KMEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSK--CDELVAHGAT-VGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLG-EIGNGAKMKLVVNMIMGCMMNTFSEGLVLTEKSGLDPRTLLDVL 685
            +  VG +GLG MG   +++ +R G  ++ W   L+   C  L   GA  V  + A   +K    + ++ + A    V+F + GV + + PG   +  ST+    + +I+ A+       L+APVSG    A  G++ ++++G    ++     L  +  K + +G E G G+ +K++  ++ G  +   +E + L  ++G+    + DV+
Sbjct:    6 EFHVGIVGLGSMGMGAALSYVRAG--LSTWGADLNSNACATLKEAGACGVSDNAATFAEKLDALLVLVVNAAQVKQVLFGETGVAQHLKPGTAVMVSSTIASADAQEIATALAGFDLEMLDAPVSGGAVKAANGEMTVMASGSDIAFERLAPVLEAVAGKVYRIGAEPGLGSTVKIIHQLLAGVHIAAGAEAMALAARAGIPLDVMYDVV 213          
BLAST of FC932444 vs. ExPASy Swiss-Prot
Match: Y1010_HAEIN (Uncharacterized oxidoreductase HI1010 OS=Haemophilus influenzae GN=HI1010 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.331e-14
Identity = 52/211 (24.64%), Postives = 105/211 (49.76%), Query Frame = 2
Query:   59 KNKKMEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGA-TVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLG-EIGNGAKMKLVVNMIMGCMMNTFSEGLVLTEKSGLDPRTLLDVL 685
            +N+   V  +GLG MG   +++ +  G      +      ++L A GA  V  +  +   +    + ++ + A A +V+F + G+ +++  G   +  ST+  + +  IS+ +T  G   L+APVSG    A  G++ ++++G K  ++     L+    K + +G EIG GA +K+V  ++ G  +   +E + L  K+G+    + DV+
Sbjct:    2 ENQNYSVAVIGLGSMGMGAAVSCINAGLTTYGIDLNPVALEKLKAAGAKAVAANGYDFAHELDAVVILVVNAAQANAVLFGENGIAKKLKAGTAVMVSSTMAAQDAQIISQKLTELGLIMLDAPVSGGAAKALKGEMTVMASGSKQAFELLQPVLDATAAKVYNIGEEIGLGATVKIVHQLLAGVHIAAGAEAMALASKAGIPLDVMYDVV 212          
BLAST of FC932444 vs. ExPASy Swiss-Prot
Match: Y770_MYCTU (Uncharacterized oxidoreductase Rv0770/MT0794 OS=Mycobacterium tuberculosis GN=Rv0770 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.571e-12
Identity = 52/195 (26.67%), Postives = 86/195 (44.10%), Query Frame = 2
Query:   77 VGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEIGNGAKMKLVVNMIMGCMMNTFSEGLVLTEKSGLD 661
            +G++GLG  G  ++  LL     +TV++  +      V  GAT   S ++V +   I+I +  D A   SV+    G+     PG      ST+   T++ ++  +  +G H ++APVSG    A  G+L ++   +   +       +         GE G G +MKL  NM+        +E   L E  GLD
Sbjct:   10 LGYIGLGNQGAPMAKRLLDWPGGLTVFDVRVEAMAPFVEGGATAAASVSDVAEADIISITVF-DDAQVSSVITADNGLATHAKPGTIVAIHSTIADTTAVDLAEKLKPQGIHIVDAPVSGGAAAAAKGELAVMVGADDEAFQRIKEPFSRWASLLIHAGEPGAGTRMKLARNMLTFVSYAAAAEAQRLAEACGLD 203          
The following BLAST results are available for this feature:
BLAST of FC932444 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
YIHU_ECOLI1.051e-1629.38Uncharacterized oxidoreductase yihU OS=Escherichia... [more]
YIHU_SALTY1.793e-1629.06Uncharacterized oxidoreductase yihU OS=Salmonella ... [more]
MMSB_MYCTU4.418e-1529.06Probable 3-hydroxyisobutyrate dehydrogenase OS=Myc... [more]
MMSB_MYCBO4.418e-1529.06Probable 3-hydroxyisobutyrate dehydrogenase OS=Myc... [more]
YGBJ_ECOLI4.884e-1424.29Uncharacterized oxidoreductase ygbJ OS=Escherichia... [more]
Y1010_HAEIN8.331e-1424.64Uncharacterized oxidoreductase HI1010 OS=Haemophil... [more]
Y770_MYCTU4.571e-1226.67Uncharacterized oxidoreductase Rv0770/MT0794 OS=My... [more]

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Properties
Property NameValue
Genbank descriptionC34208F08EF PostHarveN Citrus clementina cDNA clone C34208F08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932444 ID=FC932444; Name=FC932444; organism=Citrus clementina; type=EST; length=714bp
GAAGTAAGTAGATCTGAAAAGCGGAAAAAATTTAGAACACAGAGGAGGAA
GATATTGAAAAAACAAGAAAATGGAAGTGGGGTTTCTGGGTTTAGGAATT
ATGGGCAAGGCCATTTCTATGAACTTGCTTAGAAATGGATTCAAAGTTAC
TGTATGGAACAGGACTCTCTCTAAGTGTGATGAACTCGTGGCACACGGTG
CTACAGTTGGAGGAAGTCCAGCAGAAGTAATTAAAAAGTGTACGATTACT
ATTGGGATGTTAGCTGATCCTGCGGCTGCACTTTCGGTTGTCTTTGACAA
AGGTGGTGTTTTGGAGCAAATTTGTCCTGGGAAAGGTTACATTGACATGT
CAACAGTTGATCATGAAACTTCAATAAAGATCAGCCGGGCAATTACATCA
AAAGGCGGTCACTTCCTTGAAGCTCCAGTTTCAGGTAGCAAGCAGCCTGC
AGAAACTGGTCAACTAGTAATCCTTTCTGCTGGGGAGAAGGCACTCTATG
ATGAAGCAATTTCAGCTCTCAATGTAATTGGAAAGAAGGCCTTCTTTTTG
GGGGAGATCGGAAACGGAGCAAAAATGAAACTTGTTGTTAACATGATAAT
GGGCTGTATGATGAATACATTTTCTGAAGGACTTGTACTGACTGAAAAGA
GTGGACTTGACCCTCGCACTTTACTTGATGTACTGGACCTGGGTGGTATT
GCTAATCCCTATGT
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