FC932445

Overview
NameFC932445
Unique NameFC932445
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length709
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932445 vs. ExPASy Swiss-Prot
Match: RL15E_METM6 (50S ribosomal protein L15e OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rpl15e PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 6.992e-29
Identity = 62/140 (44.29%), Postives = 86/140 (61.43%), Query Frame = 3
Query:   66 AIHRASRPSRPDKARRLGYKAKQGYVIYXXXXXXXXXXXPVSKGATYGKPTNHGVNQLKYQRALKSTAEERVGRRAANLRVLNSYWINQDSTYKYYEVILVDPQHKAIRRDARINWICNPVHKHRESRGLTATGKKSRGI 485
            ++ R  RP+R D+AR LGYKAKQG V+            P  K +   KP+  G+N++   ++++  AEER  ++  NL VLNSYW+ QD   K+YEVILVD  H +I+ D   NW+C   HK R +RGLT+ GKK RG+
Sbjct:   35 SVIRVERPTRIDRARNLGYKAKQGIVVVRVSVRRGGLRKPRPKHSK--KPSTLGINKITMAKSIQRIAEERAAKKYPNLEVLNSYWVGQDGKQKWYEVILVDSCHPSIKSDKSYNWLCKGTHKGRATRGLTSAGKKGRGL 172          
BLAST of FC932445 vs. ExPASy Swiss-Prot
Match: RL15E_STAMF (50S ribosomal protein L15e OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rpl15e PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 9.132e-29
Identity = 73/183 (39.89%), Postives = 100/183 (54.64%), Query Frame = 3
Query:   27 LLRVRCWELHQLNAIHRASRPSRPDKARRLGYKAKQGYVIYXXXXXXXXXXXP-VSKGATYGKPTNHGVNQLKYQRALKSTAEERVGRRAANLRVLNSYWINQDSTYKYYEVILVDPQHKAIRRDARINWICNPVHKHRESRGLTATGKKSRGINKGHRYNNTKAGRRHTWKRQNTQSYWRYR 572
            L+R R  +  +  AI R  +P+R D+AR LGYKAKQG++I               +KG    +P   G+      ++L+  AEER  R+  NL VLNSY++ +D  YK+YEVILVDP H AI  D  I WIC   H+ R  RGLT+ GKK RG+ K       K   ++ WKR+  +   + R
Sbjct:   24 LMRQRLIKWRREPAIIRIEKPTRLDRARALGYKAKQGFIIVRVRVRKGGLRKQRPNKGR---RPKRMGIYGFAPSKSLRLIAEERAARKYPNLEVLNSYYVGEDGNYKWYEVILVDPHHPAICNDPDIKWICEKQHRRRVFRGLTSAGKKMRGLRKS---RGLKYTIKYKWKRKQKERLLKKR 200          
BLAST of FC932445 vs. ExPASy Swiss-Prot
Match: RL15E_METTH (50S ribosomal protein L15e OS=Methanobacterium thermoautotrophicum GN=rpl15e PE=3 SV=3)

HSP 1 Score: 127.102 bits (318), Expect = 9.132e-29
Identity = 68/160 (42.50%), Postives = 95/160 (59.38%), Query Frame = 3
Query:   18 IRFLLRVRCWELHQLNAIHRASRPSRPDKARRLGYKAKQGYVIYXXXXXXXXXXXPVSKGATYGKPTNHGVNQLKYQRALKSTAEERVGRRAANLRVLNSYWINQDSTYKYYEVILVDPQHKAIRRDARINWICNPVHKHRESRGLTATGKKSRGI-NKG 494
            +R L+  R  +  +   I R  RP+R D+AR LGY+AK GY++               K     +PT  GV ++   +++K  AEERV R+  N+ VLNSYW+ +D  YK+YEVILVDP H AI+ D +I WIC   H+ R  RGL + GKK+RG+ N+G
Sbjct:   18 VRELMWERAPKWRRDPVIKRIERPTRIDRARALGYRAKPGYIVVRTRVRRGSQRKTRFKAGR--RPTRMGVKKITTAKSIKRIAEERVARKYPNMEVLNSYWVWEDGKYKFYEVILVDPNHLAIKNDPKIYWICVKQHRGRVFRGLISEGKKNRGLRNRG 175          
BLAST of FC932445 vs. ExPASy Swiss-Prot
Match: RL15E_PYRAB (50S ribosomal protein L15e OS=Pyrococcus abyssi GN=rpl15e PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.193e-28
Identity = 70/157 (44.59%), Postives = 94/157 (59.87%), Query Frame = 3
Query:   27 LLRVRCWELHQLNAIHRASRPSRPDKARRLGYKAKQGYVIYXXXXXXXXXXXPVSKGATYGKPTNHGVNQLKYQRALKSTAEERVGRRAANLRVLNSYWINQDSTYKYYEVILVDPQHKAIRRDARINWICNPVHKHRESRGLTATGKKSRGI-NKG 494
            LL+ R  +  +  A+ R  RP+R D+AR LGY+AKQGYVI            P  KG    KP+  G  +   +++L+  AEE+  R+  NL VLNSYW+ +D  YK++EVI+VDP H  I+ D +I WI    HK R  RGLT+ GKK RG+ NKG
Sbjct:   22 LLKQRMIKWRREPAVVRIERPTRLDRARALGYQAKQGYVIVRVRVRRGGRKRPRWKGGR--KPSKMGQVKYSPKKSLQWIAEEKAARKFPNLEVLNSYWVGEDGMYKWFEVIMVDPHHPVIKSDPKIAWIALKHHKGRVFRGLTSAGKKGRGLRNKG 176          
BLAST of FC932445 vs. ExPASy Swiss-Prot
Match: RL15E_METM5 (50S ribosomal protein L15e OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rpl15e PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.558e-28
Identity = 61/140 (43.57%), Postives = 85/140 (60.71%), Query Frame = 3
Query:   66 AIHRASRPSRPDKARRLGYKAKQGYVIYXXXXXXXXXXXPVSKGATYGKPTNHGVNQLKYQRALKSTAEERVGRRAANLRVLNSYWINQDSTYKYYEVILVDPQHKAIRRDARINWICNPVHKHRESRGLTATGKKSRGI 485
            ++ R  RP+R D+AR LGYKAKQG V+            P  K +   KP   G+N++   ++++  AEER  ++  N+ VLNSYW+ QD   K+YEVILVDP   +I+ D   NW+C   HK R +RGLT+ GKK RG+
Sbjct:   35 SVIRIERPTRIDRARNLGYKAKQGIVVVRVSVRRGGLRKPRPKHSK--KPATMGINKITMAKSIQRIAEERAAKKYPNMEVLNSYWVGQDGKQKWYEVILVDPCQPSIKNDKSYNWLCKGTHKGRVTRGLTSAGKKGRGL 172          
BLAST of FC932445 vs. ExPASy Swiss-Prot
Match: RL15E_PYRHO (50S ribosomal protein L15e OS=Pyrococcus horikoshii GN=rpl15e PE=3 SV=2)

HSP 1 Score: 125.176 bits (313), Expect = 3.470e-28
Identity = 68/157 (43.31%), Postives = 94/157 (59.87%), Query Frame = 3
Query:   27 LLRVRCWELHQLNAIHRASRPSRPDKARRLGYKAKQGYVIYXXXXXXXXXXXPVSKGATYGKPTNHGVNQLKYQRALKSTAEERVGRRAANLRVLNSYWINQDSTYKYYEVILVDPQHKAIRRDARINWICNPVHKHRESRGLTATGKKSRGI-NKG 494
            LL+ R  +  +  ++ R  RP+R D+AR LGY+AKQGY+I            P  KG    KP+  G  +   +++L+  AEE+  R+  NL VLNSYW+ +D  YK++EVI+VDP H  I+ D +I WI    HK R  RGLT+ GKK RG+ NKG
Sbjct:   22 LLKQRMIKWRREPSVVRIERPTRLDRARALGYQAKQGYIIVRVRVRRGGRKRPRWKGGR--KPSKMGQVKYSPKKSLQWIAEEKAARKFPNLEVLNSYWVGEDGMYKWFEVIMVDPHHPVIKSDPKIAWIALKHHKGRVFRGLTSAGKKGRGLRNKG 176          
BLAST of FC932445 vs. ExPASy Swiss-Prot
Match: RL15E_PYRFU (50S ribosomal protein L15e OS=Pyrococcus furiosus GN=rpl15e PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.470e-28
Identity = 69/157 (43.95%), Postives = 93/157 (59.24%), Query Frame = 3
Query:   27 LLRVRCWELHQLNAIHRASRPSRPDKARRLGYKAKQGYVIYXXXXXXXXXXXPVSKGATYGKPTNHGVNQLKYQRALKSTAEERVGRRAANLRVLNSYWINQDSTYKYYEVILVDPQHKAIRRDARINWICNPVHKHRESRGLTATGKKSRGI-NKG 494
            LL+ R  +  +   + R  RP+R D+AR LGY+AKQGYVI            P  KG    KP+  G  +   +++L+  AEE+  R+  NL VLNSYW+ +D  YK++EVI+VDP H  I+ D +I WI    HK R  RGLT+ GKK RG+ NKG
Sbjct:   22 LLKQRMIKWRREPVVVRIERPTRLDRARALGYQAKQGYVIVRVRVRKGGRKRPRWKGGR--KPSKMGQVKYSPKKSLQWIAEEKAARKFPNLEVLNSYWVGEDGMYKWFEVIMVDPHHPVIKSDPKIAWIALKHHKGRVFRGLTSAGKKGRGLRNKG 176          
BLAST of FC932445 vs. ExPASy Swiss-Prot
Match: RL15E_METMP (50S ribosomal protein L15e OS=Methanococcus maripaludis GN=rpl15e PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.532e-28
Identity = 65/160 (40.62%), Postives = 92/160 (57.50%), Query Frame = 3
Query:   66 AIHRASRPSRPDKARRLGYKAKQGYVIYXXXXXXXXXXXPVSKGATYGKPTNHGVNQLKYQRALKSTAEERVGRRAANLRVLNSYWINQDSTYKYYEVILVDPQHKAIRRDARINWICNPVHKHRESRGLTATGKKSRGI-NKGHRYNNTKAGRRHTWKR 542
            ++ R  RP+R D+AR LGYKAKQG V+            P  K +   KP   G+N++   ++++  AEER  +R  N+ VLNSYW+ QD   K+YE+ILVDP H +I+ D   +W+    HK R +RGLT+ GKK RG+  KG      + G R   K+
Sbjct:   35 SVLRIERPTRIDRARNLGYKAKQGIVVVRVSVRRGGLRKPRPKHSK--KPATLGINKITMAKSIQRIAEERAAKRYPNMEVLNSYWVGQDGKQKWYEIILVDPCHPSIKNDKSYSWLSTGNHKGRANRGLTSAGKKGRGLMYKGKGAEKARPGVRANGKK 192          
BLAST of FC932445 vs. ExPASy Swiss-Prot
Match: RL15E_SULTO (50S ribosomal protein L15e OS=Sulfolobus tokodaii GN=rpl15e PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 5.919e-28
Identity = 65/183 (35.52%), Postives = 99/183 (54.10%), Query Frame = 3
Query:    6 QSDVIRFLLRVRCWELHQLNAIHRASRPSRPDKARRLGYKAKQGYVIYXXXXXXXXXXXPVSKGATYGKPTNHGVNQLKYQRALKSTAEERVGRRAANLRVLNSYWINQDSTYKYYEVILVDPQHKAIRRDARINWICNPVHKHRESRGLTATGKKSRGINKGHRYNNTKAGRRHTWKRQNTQ 554
            QSD  + +LR R  E  +  A+ R  +P+R ++AR +GYKAKQG+V+            P        +P   GV      +  +  AEE+  R+  NL VL SY++ +D  YKYYE+I+VDP H  I+ D  + W+ +P ++ R  RGLT+ GKK+RG+ K      T    +H WK++  +
Sbjct:   14 QSDEWKKVLRQRLIEWRKSPAVERIDKPTRLNRARAIGYKAKQGFVVVRVRVRRGGLNKPRPNSGR--RPKRMGVYGYSPAKGYRWIAEEKAARKFPNLEVLGSYYVGEDGMYKYYEIIMVDPNHPVIKSDPNLKWLQDPANRKRVFRGLTSAGKKARGLLKSRGLKGTV---KHKWKKKEKE 191          
BLAST of FC932445 vs. ExPASy Swiss-Prot
Match: RL15E_HALSA (50S ribosomal protein L15e OS=Halobacterium salinarium GN=rpl15e PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 5.919e-28
Identity = 64/144 (44.44%), Postives = 88/144 (61.11%), Query Frame = 3
Query:   66 AIHRASRPSRPDKARRLGYKAKQGYVIYXXXXXXXXXXXPVSKGATYGKPTNHGVNQLKYQRALKSTAEERVGRRAANLRVLNSYWINQDSTYKYYEVILVDPQHKAIRRDARINWICNPVHKHRESRGLTATGKKSRGI-NKG 494
            AI R  RP+R DKAR LGYKAKQG V+               K     K    GVN++   + L+  AEER  R+  NLR LNSYW+ +D + K++E IL+DP+H AI+ D  +NWIC+  HK+R  RG T+ G+++RG+ N+G
Sbjct:   37 AIERVDRPTRLDKARELGYKAKQGVVVVRVSVRKGTARKSRFKAGRRTK--RQGVNRIGRAKNLQRIAEERASRKYVNLRTLNSYWVGEDGSQKWFEAILLDPEHGAIQNDDDLNWICDDSHKNRVFRGKTSAGRRARGLQNRG 178          
The following BLAST results are available for this feature:
BLAST of FC932445 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 93
Match NameE-valueIdentityDescription
RL15E_METM66.992e-2944.2950S ribosomal protein L15e OS=Methanococcus maripa... [more]
RL15E_STAMF9.132e-2939.8950S ribosomal protein L15e OS=Staphylothermus mari... [more]
RL15E_METTH9.132e-2942.5050S ribosomal protein L15e OS=Methanobacterium the... [more]
RL15E_PYRAB1.193e-2844.5950S ribosomal protein L15e OS=Pyrococcus abyssi GN... [more]
RL15E_METM51.558e-2843.5750S ribosomal protein L15e OS=Methanococcus maripa... [more]
RL15E_PYRHO3.470e-2843.3150S ribosomal protein L15e OS=Pyrococcus horikoshi... [more]
RL15E_PYRFU3.470e-2843.9550S ribosomal protein L15e OS=Pyrococcus furiosus ... [more]
RL15E_METMP4.532e-2840.6350S ribosomal protein L15e OS=Methanococcus maripa... [more]
RL15E_SULTO5.919e-2835.5250S ribosomal protein L15e OS=Sulfolobus tokodaii ... [more]
RL15E_HALSA5.919e-2844.4450S ribosomal protein L15e OS=Halobacterium salina... [more]

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Properties
Property NameValue
Genbank descriptionC34208F09EF PostHarveN Citrus clementina cDNA clone C34208F09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932445 ID=FC932445; Name=FC932445; organism=Citrus clementina; type=EST; length=709bp
AGAAGCAGTCCGATGTGATTCGCTTCCTGCTGCGCGTCCGATGCTGGGAG
CTCCACCAGCTGAACGCCATCCACCGTGCCTCGCGTCCCTCGCGCCCCGA
CAAGGCCCGTCGTCTCGGTTACAAGGCCAAGCAGGGTTACGTTATCTACC
GTGCCCGTGTCCGCCGCGGTGGCCGCAAACGCCCTGTCTCCAAGGGTGCC
ACCTACGGCAAGCCCACCAACCACGGTGTCAACCAGCTCAAGTACCAGCG
TGCTCTCAAGTCCACCGCTGAGGAGCGTGTTGGCCGTCGCGCTGCTAACT
TGCGCGTCCTGAACTCCTACTGGATCAACCAGGACTCCACCTACAAGTAC
TACGAGGTCATCCTTGTCGACCCCCAGCACAAGGCCATCCGCCGTGATGC
CCGCATCAACTGGATCTGCAACCCCGTTCACAAGCACCGCGAGTCCCGTG
GCCTCACCGCCACTGGCAAGAAGTCCCGTGGTATCAACAAGGGTCACCGT
TACAACAACACCAAGGCTGGTCGCCGCCACACCTGGAAGCGCCAGAACAC
CCAGAGCTACTGGCGTTACCGTTAAGTGCGGTAGTGCACTTTCACAGTGG
TTTCGGCTGGATCATGTTGGCTACGGCATGTGGTCATTTATTCAGGCACT
TTCCCAGACAGTGTTATCCACGCTGGGCTCAACTTTAATGCAGACCAGCC
GGTTCTGTT
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