FC932448

Overview
NameFC932448
Unique NameFC932448
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length745
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC932448_ssr153 microsatellite FC932448_ssr153:153..170. BLAST: Citrus ESTs to Populus V2 proteins
Ccv1_Contig11434 contig Ccv1_Contig11434:118..866. BLAST: Citrus Unigene V1 Contigs to Populus V2 proteins
Homology
BLAST of FC932448 vs. ExPASy Swiss-Prot
Match: NUOB_XYLFT (NADH-quinone oxidoreductase subunit B OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964) GN=nuoB PE=3 SV=2)

HSP 1 Score: 222.631 bits (566), Expect = 1.747e-57
Identity = 103/146 (70.55%), Postives = 120/146 (82.19%), Query Frame = 1
Query:  244 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISTGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNRRRDL 681
            +V + +D ++N+ R GS+WPM+FGLACCAVEMMH GAAR DLDR+GI+FRPSPRQSDVM+VAGTL NKMAPALRKVYDQMPDP+WVIS GSCAN              CDRIVPVD+YVPGCPPTAEAL+YGILQLQKK+ R + +
Sbjct:   37 YVTTSVDALLNWARTGSMWPMTFGLACCAVEMMHAGAARLDLDRYGIVFRPSPRQSDVMIVAGTLVNKMAPALRKVYDQMPDPKWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALVYGILQLQKKIWRTKTI 182          
BLAST of FC932448 vs. ExPASy Swiss-Prot
Match: NUOB_XYLF2 (NADH-quinone oxidoreductase subunit B OS=Xylella fastidiosa (strain M23) GN=nuoB PE=3 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 1.747e-57
Identity = 103/146 (70.55%), Postives = 120/146 (82.19%), Query Frame = 1
Query:  244 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISTGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNRRRDL 681
            +V + +D ++N+ R GS+WPM+FGLACCAVEMMH GAAR DLDR+GI+FRPSPRQSDVM+VAGTL NKMAPALRKVYDQMPDP+WVIS GSCAN              CDRIVPVD+YVPGCPPTAEAL+YGILQLQKK+ R + +
Sbjct:   37 YVTTSVDALLNWARTGSMWPMTFGLACCAVEMMHAGAARLDLDRYGIVFRPSPRQSDVMIVAGTLVNKMAPALRKVYDQMPDPKWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALVYGILQLQKKIWRTKTI 182          
BLAST of FC932448 vs. ExPASy Swiss-Prot
Match: NUOB_VESOH (NADH-quinone oxidoreductase subunit B OS=Vesicomyosocius okutanii subsp. Calyptogena okutanii (strain HA) GN=nuoB PE=3 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 1.747e-57
Identity = 103/142 (72.54%), Postives = 117/142 (82.39%), Query Frame = 1
Query:  244 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISTGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNR 669
            FV   LD V+N+ R GS+WPM+FGLACCAVEMM  G++RYDLDRFGI+FRP+PRQSD+M+VAGTLTNKMAPALRKVYDQMP+P+WVIS GSCAN              CDRIVPVDIYVPGCPPTAEALLYGI+QLQ K+ R
Sbjct:   11 FVTMSLDRVINWARTGSLWPMTFGLACCAVEMMEAGSSRYDLDRFGIVFRPTPRQSDLMIVAGTLTNKMAPALRKVYDQMPEPKWVISMGSCANGGGYYHYSYAVIRGCDRIVPVDIYVPGCPPTAEALLYGIMQLQDKIRR 152          
BLAST of FC932448 vs. ExPASy Swiss-Prot
Match: NUOB_STRMK (NADH-quinone oxidoreductase subunit B OS=Stenotrophomonas maltophilia (strain K279a) GN=nuoB PE=3 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 1.747e-57
Identity = 102/146 (69.86%), Postives = 120/146 (82.19%), Query Frame = 1
Query:  244 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISTGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNRRRDL 681
            FV + +D ++N+ R GS+WPM+FGLACCAVEMMH GAAR DLDR+G++FRPSPRQSDVM+VAGTL NKMAPALRKVYDQMPDP+WVIS GSCAN              CDR+VPVD+YVPGCPPTAEAL+YGILQLQKK+ R + +
Sbjct:   37 FVTTSVDALLNWARTGSMWPMTFGLACCAVEMMHAGAARLDLDRYGVVFRPSPRQSDVMIVAGTLVNKMAPALRKVYDQMPDPKWVISMGSCANGGGYYHYSYSVVRGCDRVVPVDVYVPGCPPTAEALVYGILQLQKKIWRTQTI 182          
BLAST of FC932448 vs. ExPASy Swiss-Prot
Match: NUOB_STRM5 (NADH-quinone oxidoreductase subunit B OS=Stenotrophomonas maltophilia (strain R551-3) GN=nuoB PE=3 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 1.747e-57
Identity = 102/146 (69.86%), Postives = 120/146 (82.19%), Query Frame = 1
Query:  244 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISTGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNRRRDL 681
            FV + +D ++N+ R GS+WPM+FGLACCAVEMMH GAAR DLDR+G++FRPSPRQSDVM+VAGTL NKMAPALRKVYDQMPDP+WVIS GSCAN              CDR+VPVD+YVPGCPPTAEAL+YGILQLQKK+ R + +
Sbjct:   37 FVTTSVDALLNWARTGSMWPMTFGLACCAVEMMHAGAARLDLDRYGVVFRPSPRQSDVMIVAGTLVNKMAPALRKVYDQMPDPKWVISMGSCANGGGYYHYSYSVVRGCDRVVPVDVYVPGCPPTAEALVYGILQLQKKIWRTQTI 182          
BLAST of FC932448 vs. ExPASy Swiss-Prot
Match: NUOB_RALEJ (NADH-quinone oxidoreductase subunit B OS=Ralstonia eutropha (strain JMP134) GN=nuoB PE=3 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 1.747e-57
Identity = 102/142 (71.83%), Postives = 116/142 (81.69%), Query Frame = 1
Query:  244 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISTGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNR 669
            FV +  D ++N+ R GS+WPM+FGLACCAVEMMH GAARYDLDRFG++FRPSPRQSDVM+VAGTL NKMAPALRKVYDQM +PRWVIS GSCAN              CDRIVPVDIYVPGCPPTAEAL+YG++QLQ K+ R
Sbjct:   11 FVTTTADKLINWTRTGSLWPMTFGLACCAVEMMHAGAARYDLDRFGVVFRPSPRQSDVMIVAGTLCNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGVIQLQNKIKR 152          
BLAST of FC932448 vs. ExPASy Swiss-Prot
Match: NUOB2_NITMU (NADH-quinone oxidoreductase subunit B 2 OS=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) GN=nuoB2 PE=3 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 1.747e-57
Identity = 105/142 (73.94%), Postives = 117/142 (82.39%), Query Frame = 1
Query:  244 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISTGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNR 669
            FV + LD V+N+ R GS+WPM+FGLACCAVEMM  GA+RYDLDRFGI+FRPSPRQSDVM+VAGTL NKMAPALRKVYDQM +PRWVIS GSCAN              CDRIVPVDIYVPGCPPTAEALLYGI+QLQ K++R
Sbjct:   11 FVTTSLDSVINWGRTGSMWPMTFGLACCAVEMMQAGASRYDLDRFGIVFRPSPRQSDVMIVAGTLCNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGIIQLQNKIHR 152          
BLAST of FC932448 vs. ExPASy Swiss-Prot
Match: NUOB_XYLFM (NADH-quinone oxidoreductase subunit B OS=Xylella fastidiosa (strain M12) GN=nuoB PE=3 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 2.281e-57
Identity = 103/146 (70.55%), Postives = 120/146 (82.19%), Query Frame = 1
Query:  244 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISTGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNRRRDL 681
            +V + +D ++N+ R GS+WPM+FGLACCAVEMMH GAAR DLDR+GI+FRPSPRQSDVM+VAGTL NKMAPALRKVYDQMPDP+WVIS GSCAN              CDRIVPVD+YVPGCPPTAEAL+YGILQLQKK+ R + +
Sbjct:   37 YVTTSVDALLNWARTGSMWPMTFGLACCAVEMMHAGAARLDLDRYGIVFRPSPRQSDVMIVAGTLVNKMAPALRKVYDQMPDPKWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALVYGILQLQKKIWRTQTI 182          
BLAST of FC932448 vs. ExPASy Swiss-Prot
Match: NUOB_XANCP (NADH-quinone oxidoreductase subunit B OS=Xanthomonas campestris pv. campestris GN=nuoB PE=3 SV=2)

HSP 1 Score: 222.246 bits (565), Expect = 2.281e-57
Identity = 103/146 (70.55%), Postives = 120/146 (82.19%), Query Frame = 1
Query:  244 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISTGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNRRRDL 681
            +V + +D ++N+ R GS+WPM+FGLACCAVEMMH GAAR DLDR+G++FRPSPRQSDVM+VAGTL NKMAPALRKVYDQMPDP+WVIS GSCAN              CDRIVPVDIYVPGCPPTAEAL+YGILQLQKK+ R + +
Sbjct:   37 YVTTSVDALLNWARTGSMWPMTFGLACCAVEMMHAGAARLDLDRYGVVFRPSPRQSDVMIVAGTLVNKMAPALRKVYDQMPDPKWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALVYGILQLQKKIWRTQTI 182          
BLAST of FC932448 vs. ExPASy Swiss-Prot
Match: NUOB_XANCB (NADH-quinone oxidoreductase subunit B OS=Xanthomonas campestris pv. campestris (strain B100) GN=nuoB PE=3 SV=2)

HSP 1 Score: 222.246 bits (565), Expect = 2.281e-57
Identity = 103/146 (70.55%), Postives = 120/146 (82.19%), Query Frame = 1
Query:  244 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISTGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNRRRDL 681
            +V + +D ++N+ R GS+WPM+FGLACCAVEMMH GAAR DLDR+G++FRPSPRQSDVM+VAGTL NKMAPALRKVYDQMPDP+WVIS GSCAN              CDRIVPVDIYVPGCPPTAEAL+YGILQLQKK+ R + +
Sbjct:   37 YVTTSVDALLNWARTGSMWPMTFGLACCAVEMMHAGAARLDLDRYGVVFRPSPRQSDVMIVAGTLVNKMAPALRKVYDQMPDPKWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALVYGILQLQKKIWRTQTI 182          
The following BLAST results are available for this feature:
BLAST of FC932448 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NUOB_XYLFT1.747e-5770.55NADH-quinone oxidoreductase subunit B OS=Xylella f... [more]
NUOB_XYLF21.747e-5770.55NADH-quinone oxidoreductase subunit B OS=Xylella f... [more]
NUOB_VESOH1.747e-5772.54NADH-quinone oxidoreductase subunit B OS=Vesicomyo... [more]
NUOB_STRMK1.747e-5769.86NADH-quinone oxidoreductase subunit B OS=Stenotrop... [more]
NUOB_STRM51.747e-5769.86NADH-quinone oxidoreductase subunit B OS=Stenotrop... [more]
NUOB_RALEJ1.747e-5771.83NADH-quinone oxidoreductase subunit B OS=Ralstonia... [more]
NUOB2_NITMU1.747e-5773.94NADH-quinone oxidoreductase subunit B 2 OS=Nitroso... [more]
NUOB_XYLFM2.281e-5770.55NADH-quinone oxidoreductase subunit B OS=Xylella f... [more]
NUOB_XANCP2.281e-5770.55NADH-quinone oxidoreductase subunit B OS=Xanthomon... [more]
NUOB_XANCB2.281e-5770.55NADH-quinone oxidoreductase subunit B OS=Xanthomon... [more]

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Properties
Property NameValue
Genbank descriptionC34208F12EF PostHarveN Citrus clementina cDNA clone C34208F12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932448 ID=FC932448; Name=FC932448; organism=Citrus clementina; type=EST; length=745bp
GGCCGGGGACACCCCCAAAACACAAGCCCAAAAAAAAAAAAAAAAACTAT
GGCGGTACTCACCAAAAACACTGCCACGCGCCTCCCTCTCCTCCTCTCGC
AACGCGCCGCCTGTCTCCACACGACCGTCCCCTCTCTCTCCTCGGCCTCC
GGCTCCTCCTCCTCCTCCTCGCAGCCCACCTCCTACGCTCGCCCTCCACC
GCCCTCGACCACAAGTCCAGGCGGTATCTCAAAGACGGCGGAATTCGTGA
TCTCTAAATTGGATGATGTCGTCAACTATATTCGTCGCGGCTCCATCTGG
CCCATGTCCTTCGGGCTGGCCTGCTGCGCCGTCGAGATGATGCACACCGG
TGCTGCTCGTTACGATTTAGATCGATTCGGTATCATTTTCAGGCCCAGCC
CTCGCCAATCCGATGTCATGGTCGTAGCTGGCACACTCACAAACAAGATG
GCCCCTGCCCTTCGCAAGGTTTATGATCAAATGCCAGATCCTAGGTGGGT
CATTTCTACGGGAAGCTGTGCAAATGGTGGTGGATATTATCATTACTCTT
ACTCTGTTGTTCGGGGTTGCGATAGGATTGTCCCCGTGGACATCTATGTT
CCGGGCTGCCCTCCTACTGCTGAGGCCCTACTCTATGGAATTCTCCAACT
GCAGAAAAAGATGAACAGGCGCAGAGATTTGTATTATTGGTGGACCAAGT
GAGAAAAGCTCAAGTGGCTCCTTGGCAGTTACACTCGACTATTAT
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