FC932448

Overview
NameFC932448
Unique NameFC932448
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length745
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC932448 vs. ExPASy Swiss-Prot
Match: NUOB_PSEPW (NADH-quinone oxidoreductase subunit B OS=Pseudomonas putida (strain W619) GN=nuoB PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 7.390e-32
Identity = 69/147 (46.94%), Postives = 96/147 (65.31%), Query Frame = 1 
Query:  250 ISKLDDV----VNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGI-IFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISTGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNRRR 675
            + KL+DV    VN+ R+ S+WP +FGL+CC VEM     A +D+ RFG  + R SPRQ+D MV+AGT   KMAP ++++Y+QM +P+WVIS GSCAN               D+ +PVD+YVPGCPP  EA L G++ LQ+ + + R
Sbjct:   40 MGKLEDVLRGAVNWGRKNSLWPYNFGLSCCYVEMTTAFTAPHDIARFGAEVIRASPRQADFMVIAGTCFIKMAPIIQRLYEQMLEPKWVISMGSCAN-SGGMYDIYSVVQGVDKFLPVDVYVPGCPPRPEAFLQGLMLLQESIGQER 185
[Close]
BLAST of FC932448 vs. ExPASy Swiss-Prot
Match: NUOB_PSEPK (NADH-quinone oxidoreductase subunit B OS=Pseudomonas putida (strain KT2440) GN=nuoB PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 7.390e-32
Identity = 69/147 (46.94%), Postives = 96/147 (65.31%), Query Frame = 1 
Query:  250 ISKLDDV----VNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGI-IFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISTGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNRRR 675
            + KL+DV    VN+ R+ S+WP +FGL+CC VEM     A +D+ RFG  + R SPRQ+D MV+AGT   KMAP ++++Y+QM +P+WVIS GSCAN               D+ +PVD+YVPGCPP  EA L G++ LQ+ + + R
Sbjct:   40 MGKLEDVLRGAVNWGRKNSLWPYNFGLSCCYVEMTTAFTAPHDIARFGAEVIRASPRQADFMVIAGTCFVKMAPIIQRLYEQMLEPKWVISMGSCAN-SGGMYDIYSVVQGVDKFLPVDVYVPGCPPRPEAFLQGLMLLQESIGQER 185
[Close]
BLAST of FC932448 vs. ExPASy Swiss-Prot
Match: NUOB_PSEPG (NADH-quinone oxidoreductase subunit B OS=Pseudomonas putida (strain GB-1) GN=nuoB PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 7.390e-32
Identity = 69/147 (46.94%), Postives = 96/147 (65.31%), Query Frame = 1 
Query:  250 ISKLDDV----VNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGI-IFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISTGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNRRR 675
            + KL+DV    VN+ R+ S+WP +FGL+CC VEM     A +D+ RFG  + R SPRQ+D MV+AGT   KMAP ++++Y+QM +P+WVIS GSCAN               D+ +PVD+YVPGCPP  EA L G++ LQ+ + + R
Sbjct:   40 MGKLEDVLRGAVNWGRKNSLWPYNFGLSCCYVEMTTAFTAPHDIARFGAEVIRASPRQADFMVIAGTCFVKMAPIIQRLYEQMLEPKWVISMGSCAN-SGGMYDIYSVVQGVDKFLPVDVYVPGCPPRPEAFLQGLMLLQESIGQER 185
[Close]
BLAST of FC932448 vs. ExPASy Swiss-Prot
Match: NUOB_PSEPF (NADH-quinone oxidoreductase subunit B OS=Pseudomonas fluorescens (strain Pf0-1) GN=nuoB PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 7.390e-32
Identity = 69/147 (46.94%), Postives = 96/147 (65.31%), Query Frame = 1 
Query:  250 ISKLDDV----VNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGI-IFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISTGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNRRR 675
            + KL+DV    VN+ R+ S+WP +FGL+CC VEM     A +D+ RFG  + R SPRQ+D MV+AGT   KMAP ++++Y+QM +P+WVIS GSCAN               D+ +PVD+YVPGCPP  EA L G++ LQ+ + + R
Sbjct:   39 MGKLEDVLSGAVNWGRKNSLWPYNFGLSCCYVEMTTAFTAPHDIARFGAEVIRASPRQADFMVIAGTCFIKMAPIIQRLYEQMLEPKWVISMGSCAN-SGGMYDIYSVVQGVDKFLPVDVYVPGCPPRPEAFLQGLMLLQESIGQER 184
[Close]
BLAST of FC932448 vs. ExPASy Swiss-Prot
Match: NUOB_PSEP1 (NADH-quinone oxidoreductase subunit B OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=nuoB PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 7.390e-32
Identity = 69/147 (46.94%), Postives = 96/147 (65.31%), Query Frame = 1 
Query:  250 ISKLDDV----VNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGI-IFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISTGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNRRR 675
            + KL+DV    VN+ R+ S+WP +FGL+CC VEM     A +D+ RFG  + R SPRQ+D MV+AGT   KMAP ++++Y+QM +P+WVIS GSCAN               D+ +PVD+YVPGCPP  EA L G++ LQ+ + + R
Sbjct:   40 MGKLEDVLRGAVNWGRKNSLWPYNFGLSCCYVEMTTAFTAPHDIARFGAEVIRASPRQADFMVIAGTCFVKMAPIIQRLYEQMLEPKWVISMGSCAN-SGGMYDIYSVVQGVDKFLPVDVYVPGCPPRPEAFLQGLMLLQESIGQER 185
[Close]
BLAST of FC932448 vs. ExPASy Swiss-Prot
Match: NUOB_PSEF5 (NADH-quinone oxidoreductase subunit B OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=nuoB PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 7.390e-32
Identity = 69/147 (46.94%), Postives = 96/147 (65.31%), Query Frame = 1 
Query:  250 ISKLDDV----VNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGI-IFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISTGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNRRR 675
            + KL+DV    VN+ R+ S+WP +FGL+CC VEM     A +D+ RFG  + R SPRQ+D MV+AGT   KMAP ++++Y+QM +P+WVIS GSCAN               D+ +PVD+YVPGCPP  EA L G++ LQ+ + + R
Sbjct:   39 MGKLEDVLSGAVNWGRKNSLWPYNFGLSCCYVEMTTAFTAPHDIARFGAEVIRASPRQADFMVIAGTCFIKMAPIIQRLYEQMLEPKWVISMGSCAN-SGGMYDIYSVVQGVDKFLPVDVYVPGCPPRPEAFLQGLMLLQESIGQER 184
[Close]
BLAST of FC932448 vs. ExPASy Swiss-Prot
Match: NUOB_PSEE4 (NADH-quinone oxidoreductase subunit B OS=Pseudomonas entomophila (strain L48) GN=nuoB PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 7.390e-32
Identity = 69/147 (46.94%), Postives = 96/147 (65.31%), Query Frame = 1 
Query:  250 ISKLDDV----VNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGI-IFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISTGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNRRR 675
            + KL+DV    VN+ R+ S+WP +FGL+CC VEM     A +D+ RFG  + R SPRQ+D MV+AGT   KMAP ++++Y+QM +P+WVIS GSCAN               D+ +PVD+YVPGCPP  EA L G++ LQ+ + + R
Sbjct:   40 MGKLEDVLRGAVNWGRKNSLWPYNFGLSCCYVEMTTAFTAPHDIARFGAEVIRASPRQADFMVIAGTCFVKMAPIIQRLYEQMLEPKWVISMGSCAN-SGGMYDIYSVVQGVDKFLPVDVYVPGCPPRPEAFLQGLMLLQESIGQER 185
[Close]
BLAST of FC932448 vs. ExPASy Swiss-Prot
Match: NUOB_PSEAE (NADH-quinone oxidoreductase subunit B OS=Pseudomonas aeruginosa GN=nuoB PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 7.390e-32
Identity = 68/147 (46.26%), Postives = 96/147 (65.31%), Query Frame = 1 
Query:  250 ISKLDDV----VNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGI-IFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISTGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNRRR 675
            + KL+DV    VN+ R+ S+WP +FGL+CC VEM     A +D+ RFG  + R SPRQ+D MV+AGT   KMAP ++++Y+QM +P+WVIS GSCAN               D+ +PVD+Y+PGCPP  EA L G++ LQ+ + + R
Sbjct:   40 MGKLEDVLNSTVNWGRKNSLWPYNFGLSCCYVEMTTAFTAPHDIARFGAEVIRASPRQADFMVIAGTCFIKMAPVIQRLYEQMLEPKWVISMGSCAN-SGGMYDIYSVVQGVDKFLPVDVYIPGCPPRPEAFLQGLMLLQESIGQER 185
[Close]
BLAST of FC932448 vs. ExPASy Swiss-Prot
Match: NUOB_PSEAB (NADH-quinone oxidoreductase subunit B OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=nuoB PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 7.390e-32
Identity = 68/147 (46.26%), Postives = 96/147 (65.31%), Query Frame = 1 
Query:  250 ISKLDDV----VNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGI-IFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISTGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNRRR 675
            + KL+DV    VN+ R+ S+WP +FGL+CC VEM     A +D+ RFG  + R SPRQ+D MV+AGT   KMAP ++++Y+QM +P+WVIS GSCAN               D+ +PVD+Y+PGCPP  EA L G++ LQ+ + + R
Sbjct:   40 MGKLEDVLNSTVNWGRKNSLWPYNFGLSCCYVEMTTAFTAPHDIARFGAEVIRASPRQADFMVIAGTCFIKMAPVIQRLYEQMLEPKWVISMGSCAN-SGGMYDIYSVVQGVDKFLPVDVYIPGCPPRPEAFLQGLMLLQESIGQER 185
[Close]
BLAST of FC932448 vs. ExPASy Swiss-Prot
Match: NUOB_PSEA8 (NADH-quinone oxidoreductase subunit B OS=Pseudomonas aeruginosa (strain LESB58) GN=nuoB PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 7.390e-32
Identity = 68/147 (46.26%), Postives = 96/147 (65.31%), Query Frame = 1 
Query:  250 ISKLDDV----VNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGI-IFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISTGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNRRR 675
            + KL+DV    VN+ R+ S+WP +FGL+CC VEM     A +D+ RFG  + R SPRQ+D MV+AGT   KMAP ++++Y+QM +P+WVIS GSCAN               D+ +PVD+Y+PGCPP  EA L G++ LQ+ + + R
Sbjct:   40 MGKLEDVLNSTVNWGRKNSLWPYNFGLSCCYVEMTTAFTAPHDIARFGAEVIRASPRQADFMVIAGTCFIKMAPVIQRLYEQMLEPKWVISMGSCAN-SGGMYDIYSVVQGVDKFLPVDVYIPGCPPRPEAFLQGLMLLQESIGQER 185
The following BLAST results are available for this feature:
BLAST of FC932448 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NUOB_PSEPW7.390e-3246.94NADH-quinone oxidoreductase subunit B OS=Pseudomon... [more]
NUOB_PSEPK7.390e-3246.94NADH-quinone oxidoreductase subunit B OS=Pseudomon... [more]
NUOB_PSEPG7.390e-3246.94NADH-quinone oxidoreductase subunit B OS=Pseudomon... [more]
NUOB_PSEPF7.390e-3246.94NADH-quinone oxidoreductase subunit B OS=Pseudomon... [more]
NUOB_PSEP17.390e-3246.94NADH-quinone oxidoreductase subunit B OS=Pseudomon... [more]
NUOB_PSEF57.390e-3246.94NADH-quinone oxidoreductase subunit B OS=Pseudomon... [more]
NUOB_PSEE47.390e-3246.94NADH-quinone oxidoreductase subunit B OS=Pseudomon... [more]
NUOB_PSEAE7.390e-3246.26NADH-quinone oxidoreductase subunit B OS=Pseudomon... [more]
NUOB_PSEAB7.390e-3246.26NADH-quinone oxidoreductase subunit B OS=Pseudomon... [more]
NUOB_PSEA87.390e-3246.26NADH-quinone oxidoreductase subunit B OS=Pseudomon... [more]

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Properties
Property NameValue
Genbank descriptionC34208F12EF PostHarveN Citrus clementina cDNA clone C34208F12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932448 ID=FC932448; Name=FC932448; organism=Citrus clementina; type=EST; length=745bp
GGCCGGGGACACCCCCAAAACACAAGCCCAAAAAAAAAAAAAAAAACTAT
GGCGGTACTCACCAAAAACACTGCCACGCGCCTCCCTCTCCTCCTCTCGC
AACGCGCCGCCTGTCTCCACACGACCGTCCCCTCTCTCTCCTCGGCCTCC
GGCTCCTCCTCCTCCTCCTCGCAGCCCACCTCCTACGCTCGCCCTCCACC
GCCCTCGACCACAAGTCCAGGCGGTATCTCAAAGACGGCGGAATTCGTGA
TCTCTAAATTGGATGATGTCGTCAACTATATTCGTCGCGGCTCCATCTGG
CCCATGTCCTTCGGGCTGGCCTGCTGCGCCGTCGAGATGATGCACACCGG
TGCTGCTCGTTACGATTTAGATCGATTCGGTATCATTTTCAGGCCCAGCC
CTCGCCAATCCGATGTCATGGTCGTAGCTGGCACACTCACAAACAAGATG
GCCCCTGCCCTTCGCAAGGTTTATGATCAAATGCCAGATCCTAGGTGGGT
CATTTCTACGGGAAGCTGTGCAAATGGTGGTGGATATTATCATTACTCTT
ACTCTGTTGTTCGGGGTTGCGATAGGATTGTCCCCGTGGACATCTATGTT
CCGGGCTGCCCTCCTACTGCTGAGGCCCTACTCTATGGAATTCTCCAACT
GCAGAAAAAGATGAACAGGCGCAGAGATTTGTATTATTGGTGGACCAAGT
GAGAAAAGCTCAAGTGGCTCCTTGGCAGTTACACTCGACTATTAT
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