FC932448

Overview
NameFC932448
Unique NameFC932448
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length745
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC932448_ssr153 microsatellite FC932448_ssr153:153..170. BLAST: Citrus ESTs to Populus V2 proteins
Ccv1_Contig11434 contig Ccv1_Contig11434:118..866. BLAST: Citrus Unigene V1 Contigs to Populus V2 proteins
Homology
BLAST of FC932448 vs. ExPASy Swiss-Prot
Match: NUOB_NITEC (NADH-quinone oxidoreductase subunit B OS=Nitrosomonas eutropha (strain C91) GN=nuoB PE=3 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 3.892e-57
Identity = 105/142 (73.94%), Postives = 117/142 (82.39%), Query Frame = 1
Query:  244 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISTGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNR 669
            FV + LD ++N+ R GS+WPM+FGLACCAVEMM TGA+RYDLDRFGI+FRPSPRQSDVM+VAGTL NKMAPALRKVYDQM +PRWVIS GSCAN              CDRIVPVDIYVPGCPPTAEALLYGI+QLQ K+ R
Sbjct:   11 FVTTNLDSLINWGRTGSMWPMTFGLACCAVEMMQTGASRYDLDRFGIVFRPSPRQSDVMIVAGTLCNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGIIQLQNKIWR 152          
BLAST of FC932448 vs. ExPASy Swiss-Prot
Match: NUOB_BURXL (NADH-quinone oxidoreductase subunit B OS=Burkholderia xenovorans (strain LB400) GN=nuoB PE=3 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 3.892e-57
Identity = 101/142 (71.13%), Postives = 116/142 (81.69%), Query Frame = 1
Query:  244 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISTGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNR 669
            FV +  D ++N+ R GS+WPM+FGLACCAVEMMH GAARYDLDRFG++FRPSPRQSDVM+VAGTL NKMAPALRKVYDQM +PRWVIS GSCAN              CDRIVPVD+YVPGCPPTAEAL+YG++QLQ K+ R
Sbjct:   11 FVTTTADKLINWTRTGSLWPMTFGLACCAVEMMHAGAARYDLDRFGVVFRPSPRQSDVMIVAGTLCNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALVYGVIQLQAKIRR 152          
BLAST of FC932448 vs. ExPASy Swiss-Prot
Match: NUOB_BURPP (NADH-quinone oxidoreductase subunit B OS=Burkholderia phytofirmans (strain DSM 17436 / PsJN) GN=nuoB PE=3 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 3.892e-57
Identity = 101/142 (71.13%), Postives = 116/142 (81.69%), Query Frame = 1
Query:  244 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISTGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNR 669
            FV +  D ++N+ R GS+WPM+FGLACCAVEMMH GAARYDLDRFG++FRPSPRQSDVM+VAGTL NKMAPALRKVYDQM +PRWVIS GSCAN              CDRIVPVD+YVPGCPPTAEAL+YG++QLQ K+ R
Sbjct:   11 FVTTTADKLINWTRTGSLWPMTFGLACCAVEMMHAGAARYDLDRFGVVFRPSPRQSDVMIVAGTLCNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALVYGVIQLQAKIRR 152          
BLAST of FC932448 vs. ExPASy Swiss-Prot
Match: NUOB_BURP8 (NADH-quinone oxidoreductase subunit B OS=Burkholderia phymatum (strain DSM 17167 / STM815) GN=nuoB PE=3 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 3.892e-57
Identity = 101/142 (71.13%), Postives = 116/142 (81.69%), Query Frame = 1
Query:  244 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISTGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNR 669
            FV +  D ++N+ R GS+WPM+FGLACCAVEMMH GAARYDLDRFG++FRPSPRQSDVM+VAGTL NKMAPALRKVYDQM +PRWVIS GSCAN              CDRIVPVD+YVPGCPPTAEAL+YG++QLQ K+ R
Sbjct:   11 FVTTTADKLINWTRTGSLWPMTFGLACCAVEMMHAGAARYDLDRFGVVFRPSPRQSDVMIVAGTLCNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALVYGVIQLQAKIRR 152          
BLAST of FC932448 vs. ExPASy Swiss-Prot
Match: NUOB_XANOR (NADH-quinone oxidoreductase subunit B OS=Xanthomonas oryzae pv. oryzae GN=nuoB PE=3 SV=2)

HSP 1 Score: 221.09 bits (562), Expect = 5.083e-57
Identity = 102/146 (69.86%), Postives = 120/146 (82.19%), Query Frame = 1
Query:  244 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISTGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNRRRDL 681
            +V + +D ++N+ R GS+WPM+FGLACCAVEMMH GA+R DLDR+G++FRPSPRQSDVM+VAGTL NKMAPALRKVYDQMPDP+WVIS GSCAN              CDRIVPVDIYVPGCPPTAEAL+YGILQLQKK+ R + +
Sbjct:   37 YVTTSVDALLNWARTGSMWPMTFGLACCAVEMMHAGASRLDLDRYGVVFRPSPRQSDVMIVAGTLVNKMAPALRKVYDQMPDPKWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALVYGILQLQKKIWRTQTI 182          
BLAST of FC932448 vs. ExPASy Swiss-Prot
Match: NUOB_XANOP (NADH-quinone oxidoreductase subunit B OS=Xanthomonas oryzae pv. oryzae (strain PXO99A) GN=nuoB PE=3 SV=1)

HSP 1 Score: 221.09 bits (562), Expect = 5.083e-57
Identity = 102/146 (69.86%), Postives = 120/146 (82.19%), Query Frame = 1
Query:  244 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISTGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNRRRDL 681
            +V + +D ++N+ R GS+WPM+FGLACCAVEMMH GA+R DLDR+G++FRPSPRQSDVM+VAGTL NKMAPALRKVYDQMPDP+WVIS GSCAN              CDRIVPVDIYVPGCPPTAEAL+YGILQLQKK+ R + +
Sbjct:   35 YVTTSVDALLNWARTGSMWPMTFGLACCAVEMMHAGASRLDLDRYGVVFRPSPRQSDVMIVAGTLVNKMAPALRKVYDQMPDPKWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALVYGILQLQKKIWRTQTI 180          
BLAST of FC932448 vs. ExPASy Swiss-Prot
Match: NUOB_XANOM (NADH-quinone oxidoreductase subunit B OS=Xanthomonas oryzae pv. oryzae (strain MAFF 311018) GN=nuoB PE=3 SV=2)

HSP 1 Score: 221.09 bits (562), Expect = 5.083e-57
Identity = 102/146 (69.86%), Postives = 120/146 (82.19%), Query Frame = 1
Query:  244 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISTGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNRRRDL 681
            +V + +D ++N+ R GS+WPM+FGLACCAVEMMH GA+R DLDR+G++FRPSPRQSDVM+VAGTL NKMAPALRKVYDQMPDP+WVIS GSCAN              CDRIVPVDIYVPGCPPTAEAL+YGILQLQKK+ R + +
Sbjct:   37 YVTTSVDALLNWARTGSMWPMTFGLACCAVEMMHAGASRLDLDRYGVVFRPSPRQSDVMIVAGTLVNKMAPALRKVYDQMPDPKWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALVYGILQLQKKIWRTQTI 182          
BLAST of FC932448 vs. ExPASy Swiss-Prot
Match: NUOB_XANC5 (NADH-quinone oxidoreductase subunit B OS=Xanthomonas campestris pv. vesicatoria (strain 85-10) GN=nuoB PE=3 SV=1)

HSP 1 Score: 221.09 bits (562), Expect = 5.083e-57
Identity = 102/146 (69.86%), Postives = 120/146 (82.19%), Query Frame = 1
Query:  244 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISTGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNRRRDL 681
            +V + +D ++N+ R GS+WPM+FGLACCAVEMMH GA+R DLDR+G++FRPSPRQSDVM+VAGTL NKMAPALRKVYDQMPDP+WVIS GSCAN              CDRIVPVDIYVPGCPPTAEAL+YGILQLQKK+ R + +
Sbjct:   37 YVTTSVDALLNWARTGSMWPMTFGLACCAVEMMHAGASRLDLDRYGVVFRPSPRQSDVMIVAGTLVNKMAPALRKVYDQMPDPKWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALVYGILQLQKKIWRTQTI 182          
BLAST of FC932448 vs. ExPASy Swiss-Prot
Match: NUOB_XANAC (NADH-quinone oxidoreductase subunit B OS=Xanthomonas axonopodis pv. citri GN=nuoB PE=3 SV=2)

HSP 1 Score: 221.09 bits (562), Expect = 5.083e-57
Identity = 102/146 (69.86%), Postives = 120/146 (82.19%), Query Frame = 1
Query:  244 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISTGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNRRRDL 681
            +V + +D ++N+ R GS+WPM+FGLACCAVEMMH GA+R DLDR+G++FRPSPRQSDVM+VAGTL NKMAPALRKVYDQMPDP+WVIS GSCAN              CDRIVPVDIYVPGCPPTAEAL+YGILQLQKK+ R + +
Sbjct:   37 YVTTSVDALLNWARTGSMWPMTFGLACCAVEMMHAGASRLDLDRYGVVFRPSPRQSDVMIVAGTLVNKMAPALRKVYDQMPDPKWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALVYGILQLQKKIWRTQTI 182          
BLAST of FC932448 vs. ExPASy Swiss-Prot
Match: NUOB_RALSO (NADH-quinone oxidoreductase subunit B OS=Ralstonia solanacearum GN=nuoB PE=3 SV=1)

HSP 1 Score: 221.09 bits (562), Expect = 5.083e-57
Identity = 101/142 (71.13%), Postives = 116/142 (81.69%), Query Frame = 1
Query:  244 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISTGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNR 669
            FV +  D ++N+ R GS+WPM+FGLACCAVEMMH GA+RYDLDRFG++FRPSPRQSDVM+VAGTL NKMAPALRKVYDQM +PRWVIS GSCAN              CDRIVPVD+YVPGCPPTAEAL+YGI+QLQ K+ R
Sbjct:   11 FVTTTADKLINWTRTGSLWPMTFGLACCAVEMMHAGASRYDLDRFGVVFRPSPRQSDVMIVAGTLCNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALIYGIIQLQAKIRR 152          
The following BLAST results are available for this feature:
BLAST of FC932448 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NUOB_NITEC3.892e-5773.94NADH-quinone oxidoreductase subunit B OS=Nitrosomo... [more]
NUOB_BURXL3.892e-5771.13NADH-quinone oxidoreductase subunit B OS=Burkholde... [more]
NUOB_BURPP3.892e-5771.13NADH-quinone oxidoreductase subunit B OS=Burkholde... [more]
NUOB_BURP83.892e-5771.13NADH-quinone oxidoreductase subunit B OS=Burkholde... [more]
NUOB_XANOR5.083e-5769.86NADH-quinone oxidoreductase subunit B OS=Xanthomon... [more]
NUOB_XANOP5.083e-5769.86NADH-quinone oxidoreductase subunit B OS=Xanthomon... [more]
NUOB_XANOM5.083e-5769.86NADH-quinone oxidoreductase subunit B OS=Xanthomon... [more]
NUOB_XANC55.083e-5769.86NADH-quinone oxidoreductase subunit B OS=Xanthomon... [more]
NUOB_XANAC5.083e-5769.86NADH-quinone oxidoreductase subunit B OS=Xanthomon... [more]
NUOB_RALSO5.083e-5771.13NADH-quinone oxidoreductase subunit B OS=Ralstonia... [more]

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Properties
Property NameValue
Genbank descriptionC34208F12EF PostHarveN Citrus clementina cDNA clone C34208F12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932448 ID=FC932448; Name=FC932448; organism=Citrus clementina; type=EST; length=745bp
GGCCGGGGACACCCCCAAAACACAAGCCCAAAAAAAAAAAAAAAAACTAT
GGCGGTACTCACCAAAAACACTGCCACGCGCCTCCCTCTCCTCCTCTCGC
AACGCGCCGCCTGTCTCCACACGACCGTCCCCTCTCTCTCCTCGGCCTCC
GGCTCCTCCTCCTCCTCCTCGCAGCCCACCTCCTACGCTCGCCCTCCACC
GCCCTCGACCACAAGTCCAGGCGGTATCTCAAAGACGGCGGAATTCGTGA
TCTCTAAATTGGATGATGTCGTCAACTATATTCGTCGCGGCTCCATCTGG
CCCATGTCCTTCGGGCTGGCCTGCTGCGCCGTCGAGATGATGCACACCGG
TGCTGCTCGTTACGATTTAGATCGATTCGGTATCATTTTCAGGCCCAGCC
CTCGCCAATCCGATGTCATGGTCGTAGCTGGCACACTCACAAACAAGATG
GCCCCTGCCCTTCGCAAGGTTTATGATCAAATGCCAGATCCTAGGTGGGT
CATTTCTACGGGAAGCTGTGCAAATGGTGGTGGATATTATCATTACTCTT
ACTCTGTTGTTCGGGGTTGCGATAGGATTGTCCCCGTGGACATCTATGTT
CCGGGCTGCCCTCCTACTGCTGAGGCCCTACTCTATGGAATTCTCCAACT
GCAGAAAAAGATGAACAGGCGCAGAGATTTGTATTATTGGTGGACCAAGT
GAGAAAAGCTCAAGTGGCTCCTTGGCAGTTACACTCGACTATTAT
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