FC932448

Overview
NameFC932448
Unique NameFC932448
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length745
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC932448_ssr153 microsatellite FC932448_ssr153:153..170. BLAST: Citrus ESTs to Populus V2 proteins
Ccv1_Contig11434 contig Ccv1_Contig11434:118..866. BLAST: Citrus Unigene V1 Contigs to Populus V2 proteins
Homology
[Close]
BLAST of FC932448 vs. ExPASy Swiss-Prot
Match: NUOB_RALPJ (NADH-quinone oxidoreductase subunit B OS=Ralstonia pickettii (strain 12J) GN=nuoB PE=3 SV=1)

HSP 1 Score: 221.09 bits (562), Expect = 5.083e-57
Identity = 101/142 (71.13%), Postives = 116/142 (81.69%), Query Frame = 1 
Query:  244 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISTGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNR 669
            FV +  D ++N+ R GS+WPM+FGLACCAVEMMH GA+RYDLDRFG++FRPSPRQSDVM+VAGTL NKMAPALRKVYDQM +PRWVIS GSCAN              CDRIVPVD+YVPGCPPTAEAL+YGI+QLQ K+ R
Sbjct:   11 FVTTTADKLINWTRTGSLWPMTFGLACCAVEMMHAGASRYDLDRFGVVFRPSPRQSDVMIVAGTLCNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALIYGIIQLQAKIRR 152
[Close]
BLAST of FC932448 vs. ExPASy Swiss-Prot
Match: NUOB_LARHH (NADH-quinone oxidoreductase subunit B OS=Laribacter hongkongensis (strain HLHK9) GN=nuoB PE=3 SV=1)

HSP 1 Score: 221.09 bits (562), Expect = 5.083e-57
Identity = 101/142 (71.13%), Postives = 116/142 (81.69%), Query Frame = 1 
Query:  244 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISTGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNR 669
            F+ +  D V+N+ R GS+WPM+FGLACCAVEMMH GA+RYDLDRFGI+FRPSPRQSD+M+VAGTL NKMAPALRKVYDQM +PRWV+S GSCAN              CDRIVPVD+YVPGCPPTAEALLYGI+QLQ K+ R
Sbjct:   11 FITTSADKVLNWTRTGSLWPMTFGLACCAVEMMHAGASRYDLDRFGIVFRPSPRQSDLMIVAGTLCNKMAPALRKVYDQMAEPRWVLSMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALLYGIIQLQNKIKR 152
[Close]
BLAST of FC932448 vs. ExPASy Swiss-Prot
Match: NUOB_HERAR (NADH-quinone oxidoreductase subunit B OS=Herminiimonas arsenicoxydans GN=nuoB PE=3 SV=1)

HSP 1 Score: 221.09 bits (562), Expect = 5.083e-57
Identity = 101/142 (71.13%), Postives = 116/142 (81.69%), Query Frame = 1 
Query:  244 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISTGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNR 669
            FV +  D ++N+ R GS+WPM+FGLACCAVEMMH GA+RYD+DRFG++FRPSPRQSDVM+VAGTL NKMAPALRKVYDQM +PRWVIS GSCAN              CDRIVPVD+YVPGCPPTAEALLYGI+QLQ K+ R
Sbjct:   11 FVTTTADKLINWTRTGSMWPMTFGLACCAVEMMHAGASRYDMDRFGVVFRPSPRQSDVMIVAGTLCNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALLYGIMQLQNKIRR 152
[Close]
BLAST of FC932448 vs. ExPASy Swiss-Prot
Match: NUOB1_AZOSB (NADH-quinone oxidoreductase subunit B 1 OS=Azoarcus sp. (strain BH72) GN=nuoB1 PE=3 SV=1)

HSP 1 Score: 221.09 bits (562), Expect = 5.083e-57
Identity = 101/142 (71.13%), Postives = 116/142 (81.69%), Query Frame = 1 
Query:  244 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISTGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNR 669
            FV + LD V+N+ R GS+WPM+FGLACCAVEM+H G +RYDLDRFG++FRPSPRQSD+M+VAGTL NKMAPALRKVYDQM +PRWVIS GSCAN              CDRIVPVD+YVPGCPPTAEALLYGI+QLQ K+ R
Sbjct:   11 FVTTSLDAVINWTRTGSLWPMTFGLACCAVEMIHAGCSRYDLDRFGVVFRPSPRQSDLMIVAGTLCNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALLYGIIQLQNKIKR 152
[Close]
BLAST of FC932448 vs. ExPASy Swiss-Prot
Match: NUOB_POLNA (NADH-quinone oxidoreductase subunit B OS=Polaromonas naphthalenivorans (strain CJ2) GN=nuoB PE=3 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 8.669e-57
Identity = 101/142 (71.13%), Postives = 116/142 (81.69%), Query Frame = 1 
Query:  244 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISTGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNR 669
            FV +  D VVN+ + GS+WPM+FGLACCAVEMMH GAARYD+DRFG++FRPSPRQSD+M+VAGTL NKM PALRKVYDQM +PRWVIS GSCAN              CDRIVPVD+YVPGCPPTAEALLYGI+QLQ+K+ R
Sbjct:   11 FVTTSYDSVVNWAKTGSLWPMTFGLACCAVEMMHAGAARYDIDRFGMLFRPSPRQSDLMIVAGTLCNKMGPALRKVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALLYGIIQLQQKIRR 152
[Close]
BLAST of FC932448 vs. ExPASy Swiss-Prot
Match: NUOB_BURVG (NADH-quinone oxidoreductase subunit B OS=Burkholderia vietnamiensis (strain G4 / LMG 22486) GN=nuoB PE=3 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 8.669e-57
Identity = 100/142 (70.42%), Postives = 116/142 (81.69%), Query Frame = 1 
Query:  244 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISTGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNR 669
            FV +  D ++N+ R GS+WPM+FGLACCAVEMMH GAARYDLDRFG++FRPSPRQSDVM+VAGTL NKMAPALR+VYDQM +PRWVIS GSCAN              CDRIVPVD+YVPGCPPTAEAL+YG++QLQ K+ R
Sbjct:   11 FVTTTADKLINWTRTGSLWPMTFGLACCAVEMMHAGAARYDLDRFGVVFRPSPRQSDVMIVAGTLCNKMAPALRRVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALVYGVIQLQAKIRR 152
[Close]
BLAST of FC932448 vs. ExPASy Swiss-Prot
Match: NUOB_BURTA (NADH-quinone oxidoreductase subunit B OS=Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) GN=nuoB PE=3 SV=2)

HSP 1 Score: 220.32 bits (560), Expect = 8.669e-57
Identity = 100/142 (70.42%), Postives = 116/142 (81.69%), Query Frame = 1 
Query:  244 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISTGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNR 669
            FV +  D ++N+ R GS+WPM+FGLACCAVEMMH GAARYDLDRFG++FRPSPRQSDVM+VAGTL NKMAPALR+VYDQM +PRWVIS GSCAN              CDRIVPVD+YVPGCPPTAEAL+YG++QLQ K+ R
Sbjct:   11 FVTTTADKLINWTRTGSLWPMTFGLACCAVEMMHAGAARYDLDRFGVVFRPSPRQSDVMIVAGTLCNKMAPALRRVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALVYGVIQLQAKIRR 152
[Close]
BLAST of FC932448 vs. ExPASy Swiss-Prot
Match: NUOB_BURS3 (NADH-quinone oxidoreductase subunit B OS=Burkholderia sp. (strain 383) GN=nuoB PE=3 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 8.669e-57
Identity = 100/142 (70.42%), Postives = 116/142 (81.69%), Query Frame = 1 
Query:  244 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISTGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNR 669
            FV +  D ++N+ R GS+WPM+FGLACCAVEMMH GAARYDLDRFG++FRPSPRQSDVM+VAGTL NKMAPALR+VYDQM +PRWVIS GSCAN              CDRIVPVD+YVPGCPPTAEAL+YG++QLQ K+ R
Sbjct:   11 FVTTTADKLINWTRTGSLWPMTFGLACCAVEMMHAGAARYDLDRFGVVFRPSPRQSDVMIVAGTLCNKMAPALRRVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALVYGVIQLQAKIRR 152
[Close]
BLAST of FC932448 vs. ExPASy Swiss-Prot
Match: NUOB_BURM1 (NADH-quinone oxidoreductase subunit B OS=Burkholderia multivorans (strain ATCC 17616 / 249) GN=nuoB PE=3 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 8.669e-57
Identity = 100/142 (70.42%), Postives = 116/142 (81.69%), Query Frame = 1 
Query:  244 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISTGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNR 669
            FV +  D ++N+ R GS+WPM+FGLACCAVEMMH GAARYDLDRFG++FRPSPRQSDVM+VAGTL NKMAPALR+VYDQM +PRWVIS GSCAN              CDRIVPVD+YVPGCPPTAEAL+YG++QLQ K+ R
Sbjct:   11 FVTTTADKLINWTRTGSLWPMTFGLACCAVEMMHAGAARYDLDRFGVVFRPSPRQSDVMIVAGTLCNKMAPALRRVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALVYGVIQLQAKIRR 152
[Close]
BLAST of FC932448 vs. ExPASy Swiss-Prot
Match: NUOB_BURCM (NADH-quinone oxidoreductase subunit B OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) GN=nuoB PE=3 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 8.669e-57
Identity = 100/142 (70.42%), Postives = 116/142 (81.69%), Query Frame = 1 
Query:  244 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISTGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNR 669
            FV +  D ++N+ R GS+WPM+FGLACCAVEMMH GAARYDLDRFG++FRPSPRQSDVM+VAGTL NKMAPALR+VYDQM +PRWVIS GSCAN              CDRIVPVD+YVPGCPPTAEAL+YG++QLQ K+ R
Sbjct:   11 FVTTTADKLINWTRTGSLWPMTFGLACCAVEMMHAGAARYDLDRFGVVFRPSPRQSDVMIVAGTLCNKMAPALRRVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALVYGVIQLQAKIRR 152
The following BLAST results are available for this feature:
BLAST of FC932448 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NUOB_RALPJ5.083e-5771.13NADH-quinone oxidoreductase subunit B OS=Ralstonia... [more]
NUOB_LARHH5.083e-5771.13NADH-quinone oxidoreductase subunit B OS=Laribacte... [more]
NUOB_HERAR5.083e-5771.13NADH-quinone oxidoreductase subunit B OS=Herminiim... [more]
NUOB1_AZOSB5.083e-5771.13NADH-quinone oxidoreductase subunit B 1 OS=Azoarcu... [more]
NUOB_POLNA8.669e-5771.13NADH-quinone oxidoreductase subunit B OS=Polaromon... [more]
NUOB_BURVG8.669e-5770.42NADH-quinone oxidoreductase subunit B OS=Burkholde... [more]
NUOB_BURTA8.669e-5770.42NADH-quinone oxidoreductase subunit B OS=Burkholde... [more]
NUOB_BURS38.669e-5770.42NADH-quinone oxidoreductase subunit B OS=Burkholde... [more]
NUOB_BURM18.669e-5770.42NADH-quinone oxidoreductase subunit B OS=Burkholde... [more]
NUOB_BURCM8.669e-5770.42NADH-quinone oxidoreductase subunit B OS=Burkholde... [more]

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Properties
Property NameValue
Genbank descriptionC34208F12EF PostHarveN Citrus clementina cDNA clone C34208F12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932448 ID=FC932448; Name=FC932448; organism=Citrus clementina; type=EST; length=745bp
GGCCGGGGACACCCCCAAAACACAAGCCCAAAAAAAAAAAAAAAAACTAT
GGCGGTACTCACCAAAAACACTGCCACGCGCCTCCCTCTCCTCCTCTCGC
AACGCGCCGCCTGTCTCCACACGACCGTCCCCTCTCTCTCCTCGGCCTCC
GGCTCCTCCTCCTCCTCCTCGCAGCCCACCTCCTACGCTCGCCCTCCACC
GCCCTCGACCACAAGTCCAGGCGGTATCTCAAAGACGGCGGAATTCGTGA
TCTCTAAATTGGATGATGTCGTCAACTATATTCGTCGCGGCTCCATCTGG
CCCATGTCCTTCGGGCTGGCCTGCTGCGCCGTCGAGATGATGCACACCGG
TGCTGCTCGTTACGATTTAGATCGATTCGGTATCATTTTCAGGCCCAGCC
CTCGCCAATCCGATGTCATGGTCGTAGCTGGCACACTCACAAACAAGATG
GCCCCTGCCCTTCGCAAGGTTTATGATCAAATGCCAGATCCTAGGTGGGT
CATTTCTACGGGAAGCTGTGCAAATGGTGGTGGATATTATCATTACTCTT
ACTCTGTTGTTCGGGGTTGCGATAGGATTGTCCCCGTGGACATCTATGTT
CCGGGCTGCCCTCCTACTGCTGAGGCCCTACTCTATGGAATTCTCCAACT
GCAGAAAAAGATGAACAGGCGCAGAGATTTGTATTATTGGTGGACCAAGT
GAGAAAAGCTCAAGTGGCTCCTTGGCAGTTACACTCGACTATTAT
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