FC932448

Overview
NameFC932448
Unique NameFC932448
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length745
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC932448_ssr153 microsatellite FC932448_ssr153:153..170. BLAST: Citrus ESTs to Populus V2 proteins
Ccv1_Contig11434 contig Ccv1_Contig11434:118..866. BLAST: Citrus Unigene V1 Contigs to Populus V2 proteins
Homology
[Close]
BLAST of FC932448 vs. ExPASy Swiss-Prot
Match: NUOB_BURCJ (NADH-quinone oxidoreductase subunit B OS=Burkholderia cepacia (strain J2315 / LMG 16656) GN=nuoB PE=3 SV=2)

HSP 1 Score: 220.32 bits (560), Expect = 8.669e-57
Identity = 100/142 (70.42%), Postives = 116/142 (81.69%), Query Frame = 1 
Query:  244 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISTGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNR 669
            FV +  D ++N+ R GS+WPM+FGLACCAVEMMH GAARYDLDRFG++FRPSPRQSDVM+VAGTL NKMAPALR+VYDQM +PRWVIS GSCAN              CDRIVPVD+YVPGCPPTAEAL+YG++QLQ K+ R
Sbjct:   11 FVTTTADKLINWTRTGSLWPMTFGLACCAVEMMHAGAARYDLDRFGVVFRPSPRQSDVMIVAGTLCNKMAPALRRVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALVYGVIQLQAKIRR 152
[Close]
BLAST of FC932448 vs. ExPASy Swiss-Prot
Match: NUOB_BURCH (NADH-quinone oxidoreductase subunit B OS=Burkholderia cenocepacia (strain HI2424) GN=nuoB PE=3 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 8.669e-57
Identity = 100/142 (70.42%), Postives = 116/142 (81.69%), Query Frame = 1 
Query:  244 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISTGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNR 669
            FV +  D ++N+ R GS+WPM+FGLACCAVEMMH GAARYDLDRFG++FRPSPRQSDVM+VAGTL NKMAPALR+VYDQM +PRWVIS GSCAN              CDRIVPVD+YVPGCPPTAEAL+YG++QLQ K+ R
Sbjct:   11 FVTTTADKLINWTRTGSLWPMTFGLACCAVEMMHAGAARYDLDRFGVVFRPSPRQSDVMIVAGTLCNKMAPALRRVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALVYGVIQLQAKIRR 152
[Close]
BLAST of FC932448 vs. ExPASy Swiss-Prot
Match: NUOB_BURCC (NADH-quinone oxidoreductase subunit B OS=Burkholderia cenocepacia (strain MC0-3) GN=nuoB PE=3 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 8.669e-57
Identity = 100/142 (70.42%), Postives = 116/142 (81.69%), Query Frame = 1 
Query:  244 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISTGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNR 669
            FV +  D ++N+ R GS+WPM+FGLACCAVEMMH GAARYDLDRFG++FRPSPRQSDVM+VAGTL NKMAPALR+VYDQM +PRWVIS GSCAN              CDRIVPVD+YVPGCPPTAEAL+YG++QLQ K+ R
Sbjct:   11 FVTTTADKLINWTRTGSLWPMTFGLACCAVEMMHAGAARYDLDRFGVVFRPSPRQSDVMIVAGTLCNKMAPALRRVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALVYGVIQLQAKIRR 152
[Close]
BLAST of FC932448 vs. ExPASy Swiss-Prot
Match: NUOB_BURCA (NADH-quinone oxidoreductase subunit B OS=Burkholderia cenocepacia (strain AU 1054) GN=nuoB PE=3 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 8.669e-57
Identity = 100/142 (70.42%), Postives = 116/142 (81.69%), Query Frame = 1 
Query:  244 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISTGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNR 669
            FV +  D ++N+ R GS+WPM+FGLACCAVEMMH GAARYDLDRFG++FRPSPRQSDVM+VAGTL NKMAPALR+VYDQM +PRWVIS GSCAN              CDRIVPVD+YVPGCPPTAEAL+YG++QLQ K+ R
Sbjct:   11 FVTTTADKLINWTRTGSLWPMTFGLACCAVEMMHAGAARYDLDRFGVVFRPSPRQSDVMIVAGTLCNKMAPALRRVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALVYGVIQLQAKIRR 152
[Close]
BLAST of FC932448 vs. ExPASy Swiss-Prot
Match: NUOB_BURA4 (NADH-quinone oxidoreductase subunit B OS=Burkholderia ambifaria (strain MC40-6) GN=nuoB PE=3 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 8.669e-57
Identity = 100/142 (70.42%), Postives = 116/142 (81.69%), Query Frame = 1 
Query:  244 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISTGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNR 669
            FV +  D ++N+ R GS+WPM+FGLACCAVEMMH GAARYDLDRFG++FRPSPRQSDVM+VAGTL NKMAPALR+VYDQM +PRWVIS GSCAN              CDRIVPVD+YVPGCPPTAEAL+YG++QLQ K+ R
Sbjct:   11 FVTTTADKLINWTRTGSLWPMTFGLACCAVEMMHAGAARYDLDRFGVVFRPSPRQSDVMIVAGTLCNKMAPALRRVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALVYGVIQLQAKIRR 152
[Close]
BLAST of FC932448 vs. ExPASy Swiss-Prot
Match: NUOB2_NITOC (NADH-quinone oxidoreductase subunit B 2 OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) GN=nuoB2 PE=3 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 8.669e-57
Identity = 102/141 (72.34%), Postives = 115/141 (81.56%), Query Frame = 1 
Query:  247 VISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISTGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNR 669
            V +  D ++N+ R GS+WPM+FGLACCAVEMMH GA+RYD+DRFG+IFRPSPRQSDVM+VAGTL NKMAPALRKVYDQM +PRWVIS GSCAN              CDRIVPVDIYVPGCPPTAEALLYGI+QLQ K+ R
Sbjct:   12 VTTTADKLINWARTGSLWPMTFGLACCAVEMMHAGASRYDMDRFGVIFRPSPRQSDVMIVAGTLVNKMAPALRKVYDQMSEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGIIQLQNKIKR 152
[Close]
BLAST of FC932448 vs. ExPASy Swiss-Prot
Match: NUOB1_BURPS (NADH-quinone oxidoreductase subunit B 1 OS=Burkholderia pseudomallei GN=nuoB1 PE=3 SV=2)

HSP 1 Score: 220.32 bits (560), Expect = 8.669e-57
Identity = 100/142 (70.42%), Postives = 116/142 (81.69%), Query Frame = 1 
Query:  244 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISTGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNR 669
            FV +  D ++N+ R GS+WPM+FGLACCAVEMMH GAARYDLDRFG++FRPSPRQSDVM+VAGTL NKMAPALR+VYDQM +PRWVIS GSCAN              CDRIVPVD+YVPGCPPTAEAL+YG++QLQ K+ R
Sbjct:   11 FVTTTADKLINWTRTGSLWPMTFGLACCAVEMMHAGAARYDLDRFGVVFRPSPRQSDVMIVAGTLCNKMAPALRRVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALVYGVIQLQAKIRR 152
[Close]
BLAST of FC932448 vs. ExPASy Swiss-Prot
Match: NUOB1_BURP6 (NADH-quinone oxidoreductase subunit B 1 OS=Burkholderia pseudomallei (strain 668) GN=nuoB1 PE=3 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 8.669e-57
Identity = 100/142 (70.42%), Postives = 116/142 (81.69%), Query Frame = 1 
Query:  244 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISTGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNR 669
            FV +  D ++N+ R GS+WPM+FGLACCAVEMMH GAARYDLDRFG++FRPSPRQSDVM+VAGTL NKMAPALR+VYDQM +PRWVIS GSCAN              CDRIVPVD+YVPGCPPTAEAL+YG++QLQ K+ R
Sbjct:   11 FVTTTADKLINWTRTGSLWPMTFGLACCAVEMMHAGAARYDLDRFGVVFRPSPRQSDVMIVAGTLCNKMAPALRRVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALVYGVIQLQAKIRR 152
[Close]
BLAST of FC932448 vs. ExPASy Swiss-Prot
Match: NUOB1_BURP1 (NADH-quinone oxidoreductase subunit B 1 OS=Burkholderia pseudomallei (strain 1710b) GN=nuoB1 PE=3 SV=2)

HSP 1 Score: 220.32 bits (560), Expect = 8.669e-57
Identity = 100/142 (70.42%), Postives = 116/142 (81.69%), Query Frame = 1 
Query:  244 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISTGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNR 669
            FV +  D ++N+ R GS+WPM+FGLACCAVEMMH GAARYDLDRFG++FRPSPRQSDVM+VAGTL NKMAPALR+VYDQM +PRWVIS GSCAN              CDRIVPVD+YVPGCPPTAEAL+YG++QLQ K+ R
Sbjct:   11 FVTTTADKLINWTRTGSLWPMTFGLACCAVEMMHAGAARYDLDRFGVVFRPSPRQSDVMIVAGTLCNKMAPALRRVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALVYGVIQLQAKIRR 152
[Close]
BLAST of FC932448 vs. ExPASy Swiss-Prot
Match: NUOB1_BURP0 (NADH-quinone oxidoreductase subunit B 1 OS=Burkholderia pseudomallei (strain 1106a) GN=nuoB1 PE=3 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 8.669e-57
Identity = 100/142 (70.42%), Postives = 116/142 (81.69%), Query Frame = 1 
Query:  244 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISTGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNR 669
            FV +  D ++N+ R GS+WPM+FGLACCAVEMMH GAARYDLDRFG++FRPSPRQSDVM+VAGTL NKMAPALR+VYDQM +PRWVIS GSCAN              CDRIVPVD+YVPGCPPTAEAL+YG++QLQ K+ R
Sbjct:   11 FVTTTADKLINWTRTGSLWPMTFGLACCAVEMMHAGAARYDLDRFGVVFRPSPRQSDVMIVAGTLCNKMAPALRRVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALVYGVIQLQAKIRR 152
The following BLAST results are available for this feature:
BLAST of FC932448 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NUOB_BURCJ8.669e-5770.42NADH-quinone oxidoreductase subunit B OS=Burkholde... [more]
NUOB_BURCH8.669e-5770.42NADH-quinone oxidoreductase subunit B OS=Burkholde... [more]
NUOB_BURCC8.669e-5770.42NADH-quinone oxidoreductase subunit B OS=Burkholde... [more]
NUOB_BURCA8.669e-5770.42NADH-quinone oxidoreductase subunit B OS=Burkholde... [more]
NUOB_BURA48.669e-5770.42NADH-quinone oxidoreductase subunit B OS=Burkholde... [more]
NUOB2_NITOC8.669e-5772.34NADH-quinone oxidoreductase subunit B 2 OS=Nitroso... [more]
NUOB1_BURPS8.669e-5770.42NADH-quinone oxidoreductase subunit B 1 OS=Burkhol... [more]
NUOB1_BURP68.669e-5770.42NADH-quinone oxidoreductase subunit B 1 OS=Burkhol... [more]
NUOB1_BURP18.669e-5770.42NADH-quinone oxidoreductase subunit B 1 OS=Burkhol... [more]
NUOB1_BURP08.669e-5770.42NADH-quinone oxidoreductase subunit B 1 OS=Burkhol... [more]

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Properties
Property NameValue
Genbank descriptionC34208F12EF PostHarveN Citrus clementina cDNA clone C34208F12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932448 ID=FC932448; Name=FC932448; organism=Citrus clementina; type=EST; length=745bp
GGCCGGGGACACCCCCAAAACACAAGCCCAAAAAAAAAAAAAAAAACTAT
GGCGGTACTCACCAAAAACACTGCCACGCGCCTCCCTCTCCTCCTCTCGC
AACGCGCCGCCTGTCTCCACACGACCGTCCCCTCTCTCTCCTCGGCCTCC
GGCTCCTCCTCCTCCTCCTCGCAGCCCACCTCCTACGCTCGCCCTCCACC
GCCCTCGACCACAAGTCCAGGCGGTATCTCAAAGACGGCGGAATTCGTGA
TCTCTAAATTGGATGATGTCGTCAACTATATTCGTCGCGGCTCCATCTGG
CCCATGTCCTTCGGGCTGGCCTGCTGCGCCGTCGAGATGATGCACACCGG
TGCTGCTCGTTACGATTTAGATCGATTCGGTATCATTTTCAGGCCCAGCC
CTCGCCAATCCGATGTCATGGTCGTAGCTGGCACACTCACAAACAAGATG
GCCCCTGCCCTTCGCAAGGTTTATGATCAAATGCCAGATCCTAGGTGGGT
CATTTCTACGGGAAGCTGTGCAAATGGTGGTGGATATTATCATTACTCTT
ACTCTGTTGTTCGGGGTTGCGATAGGATTGTCCCCGTGGACATCTATGTT
CCGGGCTGCCCTCCTACTGCTGAGGCCCTACTCTATGGAATTCTCCAACT
GCAGAAAAAGATGAACAGGCGCAGAGATTTGTATTATTGGTGGACCAAGT
GAGAAAAGCTCAAGTGGCTCCTTGGCAGTTACACTCGACTATTAT
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