FC932452

Overview
NameFC932452
Unique NameFC932452
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length713
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932452 vs. ExPASy Swiss-Prot
Match: YPT1_NEUCR (GTP-binding protein ypt1 OS=Neurospora crassa GN=ypt-1 PE=3 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 5.363e-37
Identity = 78/149 (52.35%), Postives = 101/149 (67.79%), Query Frame = 1
Query:  262 EYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSA 708
            EYDYLFKL+LIGDSGVGKS LL RF  + +     STIGV+F  R++ +D K VK QIWDTAGQER+R ITS+YYRGA G  +VYDVT   +F NV +WL+E+  +    +  +L+GNK+D+     V     K FA+   + F+ETSA
Sbjct:    4 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTVKLQIWDTAGQERFRTITSSYYRGAHGICVVYDVTDMDSFNNVKQWLQEIDRYATEGVNKLLVGNKSDMTDKKVVEYTVAKEFADSLGIPFLETSA 152          
BLAST of FC932452 vs. ExPASy Swiss-Prot
Match: RAB1D_DICDI (Ras-related protein Rab-1D OS=Dictyostelium discoideum GN=rab1D PE=1 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 5.363e-37
Identity = 76/149 (51.01%), Postives = 103/149 (69.13%), Query Frame = 1
Query:  262 EYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSA 708
            E+D+ FK++LIGDSGVGKS LL RF  + +     STIGV+F  ++L +D K +K QIWDTAGQER+R ITS+YYRGA G +LVYD T   +F NV +W+ E+  +   N+  +L+GNKTDL +   V +   K+FAE   + F+ETSA
Sbjct:    6 EHDFFFKILLIGDSGVGKSCLLLRFADDSWTDTHISTIGVDFKIKTLNLDGKTIKLQIWDTAGQERFRTITSSYYRGAQGIILVYDCTDQDSFTNVKQWMGEIDRYACENVNKLLVGNKTDLVNEKVVDSNQAKSFAESYGIPFIETSA 154          
BLAST of FC932452 vs. ExPASy Swiss-Prot
Match: RAB1_THEAN (Ras-related protein Rab-1 OS=Theileria annulata GN=rab1 PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 9.147e-37
Identity = 74/151 (49.01%), Postives = 105/151 (69.54%), Query Frame = 1
Query:  259 EEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGR-WLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSA 708
            +EYDYLFK+++IGDSG GKS+LL RF  N ++    STIGV+F  ++++IDN  +K QIWDTAGQER+R ITS YYRGA G + VYDVT   +F ++   WL+++ ++   N+  +LIGNK DL     V  ++ K  AEQ ++ ++E SA
Sbjct:    2 KEYDYLFKIIVIGDSGTGKSSLLLRFADNTYSESYMSTIGVDFKIKTVKIDNTTIKLQIWDTAGQERFRTITSTYYRGAHGIICVYDVTNKLSFDHITETWLQDIDKYATSNVCKLLIGNKIDLVDSRVVLADEAKHVAEQNNMNYIEASA 152          
BLAST of FC932452 vs. ExPASy Swiss-Prot
Match: RAB10_DISOM (Ras-related protein Rab-10 OS=Discopyge ommata PE=2 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 9.147e-37
Identity = 71/148 (47.97%), Postives = 103/148 (69.59%), Query Frame = 1
Query:  265 YDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSA 708
            YD LFKL+LIGDSGVGK+ +L RF+ + FN    STIG++F  +++ +  K +K QIWDTAGQER+  IT++YYRGA+G +LVYD+T   +F+N+ +WLR + EH + ++  ML+GNK D+     V    G+  A + ++ F ETSA
Sbjct:    6 YDLLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELHGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNAKSFENISKWLRNIDEHANEDVERMLLGNKCDMEDKRVVLKSKGEQIAREHAIRFFETSA 153          
BLAST of FC932452 vs. ExPASy Swiss-Prot
Match: YPT1_SCHPO (GTP-binding protein ypt1 OS=Schizosaccharomyces pombe GN=ypt1 PE=1 SV=2)

HSP 1 Score: 153.295 bits (386), Expect = 1.195e-36
Identity = 77/149 (51.68%), Postives = 102/149 (68.46%), Query Frame = 1
Query:  262 EYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSA 708
            EYDYLFKL+LIGDSGVGKS LL RF  + +     STIGV+F  R+  ++ K VK QIWDTAGQER+R ITS+YYRGA G ++VYDVT   +F NV +WL+E+  +    +  +L+GNK+D+     V     K FA+  ++ F+ETSA
Sbjct:    4 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTFELEGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQDSFNNVKQWLQEIDRYAVEGVNRLLVGNKSDMVDKKVVEYSVAKEFADSLNIPFLETSA 152          
BLAST of FC932452 vs. ExPASy Swiss-Prot
Match: RYL1_YARLI (Ras-like GTP-binding protein RYL1 OS=Yarrowia lipolytica GN=RYL1 PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.195e-36
Identity = 74/148 (50.00%), Postives = 105/148 (70.95%), Query Frame = 1
Query:  265 YDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSA 708
            YD L KL+LIGDSGVGKS LL RF +++F     +TIG++F  R++ I N+ VK Q+WDTAGQER+R IT+AYYRGA+G LLVYDVT   +F N+  W + ++ + +  + ++L+GNK DL     VSTE G+A A++  + F+E S+
Sbjct:    8 YDLLIKLLLIGDSGVGKSCLLLRFCEDQFTPSFITTIGIDFKIRTIDIGNQRVKLQVWDTAGQERFRTITTAYYRGAMGILLVYDVTDEKSFNNIENWYQNVQSYANEGVELILVGNKCDLDEKRVVSTEQGQALADKFGIPFLEASS 155          
BLAST of FC932452 vs. ExPASy Swiss-Prot
Match: YPTM1_MAIZE (GTP-binding protein YPTM1 OS=Zea mays GN=YPTM1 PE=2 SV=2)

HSP 1 Score: 152.525 bits (384), Expect = 2.038e-36
Identity = 75/149 (50.34%), Postives = 104/149 (69.80%), Query Frame = 1
Query:  262 EYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSA 708
            E+DYLFKL+LIGDS VGKS  L RF  + +     STIGV+F  R++ ++ K VK QIWDTAGQER+R ITS+YYRGA G ++VYD+T   +F NV +WL E+  + + ++  +L+GNK DL    AV T   +A+A++  + F+ETSA
Sbjct:    4 EFDYLFKLLLIGDSSVGKSCFLLRFADDSYVDSYISTIGVDFKIRTVEVEGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDITDMESFNNVKQWLDEIDRYANDSVRKLLVGNKCDLAENRAVDTSVAQAYAQEVGIPFLETSA 152          
BLAST of FC932452 vs. ExPASy Swiss-Prot
Match: RAB13_RAT (Ras-related protein Rab-13 OS=Rattus norvegicus GN=Rab13 PE=2 SV=2)

HSP 1 Score: 152.525 bits (384), Expect = 2.038e-36
Identity = 69/148 (46.62%), Postives = 103/148 (69.59%), Query Frame = 1
Query:  265 YDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSA 708
            YD+LFKL+LIGDSGVGK+ L+ RF ++ FN    STIG++F  R++ I+ K +K Q+WDTAGQER++ IT+AYYRGA+G +LVYD+T   +F+N+  W++ ++E+    +  +L+GNK D+     V  E  +  A +  + F ETSA
Sbjct:    5 YDHLFKLLLIGDSGVGKTCLIIRFAEDNFNSTYISTIGIDFKIRTVEIEGKRIKLQVWDTAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCDMEAKRKVQREQAERLAREHRIRFFETSA 152          
BLAST of FC932452 vs. ExPASy Swiss-Prot
Match: RAB10_PONAB (Ras-related protein Rab-10 OS=Pongo abelii GN=RAB10 PE=2 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 2.038e-36
Identity = 71/148 (47.97%), Postives = 102/148 (68.92%), Query Frame = 1
Query:  265 YDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSA 708
            YD LFKL+LIGDSGVGK+ +L RF+ + FN    STIG++F  +++ +  K +K QIWDTAGQER+  IT++YYRGA+G +LVYD+T   +F+N+ +WLR + EH + ++  ML+GNK D+     V    G+  A +  + F ETSA
Sbjct:    6 YDLLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELQGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISKWLRNIDEHANEDVERMLLGNKCDMDDKRVVPKGKGEQIAREHGIRFFETSA 153          
BLAST of FC932452 vs. ExPASy Swiss-Prot
Match: RAB10_MOUSE (Ras-related protein Rab-10 OS=Mus musculus GN=Rab10 PE=1 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 2.038e-36
Identity = 71/148 (47.97%), Postives = 102/148 (68.92%), Query Frame = 1
Query:  265 YDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSA 708
            YD LFKL+LIGDSGVGK+ +L RF+ + FN    STIG++F  +++ +  K +K QIWDTAGQER+  IT++YYRGA+G +LVYD+T   +F+N+ +WLR + EH + ++  ML+GNK D+     V    G+  A +  + F ETSA
Sbjct:    6 YDLLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELQGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISKWLRNIDEHANEDVERMLLGNKCDMDDKRVVPKGKGEQIAREHGIRFFETSA 153          
The following BLAST results are available for this feature:
BLAST of FC932452 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
YPT1_NEUCR5.363e-3752.35GTP-binding protein ypt1 OS=Neurospora crassa GN=y... [more]
RAB1D_DICDI5.363e-3751.01Ras-related protein Rab-1D OS=Dictyostelium discoi... [more]
RAB1_THEAN9.147e-3749.01Ras-related protein Rab-1 OS=Theileria annulata GN... [more]
RAB10_DISOM9.147e-3747.97Ras-related protein Rab-10 OS=Discopyge ommata PE=... [more]
YPT1_SCHPO1.195e-3651.68GTP-binding protein ypt1 OS=Schizosaccharomyces po... [more]
RYL1_YARLI1.195e-3650.00Ras-like GTP-binding protein RYL1 OS=Yarrowia lipo... [more]
YPTM1_MAIZE2.038e-3650.34GTP-binding protein YPTM1 OS=Zea mays GN=YPTM1 PE=... [more]
RAB13_RAT2.038e-3646.62Ras-related protein Rab-13 OS=Rattus norvegicus GN... [more]
RAB10_PONAB2.038e-3647.97Ras-related protein Rab-10 OS=Pongo abelii GN=RAB1... [more]
RAB10_MOUSE2.038e-3647.97Ras-related protein Rab-10 OS=Mus musculus GN=Rab1... [more]

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Properties
Property NameValue
Genbank descriptionC34208G04EF PostHarveN Citrus clementina cDNA clone C34208G04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932452 ID=FC932452; Name=FC932452; organism=Citrus clementina; type=EST; length=713bp
AACCCCAATCCAAATCAAAAACCGCCGAAACTTTTACAGCAAAACAACAA
TATACAAGCTCCTCTTTGTCACCGCTTCTTTAGCAAAATTCACAAGCTTA
TTAGTTATTACTCTTTAAATAACCCCACCCCTCACAAAGAGAGAGAGAGA
GACACTCTCTGTACTTCTCTGTTTCTTTACCAACTTTCTTTGGGATTCCT
TAGTTACAAGTGAACAGTGACGCATACACCTATATAAATGGCGGGTTACA
AGCCTGATGAGGAGTATGATTACCTTTTCAAGTTGGTTTTGATTGGAGAC
TCAGGCGTTGGTAAATCCAACTTGCTTTCGAGGTTTACAAAAAACGAGTT
TAATTTGGAATCAAAGTCTACTATTGGTGTTGAGTTCGCTACCAGGAGTT
TGAGGATTGATAACAAGGTTGTCAAGGCTCAAATTTGGGACACTGCTGGC
CAAGAAAGGTACCGTGCAATTACAAGTGCTTACTACCGGGGTGCCGTTGG
TGCTTTGCTTGTATACGATGTAACACGACATGCTACATTTCAGAATGTTG
GAAGGTGGTTGAGGGAGTTAAGAGAGCACACAGATCCGAACATTATTGTC
ATGCTCATTGGCAATAAGACAGATCTTCGACACCTTGTGGCTGTCTCAAC
TGAGGATGGGAAAGCTTTTGCTGAGCAGGAGTCTCTCTATTTCATGGAGA
CTTCCGCATTGGA
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