FC932452

Overview
NameFC932452
Unique NameFC932452
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length713
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932452 vs. ExPASy Swiss-Prot
Match: RAB10_HUMAN (Ras-related protein Rab-10 OS=Homo sapiens GN=RAB10 PE=1 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 2.038e-36
Identity = 71/148 (47.97%), Postives = 102/148 (68.92%), Query Frame = 1
Query:  265 YDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSA 708
            YD LFKL+LIGDSGVGK+ +L RF+ + FN    STIG++F  +++ +  K +K QIWDTAGQER+  IT++YYRGA+G +LVYD+T   +F+N+ +WLR + EH + ++  ML+GNK D+     V    G+  A +  + F ETSA
Sbjct:    6 YDLLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELQGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISKWLRNIDEHANEDVERMLLGNKCDMDDKRVVPKGKGEQIAREHGIRFFETSA 153          
BLAST of FC932452 vs. ExPASy Swiss-Prot
Match: RAB10_CANFA (Ras-related protein Rab-10 OS=Canis familiaris GN=RAB10 PE=2 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 2.038e-36
Identity = 71/148 (47.97%), Postives = 102/148 (68.92%), Query Frame = 1
Query:  265 YDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSA 708
            YD LFKL+LIGDSGVGK+ +L RF+ + FN    STIG++F  +++ +  K +K QIWDTAGQER+  IT++YYRGA+G +LVYD+T   +F+N+ +WLR + EH + ++  ML+GNK D+     V    G+  A +  + F ETSA
Sbjct:    6 YDLLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELQGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISKWLRNIDEHANEDVERMLLGNKCDMDDKRVVPKGKGEQIAREHGIRFFETSA 153          
BLAST of FC932452 vs. ExPASy Swiss-Prot
Match: RAB43_RAT (Ras-related protein Rab-43 OS=Rattus norvegicus GN=Rab43 PE=2 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 2.661e-36
Identity = 78/161 (48.45%), Postives = 109/161 (67.70%), Query Frame = 1
Query:  238 MAGYKP---DEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQ-ESLYFMETSA 708
            MAG  P   DE YD+LFKLVL+GD+ VGK+ ++ RF    F+    STIGV+F  ++L I  K VK QIWDTAGQER+R IT +YYR A GA+L YD+++ +TF +V  W+ ++R++   NI+ +LIGNK+DL  L  V   + ++ AE  + L  +ETSA
Sbjct:    1 MAGPGPGDQDEHYDFLFKLVLVGDASVGKTCVVQRFKTGAFSARQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAILAYDISKRSTFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLADLREVPLAEAQSLAEHYDILCAIETSA 161          
BLAST of FC932452 vs. ExPASy Swiss-Prot
Match: RAB35_RAT (Ras-related protein Rab-35 OS=Rattus norvegicus GN=Rab35 PE=2 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 2.661e-36
Identity = 78/149 (52.35%), Postives = 102/149 (68.46%), Query Frame = 1
Query:  262 EYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSA 708
            +YD+LFKL++IGDSGVGKS+LL RF  N F+    +TIGV+F  R++ I+ + VK QIWDTAGQER+R ITS YYRG  G ++VYDVT   +F NV RWL E+ ++ D ++  +L+GNK D      V TED   FA Q  +   ETSA
Sbjct:    4 DYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCD-DVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSA 151          
BLAST of FC932452 vs. ExPASy Swiss-Prot
Match: RAB35_MOUSE (Ras-related protein Rab-35 OS=Mus musculus GN=Rab35 PE=1 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 2.661e-36
Identity = 78/149 (52.35%), Postives = 102/149 (68.46%), Query Frame = 1
Query:  262 EYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSA 708
            +YD+LFKL++IGDSGVGKS+LL RF  N F+    +TIGV+F  R++ I+ + VK QIWDTAGQER+R ITS YYRG  G ++VYDVT   +F NV RWL E+ ++ D ++  +L+GNK D      V TED   FA Q  +   ETSA
Sbjct:    4 DYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCD-DVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSA 151          
BLAST of FC932452 vs. ExPASy Swiss-Prot
Match: RAB35_HUMAN (Ras-related protein Rab-35 OS=Homo sapiens GN=RAB35 PE=1 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 2.661e-36
Identity = 78/149 (52.35%), Postives = 102/149 (68.46%), Query Frame = 1
Query:  262 EYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSA 708
            +YD+LFKL++IGDSGVGKS+LL RF  N F+    +TIGV+F  R++ I+ + VK QIWDTAGQER+R ITS YYRG  G ++VYDVT   +F NV RWL E+ ++ D ++  +L+GNK D      V TED   FA Q  +   ETSA
Sbjct:    4 DYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCD-DVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSA 151          
BLAST of FC932452 vs. ExPASy Swiss-Prot
Match: RAB1C_HUMAN (Putative Ras-related protein Rab-1C OS=Homo sapiens GN=RAB1C PE=5 SV=2)

HSP 1 Score: 152.14 bits (383), Expect = 2.661e-36
Identity = 76/148 (51.35%), Postives = 100/148 (67.57%), Query Frame = 1
Query:  265 YDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSA 708
            YD LFKL+LIGDSGVGKS LL RF  + +     STIGV+F  +++ +D K +K QIWDTAGQER+  ITS+YYRGA G L+VYDVT   ++ NV +WL+E+  H   N+  +L+GNK+DL     V     K FA+   + F+ETSA
Sbjct:    5 YDCLFKLLLIGDSGVGKSCLLLRFADDPYTESYISTIGVDFKIQTIELDGKTIKLQIWDTAGQERFWTITSSYYRGAHGFLVVYDVTDQESYANVKQWLQEIDRHASENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSA 152          
BLAST of FC932452 vs. ExPASy Swiss-Prot
Match: SEC4_CANGA (Ras-related protein SEC4 OS=Candida glabrata GN=SEC4 PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 3.476e-36
Identity = 74/150 (49.33%), Postives = 109/150 (72.67%), Query Frame = 1
Query:  259 EEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSA 708
            + YD + K++LIGDSGVGKS LL RF +++FN    +TIG++F  +++ I+ K VK Q+WDTAGQER+R IT+AYYRGA+G +LVYDVT   TF N+ +W + + EH +    ++L+GNK+D+   V V+ E G+A A++  L F+E+SA
Sbjct:   15 KSYDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFANIKQWFKTVNEHANDEAQLLLVGNKSDMDTRV-VTYEQGEALAKELGLPFIESSA 163          
BLAST of FC932452 vs. ExPASy Swiss-Prot
Match: RAB4A_DANRE (Ras-related protein Rab-4A OS=Danio rerio GN=rab4a PE=2 SV=2)

HSP 1 Score: 151.754 bits (382), Expect = 3.476e-36
Identity = 74/151 (49.01%), Postives = 102/151 (67.55%), Query Frame = 1
Query:  259 EEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSAL 711
            E YD+LFK ++IG++G GKS LL +F +  F  +S  TIGVEF ++ + + NK VK QIWDTAGQER+R++T +YYRGA GALLVYD+T   T+  +  WL + R     NI+++L GNK DL     V+  +   FA++  L F+ETSAL
Sbjct:    3 ETYDFLFKFLVIGNAGTGKSCLLHQFIEKRFKDDSNHTIGVEFGSKIISVVNKFVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSAL 153          
BLAST of FC932452 vs. ExPASy Swiss-Prot
Match: RAB13_MOUSE (Ras-related protein Rab-13 OS=Mus musculus GN=Rab13 PE=2 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 3.476e-36
Identity = 69/148 (46.62%), Postives = 103/148 (69.59%), Query Frame = 1
Query:  265 YDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSA 708
            YD+LFKL+LIGDSGVGK+ L+ RF ++ FN    STIG++F  R++ I+ K +K Q+WDTAGQER++ IT+AYYRGA+G +LVYD+T   +F+N+  W++ ++E+    +  +L+GNK D+     V  E  +  A +  + F ETSA
Sbjct:    5 YDHLFKLLLIGDSGVGKTCLIIRFAEDNFNSTYISTIGIDFKIRTVDIEGKRIKLQVWDTAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCDMEAKRQVQREQAEKLAREHRIRFFETSA 152          
The following BLAST results are available for this feature:
BLAST of FC932452 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB10_HUMAN2.038e-3647.97Ras-related protein Rab-10 OS=Homo sapiens GN=RAB1... [more]
RAB10_CANFA2.038e-3647.97Ras-related protein Rab-10 OS=Canis familiaris GN=... [more]
RAB43_RAT2.661e-3648.45Ras-related protein Rab-43 OS=Rattus norvegicus GN... [more]
RAB35_RAT2.661e-3652.35Ras-related protein Rab-35 OS=Rattus norvegicus GN... [more]
RAB35_MOUSE2.661e-3652.35Ras-related protein Rab-35 OS=Mus musculus GN=Rab3... [more]
RAB35_HUMAN2.661e-3652.35Ras-related protein Rab-35 OS=Homo sapiens GN=RAB3... [more]
RAB1C_HUMAN2.661e-3651.35Putative Ras-related protein Rab-1C OS=Homo sapien... [more]
SEC4_CANGA3.476e-3649.33Ras-related protein SEC4 OS=Candida glabrata GN=SE... [more]
RAB4A_DANRE3.476e-3649.01Ras-related protein Rab-4A OS=Danio rerio GN=rab4a... [more]
RAB13_MOUSE3.476e-3646.62Ras-related protein Rab-13 OS=Mus musculus GN=Rab1... [more]

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Properties
Property NameValue
Genbank descriptionC34208G04EF PostHarveN Citrus clementina cDNA clone C34208G04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932452 ID=FC932452; Name=FC932452; organism=Citrus clementina; type=EST; length=713bp
AACCCCAATCCAAATCAAAAACCGCCGAAACTTTTACAGCAAAACAACAA
TATACAAGCTCCTCTTTGTCACCGCTTCTTTAGCAAAATTCACAAGCTTA
TTAGTTATTACTCTTTAAATAACCCCACCCCTCACAAAGAGAGAGAGAGA
GACACTCTCTGTACTTCTCTGTTTCTTTACCAACTTTCTTTGGGATTCCT
TAGTTACAAGTGAACAGTGACGCATACACCTATATAAATGGCGGGTTACA
AGCCTGATGAGGAGTATGATTACCTTTTCAAGTTGGTTTTGATTGGAGAC
TCAGGCGTTGGTAAATCCAACTTGCTTTCGAGGTTTACAAAAAACGAGTT
TAATTTGGAATCAAAGTCTACTATTGGTGTTGAGTTCGCTACCAGGAGTT
TGAGGATTGATAACAAGGTTGTCAAGGCTCAAATTTGGGACACTGCTGGC
CAAGAAAGGTACCGTGCAATTACAAGTGCTTACTACCGGGGTGCCGTTGG
TGCTTTGCTTGTATACGATGTAACACGACATGCTACATTTCAGAATGTTG
GAAGGTGGTTGAGGGAGTTAAGAGAGCACACAGATCCGAACATTATTGTC
ATGCTCATTGGCAATAAGACAGATCTTCGACACCTTGTGGCTGTCTCAAC
TGAGGATGGGAAAGCTTTTGCTGAGCAGGAGTCTCTCTATTTCATGGAGA
CTTCCGCATTGGA
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