FC932452

Overview
NameFC932452
Unique NameFC932452
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length713
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932452 vs. ExPASy Swiss-Prot
Match: SEC4_YEAST (Ras-related protein SEC4 OS=Saccharomyces cerevisiae GN=SEC4 PE=1 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 4.540e-36
Identity = 72/150 (48.00%), Postives = 109/150 (72.67%), Query Frame = 1
Query:  259 EEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSA 708
            + YD + K++LIGDSGVGKS LL RF +++FN    +TIG++F  +++ I+ K VK Q+WDTAGQER+R IT+AYYRGA+G +LVYDVT   TF N+ +W + + EH +    ++L+GNK+D+   V V+ + G+A A++  + F+E+SA
Sbjct:   15 KSYDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRV-VTADQGEALAKELGIPFIESSA 163          
BLAST of FC932452 vs. ExPASy Swiss-Prot
Match: RAB19_MOUSE (Ras-related protein Rab-19 OS=Mus musculus GN=Rab19 PE=2 SV=3)

HSP 1 Score: 151.369 bits (381), Expect = 4.540e-36
Identity = 74/152 (48.68%), Postives = 103/152 (67.76%), Query Frame = 1
Query:  256 DEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLY-FMETSA 708
            DE  DYLFK++LIGDS VGK+ ++  F    ++   ++TIGV+F  RSL ID K VK Q+WDTAGQER+R IT +YYR A  A++ YD+TR +TF++V  W+ E+ ++   N+++MLIGNK+DL     V  ED    AE+  L   +ETSA
Sbjct:   11 DENVDYLFKVILIGDSNVGKTCVVQHFKSGVYSESQQNTIGVDFTVRSLEIDGKKVKMQVWDTAGQERFRTITQSYYRSAHAAIIAYDLTRRSTFESVPHWIHEIEKYGAANLVIMLIGNKSDLWEKRHVLFEDACTLAEKHGLLAVLETSA 162          
BLAST of FC932452 vs. ExPASy Swiss-Prot
Match: RAB13_HUMAN (Ras-related protein Rab-13 OS=Homo sapiens GN=RAB13 PE=1 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 4.540e-36
Identity = 69/148 (46.62%), Postives = 102/148 (68.92%), Query Frame = 1
Query:  265 YDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSA 708
            YD+LFKL+LIGDSGVGK+ L+ RF ++ FN    STIG++F  R++ I+ K +K Q+WDTAGQER++ IT+AYYRGA+G +LVYD+T   +F+N+  W++ ++E+    +  +L+GNK D+     V  E     A +  + F ETSA
Sbjct:    5 YDHLFKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIEGKKIKLQVWDTAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCDMEAKRKVQKEQADKLAREHGIRFFETSA 152          
BLAST of FC932452 vs. ExPASy Swiss-Prot
Match: RAB13_BOVIN (Ras-related protein Rab-13 OS=Bos taurus GN=RAB13 PE=2 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 4.540e-36
Identity = 69/148 (46.62%), Postives = 102/148 (68.92%), Query Frame = 1
Query:  265 YDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSA 708
            YD+LFKL+LIGDSGVGK+ L+ RF ++ FN    STIG++F  R++ I+ K +K Q+WDTAGQER++ IT+AYYRGA+G +LVYD+T   +F+N+  W++ ++E+    +  +L+GNK D+     V  E     A +  + F ETSA
Sbjct:    5 YDHLFKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFRIRTVDIEGKKIKLQVWDTAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCDMEAKRKVQKEQADKLAREHGIRFFETSA 152          
BLAST of FC932452 vs. ExPASy Swiss-Prot
Match: RAB10_CHICK (Ras-related protein Rab-10 OS=Gallus gallus GN=RAB10 PE=2 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 4.540e-36
Identity = 70/148 (47.30%), Postives = 101/148 (68.24%), Query Frame = 1
Query:  265 YDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSA 708
            YD LFKL+LIGDSGVGK+ +L RF+ + FN    STIG++   +++ +  K +K QIWDTAGQER+  IT++YYRGA+G +LVYD+T   +F+N+ +WLR + EH + ++  ML+GNK D+     V    G+  A +  + F ETSA
Sbjct:    6 YDLLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDLKIKTVELQGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNAKSFENISKWLRNIDEHANEDVERMLLGNKCDMEDKRVVPKAKGEQIAREHGIRFFETSA 153          
BLAST of FC932452 vs. ExPASy Swiss-Prot
Match: RAB5C_BOVIN (Ras-related protein Rab-5C OS=Bos taurus GN=RAB5C PE=2 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 5.929e-36
Identity = 72/144 (50.00%), Postives = 99/144 (68.75%), Query Frame = 1
Query:  277 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSA 708
            FKLVL+G+S VGKS+L+ RF K +F+   +STIG  F T+++ +D+  VK +IWDTAGQERY ++   YYRGA  A++VYD+T   TF     W++EL+    PNI++ L GNK DL    AV  ++ +A+AE  SL FMETSA
Sbjct:   22 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASKRAVEFQEAQAYAEDNSLLFMETSA 165          
BLAST of FC932452 vs. ExPASy Swiss-Prot
Match: RAB4A_RAT (Ras-related protein Rab-4A OS=Rattus norvegicus GN=Rab4a PE=2 SV=2)

HSP 1 Score: 150.984 bits (380), Expect = 5.929e-36
Identity = 73/151 (48.34%), Postives = 102/151 (67.55%), Query Frame = 1
Query:  259 EEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSAL 711
            E YD+LFK ++IG++G GKS LL +F + +F  +S  TIGVEF ++ + +  K VK QIWDTAGQER+R++T +YYRGA GALLVYD+T   T+  +  WL + R     NI+++L GNK DL     V+  +   FA++  L F+ETSAL
Sbjct:    3 ETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSAL 153          
BLAST of FC932452 vs. ExPASy Swiss-Prot
Match: RAB4A_HUMAN (Ras-related protein Rab-4A OS=Homo sapiens GN=RAB4A PE=1 SV=2)

HSP 1 Score: 150.984 bits (380), Expect = 5.929e-36
Identity = 73/151 (48.34%), Postives = 102/151 (67.55%), Query Frame = 1
Query:  259 EEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSAL 711
            E YD+LFK ++IG++G GKS LL +F + +F  +S  TIGVEF ++ + +  K VK QIWDTAGQER+R++T +YYRGA GALLVYD+T   T+  +  WL + R     NI+++L GNK DL     V+  +   FA++  L F+ETSAL
Sbjct:    3 ETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSAL 153          
BLAST of FC932452 vs. ExPASy Swiss-Prot
Match: RAB4A_BOVIN (Ras-related protein Rab-4A OS=Bos taurus GN=RAB4A PE=2 SV=2)

HSP 1 Score: 150.984 bits (380), Expect = 5.929e-36
Identity = 73/151 (48.34%), Postives = 102/151 (67.55%), Query Frame = 1
Query:  259 EEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSAL 711
            E YD+LFK ++IG++G GKS LL +F + +F  +S  TIGVEF ++ + +  K VK QIWDTAGQER+R++T +YYRGA GALLVYD+T   T+  +  WL + R     NI+++L GNK DL     V+  +   FA++  L F+ETSAL
Sbjct:    3 ETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDTDREVTFLEASRFAQENELMFLETSAL 153          
BLAST of FC932452 vs. ExPASy Swiss-Prot
Match: RAB1C_DICDI (Ras-related protein Rab-1C OS=Dictyostelium discoideum GN=Rab1C PE=2 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 5.929e-36
Identity = 72/155 (46.45%), Postives = 105/155 (67.74%), Query Frame = 1
Query:  244 GYKPDEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSA 708
            G +   EYD L K+++IGDSGVGKS +L RF  N F     STIGV+F  R++ +D K +K QIWDTAGQER++ IT++YYRGA G ++VYD+T   +F ++ RWL ++     P+++ +++GNK DL    AV  +  K FA++ ++  METSA
Sbjct:   23 GSESHPEYDMLLKILVIGDSGVGKSCMLLRFADNRFTDSYISTIGVDFCIRTIELDGKKIKLQIWDTAGQERFKTITTSYYRGAHGLIIVYDITSMDSFNSIKRWLIDVDRFASPSVLKLIVGNKCDLNSKRAVDFKIAKKFADELNIPIMETSA 177          
The following BLAST results are available for this feature:
BLAST of FC932452 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
SEC4_YEAST4.540e-3648.00Ras-related protein SEC4 OS=Saccharomyces cerevisi... [more]
RAB19_MOUSE4.540e-3648.68Ras-related protein Rab-19 OS=Mus musculus GN=Rab1... [more]
RAB13_HUMAN4.540e-3646.62Ras-related protein Rab-13 OS=Homo sapiens GN=RAB1... [more]
RAB13_BOVIN4.540e-3646.62Ras-related protein Rab-13 OS=Bos taurus GN=RAB13 ... [more]
RAB10_CHICK4.540e-3647.30Ras-related protein Rab-10 OS=Gallus gallus GN=RAB... [more]
RAB5C_BOVIN5.929e-3650.00Ras-related protein Rab-5C OS=Bos taurus GN=RAB5C ... [more]
RAB4A_RAT5.929e-3648.34Ras-related protein Rab-4A OS=Rattus norvegicus GN... [more]
RAB4A_HUMAN5.929e-3648.34Ras-related protein Rab-4A OS=Homo sapiens GN=RAB4... [more]
RAB4A_BOVIN5.929e-3648.34Ras-related protein Rab-4A OS=Bos taurus GN=RAB4A ... [more]
RAB1C_DICDI5.929e-3646.45Ras-related protein Rab-1C OS=Dictyostelium discoi... [more]

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Properties
Property NameValue
Genbank descriptionC34208G04EF PostHarveN Citrus clementina cDNA clone C34208G04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932452 ID=FC932452; Name=FC932452; organism=Citrus clementina; type=EST; length=713bp
AACCCCAATCCAAATCAAAAACCGCCGAAACTTTTACAGCAAAACAACAA
TATACAAGCTCCTCTTTGTCACCGCTTCTTTAGCAAAATTCACAAGCTTA
TTAGTTATTACTCTTTAAATAACCCCACCCCTCACAAAGAGAGAGAGAGA
GACACTCTCTGTACTTCTCTGTTTCTTTACCAACTTTCTTTGGGATTCCT
TAGTTACAAGTGAACAGTGACGCATACACCTATATAAATGGCGGGTTACA
AGCCTGATGAGGAGTATGATTACCTTTTCAAGTTGGTTTTGATTGGAGAC
TCAGGCGTTGGTAAATCCAACTTGCTTTCGAGGTTTACAAAAAACGAGTT
TAATTTGGAATCAAAGTCTACTATTGGTGTTGAGTTCGCTACCAGGAGTT
TGAGGATTGATAACAAGGTTGTCAAGGCTCAAATTTGGGACACTGCTGGC
CAAGAAAGGTACCGTGCAATTACAAGTGCTTACTACCGGGGTGCCGTTGG
TGCTTTGCTTGTATACGATGTAACACGACATGCTACATTTCAGAATGTTG
GAAGGTGGTTGAGGGAGTTAAGAGAGCACACAGATCCGAACATTATTGTC
ATGCTCATTGGCAATAAGACAGATCTTCGACACCTTGTGGCTGTCTCAAC
TGAGGATGGGAAAGCTTTTGCTGAGCAGGAGTCTCTCTATTTCATGGAGA
CTTCCGCATTGGA
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