FC932452

Overview
NameFC932452
Unique NameFC932452
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length713
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932452 vs. ExPASy Swiss-Prot
Match: RB11A_DICDI (Ras-related protein Rab-11A OS=Dictyostelium discoideum GN=rab11A PE=1 SV=1)

HSP 1 Score: 228.409 bits (581), Expect = 2.922e-59
Identity = 108/151 (71.52%), Postives = 134/151 (88.74%), Query Frame = 1
Query:  259 EEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSAL 711
            EEYDYL+K+VLIGDSGVGKSNLLSRFT+NEF+LE+KSTIGVEFATR+++ + K +KAQ+WDTAGQERYRAITSAYYRGAVGALLVYD+ + AT+++V RW+ ELRE+ D NI +ML+GNK+DLRHL  VST++ K F+E+  L F+ETSAL
Sbjct:    8 EEYDYLYKIVLIGDSGVGKSNLLSRFTRNEFSLETKSTIGVEFATRTIQTEGKTIKAQVWDTAGQERYRAITSAYYRGAVGALLVYDIAKQATYKSVERWILELRENADRNIEIMLVGNKSDLRHLREVSTDEAKEFSEKHKLTFIETSAL 158          
BLAST of FC932452 vs. ExPASy Swiss-Prot
Match: YPT31_YEAST (GTP-binding protein YPT31/YPT8 OS=Saccharomyces cerevisiae GN=YPT31 PE=1 SV=3)

HSP 1 Score: 223.402 bits (568), Expect = 9.400e-58
Identity = 108/150 (72.00%), Postives = 128/150 (85.33%), Query Frame = 1
Query:  262 EYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSAL 711
            +YD LFK+VLIGDSGVGKSNLLSRFTKNEFN++SKSTIGVEFATR+L ID K +KAQIWDTAGQERYRAITSAYYRGAVGAL+VYD+++ ++++N   WL ELRE+ D N+ V LIGNK+DL HL AV TE+ K FA++  L F ETSAL
Sbjct:    9 DYDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIDGKRIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSAL 158          
BLAST of FC932452 vs. ExPASy Swiss-Prot
Match: RGP1_ORYSJ (Ras-related protein RGP1 OS=Oryza sativa subsp. japonica GN=RGP1 PE=2 SV=2)

HSP 1 Score: 221.09 bits (562), Expect = 4.665e-57
Identity = 106/151 (70.20%), Postives = 128/151 (84.77%), Query Frame = 1
Query:  259 EEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSAL 711
            ++ DY+FK+VLIGDS VGKS LL+RF +NEFNL+SK+TIGVEF TR+L ID + VKAQIWDTAGQERYRA+TSAYYRGAVGA+LVYD+T+  +F +V RWL ELR H D NI++MLIGNK+DL  L  V TED K FAE+E+L+FMETSAL
Sbjct:   13 QKIDYVFKVVLIGDSAVGKSQLLARFARNEFNLDSKATIGVEFQTRTLHIDARTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDHVARWLEELRGHADKNIVIMLIGNKSDLGTLRVVPTEDAKEFAERENLFFMETSAL 163          
BLAST of FC932452 vs. ExPASy Swiss-Prot
Match: YPT32_YEAST (GTP-binding protein YPT32/YPT11 OS=Saccharomyces cerevisiae GN=YPT32 PE=1 SV=3)

HSP 1 Score: 219.164 bits (557), Expect = 1.773e-56
Identity = 104/150 (69.33%), Postives = 128/150 (85.33%), Query Frame = 1
Query:  262 EYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSAL 711
            +YDYLFK+VLIGDSGVGKSNLLSRFT +EFN+ESKSTIGVEFATR++ ++NK +KAQIWDTAGQERYRAITSAYYRGAVGAL+VYD+++ ++++N   WL ELRE+ D N+ V LIGNK+DL HL AV T++ K FA +  + F ETSAL
Sbjct:    9 DYDYLFKIVLIGDSGVGKSNLLSRFTTDEFNIESKSTIGVEFATRTIEVENKKIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLTELRENADDNVAVGLIGNKSDLAHLRAVPTDEAKNFAMENQMLFTETSAL 158          
BLAST of FC932452 vs. ExPASy Swiss-Prot
Match: RB11D_TOBAC (Ras-related protein Rab11D OS=Nicotiana tabacum GN=RAB11D PE=2 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 1.501e-55
Identity = 102/151 (67.55%), Postives = 127/151 (84.11%), Query Frame = 1
Query:  259 EEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSAL 711
            ++ DY+FK+VLIGDS VGKS +L+RF +NEF+L+SK+TIGVEF TR+L I +K VKAQIWDTAGQERYRA+TSAYYRGAVGA+LVYD+T+  TF ++ RWL ELR H D NI++MLIGNKTDL    AV TED K FA++E L+F+ETSA+
Sbjct:   10 QKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLAIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQTFDHIPRWLEELRAHADRNIVIMLIGNKTDLEDQRAVPTEDAKEFAQKEGLFFLETSAM 160          
BLAST of FC932452 vs. ExPASy Swiss-Prot
Match: RB11A_LOTJA (Ras-related protein Rab11A OS=Lotus japonicus GN=RAB11A PE=2 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 3.343e-55
Identity = 103/148 (69.59%), Postives = 125/148 (84.46%), Query Frame = 1
Query:  268 DYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSAL 711
            DY+FK+VLIGDS VGKS +L+RF +NEF+L+SKSTIGVEF TR+L ID+K VKAQIWDTAGQERYRA+TSAYYRGAVGA+LVYD+T+  TF ++ RWL ELR H D NI+++LIGNK DL +   V TED K FAE+E L+F+ETSAL
Sbjct:   15 DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKSTIGVEFQTRTLVIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQTFDHIPRWLEELRNHADKNIVIILIGNKCDLVNQRDVPTEDAKEFAEKEGLFFLETSAL 162          
BLAST of FC932452 vs. ExPASy Swiss-Prot
Match: ARA4_ARATH (Ras-related protein ARA-4 OS=Arabidopsis thaliana GN=ARA-4 PE=2 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 5.703e-55
Identity = 103/148 (69.59%), Postives = 124/148 (83.78%), Query Frame = 1
Query:  268 DYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSAL 711
            +YLFK+V+IGDS VGKSNLL+R+ +NEFN  SK+TIGVEF T+S+ ID K VKAQIWDTAGQER+RA+TSAYYRGAVGAL+VYD+TR +TF+NVGRWL EL  H+D  +  MLIGNK DL  + AVS E+GK+ AE E L+FMETSAL
Sbjct:   10 EYLFKIVIIGDSAVGKSNLLTRYARNEFNPNSKATIGVEFQTQSMLIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRSSTFENVGRWLDELNTHSDTTVAKMLIGNKCDLESIRAVSVEEGKSLAESEGLFFMETSAL 157          
BLAST of FC932452 vs. ExPASy Swiss-Prot
Match: RB11C_TOBAC (Ras-related protein Rab11C OS=Nicotiana tabacum GN=RAB11C PE=2 SV=1)

HSP 1 Score: 212.231 bits (539), Expect = 2.167e-54
Identity = 100/151 (66.23%), Postives = 126/151 (83.44%), Query Frame = 1
Query:  259 EEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSAL 711
            ++ DY+FK+VLIGDS VGK+ +L+RF +NEF+L+SK+TIGVEF TR+L I +K VKAQIWDTAGQERYRA+TSAYYRGAVGA+LVYD+T+  TF ++ RWL ELR H D NI++ML GNKTDL    AV TED K FA++E L+F+ETSA+
Sbjct:   10 QKIDYVFKVVLIGDSAVGKTQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQTFDHIPRWLEELRAHADRNIVIMLTGNKTDLEDQRAVPTEDAKEFAQKEGLFFLETSAM 160          
BLAST of FC932452 vs. ExPASy Swiss-Prot
Match: ARA1_ARATH (Ras-related protein ARA-1 OS=Arabidopsis thaliana GN=ARA-1 PE=2 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 3.697e-54
Identity = 100/148 (67.57%), Postives = 126/148 (85.14%), Query Frame = 1
Query:  268 DYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSAL 711
            +YLFK+V+IGDS VGKSNLLSR+ +NEF+  SK+TIGVEF T+S+ I+ K VKAQIWDTAGQER+RA+TSAYYRGAVGAL+VYD+TR  TF++VGRWL EL+ H+D  +  ML+GNK DL ++ AVS E+GKA AE+E L+F+ETSAL
Sbjct:   10 EYLFKIVVIGDSAVGKSNLLSRYARNEFSANSKATIGVEFQTQSMEIEGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRTTFESVGRWLDELKIHSDTTVARMLVGNKCDLENIRAVSVEEGKALAEEEGLFFVETSAL 157          
BLAST of FC932452 vs. ExPASy Swiss-Prot
Match: RAB25_MOUSE (Ras-related protein Rab-25 OS=Mus musculus GN=Rab25 PE=1 SV=2)

HSP 1 Score: 202.601 bits (514), Expect = 1.717e-51
Identity = 97/156 (62.18%), Postives = 126/156 (80.77%), Query Frame = 1
Query:  244 GYKPDEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSAL 711
            G + DE+Y+++FK+VLIG+SGVGK+NLLSRFT+NEF+ +S++TIGVEF+TR++ +    VKAQIWDTAG ERYRAITSAYYRGAVGALLV+D+T+H T+  V RWL+EL +H +  I+VML+GNK+DL     V TE+   FAE   L F+ETSAL
Sbjct:    2 GNRTDEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEACMFAENNGLLFLETSAL 157          
The following BLAST results are available for this feature:
BLAST of FC932452 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RB11A_DICDI2.922e-5971.52Ras-related protein Rab-11A OS=Dictyostelium disco... [more]
YPT31_YEAST9.400e-5872.00GTP-binding protein YPT31/YPT8 OS=Saccharomyces ce... [more]
RGP1_ORYSJ4.665e-5770.20Ras-related protein RGP1 OS=Oryza sativa subsp. ja... [more]
YPT32_YEAST1.773e-5669.33GTP-binding protein YPT32/YPT11 OS=Saccharomyces c... [more]
RB11D_TOBAC1.501e-5567.55Ras-related protein Rab11D OS=Nicotiana tabacum GN... [more]
RB11A_LOTJA3.343e-5569.59Ras-related protein Rab11A OS=Lotus japonicus GN=R... [more]
ARA4_ARATH5.703e-5569.59Ras-related protein ARA-4 OS=Arabidopsis thaliana ... [more]
RB11C_TOBAC2.167e-5466.23Ras-related protein Rab11C OS=Nicotiana tabacum GN... [more]
ARA1_ARATH3.697e-5467.57Ras-related protein ARA-1 OS=Arabidopsis thaliana ... [more]
RAB25_MOUSE1.717e-5162.18Ras-related protein Rab-25 OS=Mus musculus GN=Rab2... [more]

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Properties
Property NameValue
Genbank descriptionC34208G04EF PostHarveN Citrus clementina cDNA clone C34208G04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932452 ID=FC932452; Name=FC932452; organism=Citrus clementina; type=EST; length=713bp
AACCCCAATCCAAATCAAAAACCGCCGAAACTTTTACAGCAAAACAACAA
TATACAAGCTCCTCTTTGTCACCGCTTCTTTAGCAAAATTCACAAGCTTA
TTAGTTATTACTCTTTAAATAACCCCACCCCTCACAAAGAGAGAGAGAGA
GACACTCTCTGTACTTCTCTGTTTCTTTACCAACTTTCTTTGGGATTCCT
TAGTTACAAGTGAACAGTGACGCATACACCTATATAAATGGCGGGTTACA
AGCCTGATGAGGAGTATGATTACCTTTTCAAGTTGGTTTTGATTGGAGAC
TCAGGCGTTGGTAAATCCAACTTGCTTTCGAGGTTTACAAAAAACGAGTT
TAATTTGGAATCAAAGTCTACTATTGGTGTTGAGTTCGCTACCAGGAGTT
TGAGGATTGATAACAAGGTTGTCAAGGCTCAAATTTGGGACACTGCTGGC
CAAGAAAGGTACCGTGCAATTACAAGTGCTTACTACCGGGGTGCCGTTGG
TGCTTTGCTTGTATACGATGTAACACGACATGCTACATTTCAGAATGTTG
GAAGGTGGTTGAGGGAGTTAAGAGAGCACACAGATCCGAACATTATTGTC
ATGCTCATTGGCAATAAGACAGATCTTCGACACCTTGTGGCTGTCTCAAC
TGAGGATGGGAAAGCTTTTGCTGAGCAGGAGTCTCTCTATTTCATGGAGA
CTTCCGCATTGGA
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