FC932452

Overview
NameFC932452
Unique NameFC932452
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length713
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932452 vs. ExPASy Swiss-Prot
Match: RAB25_BOVIN (Ras-related protein Rab-25 OS=Bos taurus GN=RAB25 PE=2 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 2.243e-51
Identity = 95/156 (60.90%), Postives = 127/156 (81.41%), Query Frame = 1
Query:  244 GYKPDEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSAL 711
            G + +E+Y+++FK+VLIG+SGVGK+NLLSRFT+NEF+ +S++TIGVEF+TR++ +    +KAQIWDTAG ERYRAITSAYYRGAVGALLV+D+T+H T+  V RWL+EL +H +  I+VML+GNK+DL     V TE+ + FAE   L F+ETSAL
Sbjct:    2 GNRAEEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAIKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQSREVPTEEARMFAENNGLLFLETSAL 157          
BLAST of FC932452 vs. ExPASy Swiss-Prot
Match: RAB25_HUMAN (Ras-related protein Rab-25 OS=Homo sapiens GN=RAB25 PE=1 SV=2)

HSP 1 Score: 201.445 bits (511), Expect = 3.825e-51
Identity = 96/156 (61.54%), Postives = 126/156 (80.77%), Query Frame = 1
Query:  244 GYKPDEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSAL 711
            G   +E+Y+++FK+VLIG+SGVGK+NLLSRFT+NEF+ +S++TIGVEF+TR++ +    VKAQIWDTAG ERYRAITSAYYRGAVGALLV+D+T+H T+  V RWL+EL +H +  I+VML+GNK+DL     V TE+ + FAE   L F+ETSAL
Sbjct:    2 GNGTEEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSAL 157          
BLAST of FC932452 vs. ExPASy Swiss-Prot
Match: RAB25_RABIT (Ras-related protein Rab-25 OS=Oryctolagus cuniculus GN=RAB25 PE=2 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 4.996e-51
Identity = 96/156 (61.54%), Postives = 126/156 (80.77%), Query Frame = 1
Query:  244 GYKPDEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSAL 711
            G   +E+Y+++FK+VLIG+SGVGK+NLLSRFT+NEF+ +S++TIGVEF+TR++ +    VKAQIWDTAG ERYRAITSAYYRGAVGALLV+D+T+H T+  V RWL+EL +H +  I+VML+GNK+DL     V TE+ + FAE   L F+ETSAL
Sbjct:    2 GNGKEEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVLLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSAL 157          
BLAST of FC932452 vs. ExPASy Swiss-Prot
Match: RB11C_DICDI (Ras-related protein Rab-11C OS=Dictyostelium discoideum GN=rab11C PE=1 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 4.229e-50
Identity = 91/152 (59.87%), Postives = 123/152 (80.92%), Query Frame = 1
Query:  256 DEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSAL 711
            +EE +YLFK+V+IGDS VGKSNLL+RFT+NEF  ++K+TIGV+F T+S+ IDNK + AQ WDTAGQER+RA+TS YYRGAVGA++VYD+T   +F+NV RWL ELRE  + +I++M++GNK+DL     V T++ +AFAE   + F+ETSAL
Sbjct:    4 EEEAEYLFKIVIIGDSAVGKSNLLNRFTRNEFTEKTKATIGVDFGTKSIEIDNKTITAQCWDTAGQERFRAVTSGYYRGAVGAMIVYDITSKISFKNVTRWLNELREMAEQDILIMMVGNKSDLEMSREVPTKEAQAFAESNKISFLETSAL 155          
BLAST of FC932452 vs. ExPASy Swiss-Prot
Match: RB11B_DICDI (Ras-related protein Rab-11B OS=Dictyostelium discoideum GN=rab11B PE=2 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 4.377e-47
Identity = 86/150 (57.33%), Postives = 121/150 (80.67%), Query Frame = 1
Query:  262 EYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSAL 711
            EYDYL K+V+IGDSGVGKSNLLSR+ KNEF++   STIGVEF+T++L+IDNK++K Q+WDTAGQE+Y +IT +YY+GA+GAL+VY++    +F N+ +WL++ RE+   +  +ML+GNK+DL+    VST +GK FAE+  + F+ETSAL
Sbjct:    7 EYDYLCKIVVIGDSGVGKSNLLSRYNKNEFSVGKLSTIGVEFSTKTLKIDNKLIKLQLWDTAGQEKYNSITESYYKGAIGALIVYNIADRNSFNNLEKWLKKFRENAHQDYGIMLVGNKSDLKEYREVSTLEGKQFAEKHYMQFIETSAL 156          
BLAST of FC932452 vs. ExPASy Swiss-Prot
Match: YPTV4_VOLCA (GTP-binding protein yptV4 OS=Volvox carteri GN=YPTV4 PE=3 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.557e-44
Identity = 85/148 (57.43%), Postives = 108/148 (72.97%), Query Frame = 1
Query:  265 YDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSA 708
            Y YLFK ++IGD+GVGKS LL +FT   F      TIGVEF  R + ID K +K QIWDTAGQE +R+IT +YYRGA GALLVYD+TR  TF ++  WL + R+H +PN+ +MLIGNK DL H  AV+TE+G+ FA++  L F+ETSA
Sbjct:    3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMINIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNMTIMLIGNKCDLTHRRAVTTEEGEQFAKEHGLIFLETSA 150          
BLAST of FC932452 vs. ExPASy Swiss-Prot
Match: YPTC4_CHLRE (GTP-binding protein YPTC4 OS=Chlamydomonas reinhardtii GN=YPTC4 PE=3 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.557e-44
Identity = 85/148 (57.43%), Postives = 108/148 (72.97%), Query Frame = 1
Query:  265 YDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSA 708
            Y YLFK ++IGD+GVGKS LL +FT   F      TIGVEF  R + ID K +K QIWDTAGQE +R+IT +YYRGA GALLVYD+TR  TF ++  WL + R+H +PN+ +MLIGNK DL H  AV+TE+G+ FA++  L F+ETSA
Sbjct:    3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMINIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNMTIMLIGNKCDLTHRRAVTTEEGEQFAKEHGLIFLETSA 150          
BLAST of FC932452 vs. ExPASy Swiss-Prot
Match: RAB2A_MAIZE (Ras-related protein Rab-2-A OS=Zea mays GN=RAB2A PE=2 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 1.721e-43
Identity = 84/148 (56.76%), Postives = 106/148 (71.62%), Query Frame = 1
Query:  265 YDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSA 708
            Y YLFK ++IGD+GVGKS LL +FT   F      TIGVEF  R + IDNK +K QIWDTAGQE +R+IT +YYRGA GALLVYD+TR  TF ++  WL + R+H + N+ +ML+GNK DL H  AVS E+G+ FA++  L FME SA
Sbjct:    3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMINIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLVGNKCDLSHRRAVSYEEGEQFAKEHGLIFMEASA 150          
BLAST of FC932452 vs. ExPASy Swiss-Prot
Match: RAB2B_MAIZE (Ras-related protein Rab-2-B OS=Zea mays GN=RAB2B PE=2 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 2.248e-43
Identity = 84/148 (56.76%), Postives = 106/148 (71.62%), Query Frame = 1
Query:  265 YDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSA 708
            Y YLFK ++IGD+GVGKS LL +FT   F      TIGVEF  R + IDNK +K QIWDTAGQE +R+IT +YYRGA GALLVYD+TR  TF ++  WL + R+H + N+ +ML+GNK DL H  AVS E+G+ FA++  L FME SA
Sbjct:    3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLVGNKCDLSHRRAVSYEEGEQFAKEHGLIFMEASA 150          
BLAST of FC932452 vs. ExPASy Swiss-Prot
Match: RAB14_DICDI (Ras-related protein Rab-14 OS=Dictyostelium discoideum GN=rab14 PE=1 SV=2)

HSP 1 Score: 174.866 bits (442), Expect = 3.834e-43
Identity = 83/148 (56.08%), Postives = 111/148 (75.00%), Query Frame = 1
Query:  265 YDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSA 708
            Y+Y+FK ++IGD GVGKS LL +FT+N+F  +S  TIGVEF TR + ++NK +K QIWDTAGQER+RA+T +YYRGA GALLVYD+TR  T+ ++  WL + R  T+PN ++MLIGNK DL     V+ E+  AFA+Q  L F+E+SA
Sbjct:    5 YEYIFKYIIIGDMGVGKSCLLHQFTENKFVPDSPHTIGVEFGTRIVDVNNKKIKLQIWDTAGQERFRAVTRSYYRGAAGALLVYDITRRITYNHLTTWLTDARNLTNPNTVIMLIGNKKDLEGQRDVTYEEASAFAKQNGLIFVESSA 152          
The following BLAST results are available for this feature:
BLAST of FC932452 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB25_BOVIN2.243e-5160.90Ras-related protein Rab-25 OS=Bos taurus GN=RAB25 ... [more]
RAB25_HUMAN3.825e-5161.54Ras-related protein Rab-25 OS=Homo sapiens GN=RAB2... [more]
RAB25_RABIT4.996e-5161.54Ras-related protein Rab-25 OS=Oryctolagus cuniculu... [more]
RB11C_DICDI4.229e-5059.87Ras-related protein Rab-11C OS=Dictyostelium disco... [more]
RB11B_DICDI4.377e-4757.33Ras-related protein Rab-11B OS=Dictyostelium disco... [more]
YPTV4_VOLCA1.557e-4457.43GTP-binding protein yptV4 OS=Volvox carteri GN=YPT... [more]
YPTC4_CHLRE1.557e-4457.43GTP-binding protein YPTC4 OS=Chlamydomonas reinhar... [more]
RAB2A_MAIZE1.721e-4356.76Ras-related protein Rab-2-A OS=Zea mays GN=RAB2A P... [more]
RAB2B_MAIZE2.248e-4356.76Ras-related protein Rab-2-B OS=Zea mays GN=RAB2B P... [more]
RAB14_DICDI3.834e-4356.08Ras-related protein Rab-14 OS=Dictyostelium discoi... [more]

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Properties
Property NameValue
Genbank descriptionC34208G04EF PostHarveN Citrus clementina cDNA clone C34208G04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932452 ID=FC932452; Name=FC932452; organism=Citrus clementina; type=EST; length=713bp
AACCCCAATCCAAATCAAAAACCGCCGAAACTTTTACAGCAAAACAACAA
TATACAAGCTCCTCTTTGTCACCGCTTCTTTAGCAAAATTCACAAGCTTA
TTAGTTATTACTCTTTAAATAACCCCACCCCTCACAAAGAGAGAGAGAGA
GACACTCTCTGTACTTCTCTGTTTCTTTACCAACTTTCTTTGGGATTCCT
TAGTTACAAGTGAACAGTGACGCATACACCTATATAAATGGCGGGTTACA
AGCCTGATGAGGAGTATGATTACCTTTTCAAGTTGGTTTTGATTGGAGAC
TCAGGCGTTGGTAAATCCAACTTGCTTTCGAGGTTTACAAAAAACGAGTT
TAATTTGGAATCAAAGTCTACTATTGGTGTTGAGTTCGCTACCAGGAGTT
TGAGGATTGATAACAAGGTTGTCAAGGCTCAAATTTGGGACACTGCTGGC
CAAGAAAGGTACCGTGCAATTACAAGTGCTTACTACCGGGGTGCCGTTGG
TGCTTTGCTTGTATACGATGTAACACGACATGCTACATTTCAGAATGTTG
GAAGGTGGTTGAGGGAGTTAAGAGAGCACACAGATCCGAACATTATTGTC
ATGCTCATTGGCAATAAGACAGATCTTCGACACCTTGTGGCTGTCTCAAC
TGAGGATGGGAAAGCTTTTGCTGAGCAGGAGTCTCTCTATTTCATGGAGA
CTTCCGCATTGGA
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