FC932452

Overview
NameFC932452
Unique NameFC932452
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length713
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932452 vs. ExPASy Swiss-Prot
Match: DJC27_DANRE (DnaJ homolog subfamily C member 27 OS=Danio rerio GN=dnajc27 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.051e-16
Identity = 42/148 (28.38%), Postives = 82/148 (55.41%), Query Frame = 1
Query:  280 KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTD-----PNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSA 708
            K++ +G++ VGKS ++ R+ +  F  +  +TIG+++    +++ ++ +K  I+D AG   +  + + +Y+ + G +LVYDV    +F  +  WL E+++         NII ++  NK DL     V   +G+ +AE    ++ ETSA
Sbjct:   18 KVISLGNAEVGKSCIIKRYCEKRFVPKYLATIGIDYGVTKVQVRDREIKVNIFDMAGHPFFYEVRNEFYKDSQGVILVYDVGLRESFDALDSWLTEMKQEMGSQANMENIIFVVCANKVDLTKRRVVDESEGRLWAESRGFHYFETSA 165          
BLAST of FC932452 vs. ExPASy Swiss-Prot
Match: DJ27B_XENLA (DnaJ homolog subfamily C member 27-B OS=Xenopus laevis GN=dnajc27-B PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.051e-16
Identity = 42/161 (26.09%), Postives = 86/161 (53.42%), Query Frame = 1
Query:  250 KPDEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDP--------NIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSA 708
            + D       K++ +G++ VGKS ++ R+ +  F  + ++TIG+++    ++I ++ +K  I+D AG   +  + + +Y+   G +LVYDV +  +F+++  WL E+++   P        NI+  +  NK D      V   +G+ ++E +   + ETSA
Sbjct:    8 RKDSRKPLRIKVISMGNAEVGKSCIIKRYCEKRFVPKYQATIGIDYGVTKVQIKDREIKVNIFDMAGHPFFYEVRNEFYKDTQGVILVYDVGQKESFESLDAWLAEMKQELGPQINIDNLDNIVFAVCANKIDSTKHRCVDESEGRLWSESKGFLYFETSA 168          
BLAST of FC932452 vs. ExPASy Swiss-Prot
Match: RAN_VICFA (GTP-binding nuclear protein Ran/TC4 OS=Vicia faba PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.373e-16
Identity = 48/144 (33.33%), Postives = 79/144 (54.86%), Query Frame = 1
Query:  277 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSA 708
            FKLV++GD G GK+  + R    EF  + + TIGVE        +   ++   WDTAGQE++  +   YY     A++++DVT   T++NV  W R+L    + NI ++L GNK D+++    + +    F  +++L + E SA
Sbjct:   14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKNRQVKAKQ--VTFHRKKNLQYYEISA 154          
BLAST of FC932452 vs. ExPASy Swiss-Prot
Match: RANB1_TOBAC (GTP-binding nuclear protein Ran-B1 OS=Nicotiana tabacum GN=RAN-B1 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.373e-16
Identity = 48/144 (33.33%), Postives = 79/144 (54.86%), Query Frame = 1
Query:  277 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSA 708
            FKLV++GD G GK+  + R    EF  + + TIGVE        +   ++   WDTAGQE++  +   YY     A++++DVT   T++NV  W R+L    + NI ++L GNK D+++    + +    F  +++L + E SA
Sbjct:   14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKNRQVKAKQ--VTFHRKKNLQYYEISA 154          
BLAST of FC932452 vs. ExPASy Swiss-Prot
Match: RANA1_TOBAC (GTP-binding nuclear protein Ran-A1 OS=Nicotiana tabacum GN=RAN-A1 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.373e-16
Identity = 48/144 (33.33%), Postives = 79/144 (54.86%), Query Frame = 1
Query:  277 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSA 708
            FKLV++GD G GK+  + R    EF  + + TIGVE        +   ++   WDTAGQE++  +   YY     A++++DVT   T++NV  W R+L    + NI ++L GNK D+++    + +    F  +++L + E SA
Sbjct:   14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKNRQVKAKQ--VTFHRKKNLQYYEISA 154          
BLAST of FC932452 vs. ExPASy Swiss-Prot
Match: RAN3_ORYSJ (GTP-binding nuclear protein Ran-3 OS=Oryza sativa subsp. japonica GN=RAN3 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.373e-16
Identity = 48/144 (33.33%), Postives = 76/144 (52.78%), Query Frame = 1
Query:  277 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSA 708
            FKL+L+GD G GK+  + R    EF    + TIGVE            V+   WDTAGQE++  +   YY     A++++DVT   T++NV  W +++    D NI ++L GNK D+++    +      F  +++L + E SA
Sbjct:   18 FKLILVGDGGTGKTTFVKRHITGEFEKRYEPTIGVEVRPLDFHTSRGKVRFCCWDTAGQEKFGGLRDGYYIHGHCAIIMFDVTSRLTYKNVPTWHKDICRVCD-NIPIVLCGNKVDMKNRQVKAKM--VTFHRKKNLQYYEISA 158          
BLAST of FC932452 vs. ExPASy Swiss-Prot
Match: RAN3_ORYSI (GTP-binding nuclear protein Ran-3 OS=Oryza sativa subsp. indica GN=RAN3 PE=2 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 1.373e-16
Identity = 48/144 (33.33%), Postives = 76/144 (52.78%), Query Frame = 1
Query:  277 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSA 708
            FKL+L+GD G GK+  + R    EF    + TIGVE            V+   WDTAGQE++  +   YY     A++++DVT   T++NV  W +++    D NI ++L GNK D+++    +      F  +++L + E SA
Sbjct:   18 FKLILVGDGGTGKTTFVKRHITGEFEKRYEPTIGVEVRPLDFHTSRGKVRFCCWDTAGQEKFGGLRDGYYIHGHCAIIMFDVTSRLTYKNVPTWHKDICRVCD-NIPIVLCGNKVDMKNRQVKAKM--VTFHRKKNLQYYEISA 158          
BLAST of FC932452 vs. ExPASy Swiss-Prot
Match: RAN3_ARATH (GTP-binding nuclear protein Ran-3 OS=Arabidopsis thaliana GN=RAN3 PE=1 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 1.373e-16
Identity = 48/144 (33.33%), Postives = 79/144 (54.86%), Query Frame = 1
Query:  277 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSA 708
            FKLV++GD G GK+  + R    EF  + + TIGVE        +   ++   WDTAGQE++  +   YY     A++++DVT   T++NV  W R+L    + NI ++L GNK D+++    + +    F  +++L + E SA
Sbjct:   14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKNRQVKAKQ--VTFHRKKNLQYYEISA 154          
BLAST of FC932452 vs. ExPASy Swiss-Prot
Match: RAN2_SOLLC (GTP-binding nuclear protein Ran2 OS=Solanum lycopersicum GN=RAN2 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.373e-16
Identity = 48/144 (33.33%), Postives = 79/144 (54.86%), Query Frame = 1
Query:  277 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSA 708
            FKLV++GD G GK+  + R    EF  + + TIGVE        +   ++   WDTAGQE++  +   YY     A++++DVT   T++NV  W R+L    + NI ++L GNK D+++    + +    F  +++L + E SA
Sbjct:   14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKNRQVKAKQ--VTFHRKKNLQYYEISA 154          
BLAST of FC932452 vs. ExPASy Swiss-Prot
Match: RAN2_ARATH (GTP-binding nuclear protein Ran-2 OS=Arabidopsis thaliana GN=RAN2 PE=1 SV=3)

HSP 1 Score: 86.6557 bits (213), Expect = 1.373e-16
Identity = 48/144 (33.33%), Postives = 79/144 (54.86%), Query Frame = 1
Query:  277 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSA 708
            FKLV++GD G GK+  + R    EF  + + TIGVE        +   ++   WDTAGQE++  +   YY     A++++DVT   T++NV  W R+L    + NI ++L GNK D+++    + +    F  +++L + E SA
Sbjct:   14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKNRQVKAKQ--VTFHRKKNLQYYEISA 154          
The following BLAST results are available for this feature:
BLAST of FC932452 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DJC27_DANRE1.051e-1628.38DnaJ homolog subfamily C member 27 OS=Danio rerio ... [more]
DJ27B_XENLA1.051e-1626.09DnaJ homolog subfamily C member 27-B OS=Xenopus la... [more]
RAN_VICFA1.373e-1633.33GTP-binding nuclear protein Ran/TC4 OS=Vicia faba ... [more]
RANB1_TOBAC1.373e-1633.33GTP-binding nuclear protein Ran-B1 OS=Nicotiana ta... [more]
RANA1_TOBAC1.373e-1633.33GTP-binding nuclear protein Ran-A1 OS=Nicotiana ta... [more]
RAN3_ORYSJ1.373e-1633.33GTP-binding nuclear protein Ran-3 OS=Oryza sativa ... [more]
RAN3_ORYSI1.373e-1633.33GTP-binding nuclear protein Ran-3 OS=Oryza sativa ... [more]
RAN3_ARATH1.373e-1633.33GTP-binding nuclear protein Ran-3 OS=Arabidopsis t... [more]
RAN2_SOLLC1.373e-1633.33GTP-binding nuclear protein Ran2 OS=Solanum lycope... [more]
RAN2_ARATH1.373e-1633.33GTP-binding nuclear protein Ran-2 OS=Arabidopsis t... [more]

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Properties
Property NameValue
Genbank descriptionC34208G04EF PostHarveN Citrus clementina cDNA clone C34208G04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932452 ID=FC932452; Name=FC932452; organism=Citrus clementina; type=EST; length=713bp
AACCCCAATCCAAATCAAAAACCGCCGAAACTTTTACAGCAAAACAACAA
TATACAAGCTCCTCTTTGTCACCGCTTCTTTAGCAAAATTCACAAGCTTA
TTAGTTATTACTCTTTAAATAACCCCACCCCTCACAAAGAGAGAGAGAGA
GACACTCTCTGTACTTCTCTGTTTCTTTACCAACTTTCTTTGGGATTCCT
TAGTTACAAGTGAACAGTGACGCATACACCTATATAAATGGCGGGTTACA
AGCCTGATGAGGAGTATGATTACCTTTTCAAGTTGGTTTTGATTGGAGAC
TCAGGCGTTGGTAAATCCAACTTGCTTTCGAGGTTTACAAAAAACGAGTT
TAATTTGGAATCAAAGTCTACTATTGGTGTTGAGTTCGCTACCAGGAGTT
TGAGGATTGATAACAAGGTTGTCAAGGCTCAAATTTGGGACACTGCTGGC
CAAGAAAGGTACCGTGCAATTACAAGTGCTTACTACCGGGGTGCCGTTGG
TGCTTTGCTTGTATACGATGTAACACGACATGCTACATTTCAGAATGTTG
GAAGGTGGTTGAGGGAGTTAAGAGAGCACACAGATCCGAACATTATTGTC
ATGCTCATTGGCAATAAGACAGATCTTCGACACCTTGTGGCTGTCTCAAC
TGAGGATGGGAAAGCTTTTGCTGAGCAGGAGTCTCTCTATTTCATGGAGA
CTTCCGCATTGGA
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