FC932452

Overview
NameFC932452
Unique NameFC932452
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length713
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932452 vs. ExPASy Swiss-Prot
Match: RAC7_ORYSJ (Rac-like GTP-binding protein 7 OS=Oryza sativa subsp. japonica GN=RAC7 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.769e-15
Identity = 49/143 (34.27%), Postives = 76/143 (53.15%), Query Frame = 1
Query:  280 KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNV-GRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETS 705
            K V +GD  VGK+ +L  +T N F  +   T+   F+   + +D   V   +WDTAGQE Y  +    YRGA   LL + +   A+++N+  +W+ ELR H  PN+ ++L+G K DLR       ED + F +   L  + T+
Sbjct:    8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENIHKKWIPELR-HYAPNVPIVLVGTKLDLR-------EDKQFFLDHPGLAPISTA 141          
BLAST of FC932452 vs. ExPASy Swiss-Prot
Match: RAC3_ARATH (Rac-like GTP-binding protein ARAC3 OS=Arabidopsis thaliana GN=ARAC3 PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.769e-15
Identity = 48/133 (36.09%), Postives = 72/133 (54.14%), Query Frame = 1
Query:  280 KLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVG-RWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAE 675
            K V +GD  VGK+ LL  +T N F  +   T+   F+   + +D   +   +WDTAGQE Y  +    YRGA   LL + +   A+++NV  +W+ ELR H  P + ++L+G K DLR       +D + FAE
Sbjct:    8 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVI-VDGNTINLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLVSKASYENVSKKWVPELR-HYAPGVPIILVGTKLDLR-------DDKQFFAE 131          
BLAST of FC932452 vs. ExPASy Swiss-Prot
Match: RAS_LENED (Ras-like protein OS=Lentinula edodes PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.535e-15
Identity = 50/145 (34.48%), Postives = 77/145 (53.10%), Query Frame = 1
Query:  277 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRE-LREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSA 708
            +KLV++G  GVGKS L  +F ++ F  E   TI   +  + + ID++V    + DTAGQE Y A+   Y R   G LLVY +T   +F+ +  + ++ LR        V+++ NK DL +   V   +G+  A      F+ETSA
Sbjct:   11 YKLVVVGGGGVGKSALTIQFIQSHFVDEYDPTIEDSYRKQCV-IDDEVALLDVLDTAGQEEYGAMREQYMRTGEGFLLVYSITSRNSFEEISTFHQQILRVKDQDTFPVVVVANKCDLEYERQVGMNEGRDLARHFGCKFVETSA 154          
BLAST of FC932452 vs. ExPASy Swiss-Prot
Match: RAS_CRYNE (Ras-like protein OS=Cryptococcus neoformans GN=RAS1 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.535e-15
Identity = 49/145 (33.79%), Postives = 80/145 (55.17%), Query Frame = 1
Query:  277 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNII-VMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSA 708
            +KLV++G  GVGKS L  +F ++ F  E   TI   +  + + ID +V    + DTAGQE Y A+   Y R   G LLVY +T  ++F+ V  + +++    D +   V+++ NK DL +   V   +G+  A++ +   +ETSA
Sbjct:   10 YKLVVVGGGGVGKSALTIQFIQSHFVDEYDPTIEDSYRKQCI-IDEEVALLDVLDTAGQEEYGAMREQYMRTGEGFLLVYSITSRSSFEEVSTFHQQILRVKDKDYFPVVVVANKCDLEYERQVQPHEGRDLAKRFNAQCIETSA 153          
BLAST of FC932452 vs. ExPASy Swiss-Prot
Match: RASG_DICDI (Ras-like protein rasG OS=Dictyostelium discoideum GN=rasG PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.535e-15
Identity = 50/145 (34.48%), Postives = 76/145 (52.41%), Query Frame = 1
Query:  277 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVML-IGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSA 708
            +KLV++G  GVGKS L  +  +N F  E   TI   +  + + ID +     I DTAGQE Y A+   Y R   G L VY +T  ++F  +  +  ++    D + + M+ +GNK DL     V+T +G+  A+     F+ETSA
Sbjct:    4 YKLVIVGGGGVGKSALTIQLIQNHFIDEYDPTIEDSYR-KQVTIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLCVYSITSRSSFDEIASFREQILRVKDKDRVPMIVVGNKCDLESDRQVTTGEGQDLAKSFGSPFLETSA 147          
BLAST of FC932452 vs. ExPASy Swiss-Prot
Match: RAP2A_PONAB (Ras-related protein Rap-2a OS=Pongo abelii GN=RAP2A PE=2 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 7.535e-15
Identity = 49/146 (33.56%), Postives = 82/146 (56.16%), Query Frame = 1
Query:  277 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRE--LREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSA 708
            +K+V++G  GVGKS L  +F    F  +   TI  +F  + + +D+     +I DTAG E++ ++   Y +   G +LVY +    +FQ++ + +R+  +R      + V+L+GNK DL     VS+ +G+A AE+    FMETSA
Sbjct:    4 YKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDI-KPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSNEGRALAEEWGCPFMETSA 147          
BLAST of FC932452 vs. ExPASy Swiss-Prot
Match: RAP2A_MOUSE (Ras-related protein Rap-2a OS=Mus musculus GN=Rap2a PE=1 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 7.535e-15
Identity = 49/146 (33.56%), Postives = 82/146 (56.16%), Query Frame = 1
Query:  277 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRE--LREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSA 708
            +K+V++G  GVGKS L  +F    F  +   TI  +F  + + +D+     +I DTAG E++ ++   Y +   G +LVY +    +FQ++ + +R+  +R      + V+L+GNK DL     VS+ +G+A AE+    FMETSA
Sbjct:    4 YKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDI-KPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSNEGRALAEEWGCPFMETSA 147          
BLAST of FC932452 vs. ExPASy Swiss-Prot
Match: RAP2A_HUMAN (Ras-related protein Rap-2a OS=Homo sapiens GN=RAP2A PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.535e-15
Identity = 49/146 (33.56%), Postives = 82/146 (56.16%), Query Frame = 1
Query:  277 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRE--LREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSA 708
            +K+V++G  GVGKS L  +F    F  +   TI  +F  + + +D+     +I DTAG E++ ++   Y +   G +LVY +    +FQ++ + +R+  +R      + V+L+GNK DL     VS+ +G+A AE+    FMETSA
Sbjct:    4 YKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDI-KPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSA 147          
BLAST of FC932452 vs. ExPASy Swiss-Prot
Match: RAN_ONCVO (GTP-binding nuclear protein Ran OS=Onchocerca volvulus GN=ran-1 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.535e-15
Identity = 40/118 (33.90%), Postives = 66/118 (55.93%), Query Frame = 1
Query:  277 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLR 630
            FKLVL+GD G GK+  + R    +   +  +T+GVE        +   ++  +WDTAGQE++  +   YY     A++++DVT   T++NV  W R+L    + NI ++L GN  D++
Sbjct:   10 FKLVLVGDGGTGKTTFVKRHLTGDPEKKYVATLGVEVHPLIFHTNRGQIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTARVTYKNVPNWHRDLARVCE-NIPIVLCGNFVDVK 126          
BLAST of FC932452 vs. ExPASy Swiss-Prot
Match: RAS2_PHYPO (Ras-like protein 2 OS=Physarum polycephalum GN=RAS-2 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.841e-15
Identity = 50/145 (34.48%), Postives = 75/145 (51.72%), Query Frame = 1
Query:  277 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVM-LIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSA 708
            +KLV++G  GVGKS L  +  +N F  E   TI   +  + + ID +     I DTAGQE Y A+   Y R   G ++VY +T  ++F  +  +  ++    D + + M L GNK DL     V+T +G+  A      F+ETSA
Sbjct:    6 YKLVIVGGGGVGKSALTIQLIQNHFIDEYDPTIEDSYR-KQVVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFVMVYSITSRSSFDEINAFREQILRVKDKDTVPMVLAGNKCDLASERQVTTNEGQELARAFGCPFVETSA 149          
The following BLAST results are available for this feature:
BLAST of FC932452 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAC7_ORYSJ5.769e-1534.27Rac-like GTP-binding protein 7 OS=Oryza sativa sub... [more]
RAC3_ARATH5.769e-1536.09Rac-like GTP-binding protein ARAC3 OS=Arabidopsis ... [more]
RAS_LENED7.535e-1534.48Ras-like protein OS=Lentinula edodes PE=3 SV=1[more]
RAS_CRYNE7.535e-1533.79Ras-like protein OS=Cryptococcus neoformans GN=RAS... [more]
RASG_DICDI7.535e-1534.48Ras-like protein rasG OS=Dictyostelium discoideum ... [more]
RAP2A_PONAB7.535e-1533.56Ras-related protein Rap-2a OS=Pongo abelii GN=RAP2... [more]
RAP2A_MOUSE7.535e-1533.56Ras-related protein Rap-2a OS=Mus musculus GN=Rap2... [more]
RAP2A_HUMAN7.535e-1533.56Ras-related protein Rap-2a OS=Homo sapiens GN=RAP2... [more]
RAN_ONCVO7.535e-1533.90GTP-binding nuclear protein Ran OS=Onchocerca volv... [more]
RAS2_PHYPO9.841e-1534.48Ras-like protein 2 OS=Physarum polycephalum GN=RAS... [more]

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Properties
Property NameValue
Genbank descriptionC34208G04EF PostHarveN Citrus clementina cDNA clone C34208G04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932452 ID=FC932452; Name=FC932452; organism=Citrus clementina; type=EST; length=713bp
AACCCCAATCCAAATCAAAAACCGCCGAAACTTTTACAGCAAAACAACAA
TATACAAGCTCCTCTTTGTCACCGCTTCTTTAGCAAAATTCACAAGCTTA
TTAGTTATTACTCTTTAAATAACCCCACCCCTCACAAAGAGAGAGAGAGA
GACACTCTCTGTACTTCTCTGTTTCTTTACCAACTTTCTTTGGGATTCCT
TAGTTACAAGTGAACAGTGACGCATACACCTATATAAATGGCGGGTTACA
AGCCTGATGAGGAGTATGATTACCTTTTCAAGTTGGTTTTGATTGGAGAC
TCAGGCGTTGGTAAATCCAACTTGCTTTCGAGGTTTACAAAAAACGAGTT
TAATTTGGAATCAAAGTCTACTATTGGTGTTGAGTTCGCTACCAGGAGTT
TGAGGATTGATAACAAGGTTGTCAAGGCTCAAATTTGGGACACTGCTGGC
CAAGAAAGGTACCGTGCAATTACAAGTGCTTACTACCGGGGTGCCGTTGG
TGCTTTGCTTGTATACGATGTAACACGACATGCTACATTTCAGAATGTTG
GAAGGTGGTTGAGGGAGTTAAGAGAGCACACAGATCCGAACATTATTGTC
ATGCTCATTGGCAATAAGACAGATCTTCGACACCTTGTGGCTGTCTCAAC
TGAGGATGGGAAAGCTTTTGCTGAGCAGGAGTCTCTCTATTTCATGGAGA
CTTCCGCATTGGA
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