FC932452

Overview
NameFC932452
Unique NameFC932452
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length713
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932452 vs. ExPASy Swiss-Prot
Match: YPT1_PHYIN (Ras-like GTP-binding protein YPT1 OS=Phytophthora infestans GN=YPT1 PE=3 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 3.968e-40
Identity = 82/149 (55.03%), Postives = 105/149 (70.47%), Query Frame = 1
Query:  262 EYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSA 708
            EYDYLFKL+LIGDSGVGKS LL RF  + +     STIGV+F  R++ +D K +K QIWDTAGQER+R ITS+YYRGA G ++VYDVT   +F NV +WL E+  +   N+  +L+GNK+DL     VST+  K FAE   + F+ETSA
Sbjct:    4 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLHEIDRYACENVNKLLVGNKSDLTAKRVVSTDAAKEFAESLGIEFLETSA 152          
BLAST of FC932452 vs. ExPASy Swiss-Prot
Match: RAB8B_RAT (Ras-related protein Rab-8B OS=Rattus norvegicus GN=Rab8b PE=1 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 5.182e-40
Identity = 77/148 (52.03%), Postives = 105/148 (70.95%), Query Frame = 1
Query:  265 YDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSA 708
            YDYLFKL+LIGDSGVGK+ LL RF+++ FN    STIG++F  R++ +D K +K QIWDTAGQER+R IT+AYYRGA+G +LVYD+T   +F N+  W+R + EH   ++  M++GNK D+     VS E G+  A    + F+ETSA
Sbjct:    5 YDYLFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGNKCDMNDKRQVSKERGEKLAIDYGIKFLETSA 152          
BLAST of FC932452 vs. ExPASy Swiss-Prot
Match: RAB8B_PONAB (Ras-related protein Rab-8B OS=Pongo abelii GN=RAB8B PE=2 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 5.182e-40
Identity = 77/148 (52.03%), Postives = 105/148 (70.95%), Query Frame = 1
Query:  265 YDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSA 708
            YDYLFKL+LIGDSGVGK+ LL RF+++ FN    STIG++F  R++ +D K +K QIWDTAGQER+R IT+AYYRGA+G +LVYD+T   +F N+  W+R + EH   ++  M++GNK D+     VS E G+  A    + F+ETSA
Sbjct:    5 YDYLFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGNKCDMNDKRQVSKERGEKLAIDYGIKFLETSA 152          
BLAST of FC932452 vs. ExPASy Swiss-Prot
Match: RAB8B_MOUSE (Ras-related protein Rab-8B OS=Mus musculus GN=Rab8b PE=1 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 5.182e-40
Identity = 77/148 (52.03%), Postives = 105/148 (70.95%), Query Frame = 1
Query:  265 YDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSA 708
            YDYLFKL+LIGDSGVGK+ LL RF+++ FN    STIG++F  R++ +D K +K QIWDTAGQER+R IT+AYYRGA+G +LVYD+T   +F N+  W+R + EH   ++  M++GNK D+     VS E G+  A    + F+ETSA
Sbjct:    5 YDYLFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGNKCDMNDKRQVSKERGEKLAIDYGIKFLETSA 152          
BLAST of FC932452 vs. ExPASy Swiss-Prot
Match: RAB8B_HUMAN (Ras-related protein Rab-8B OS=Homo sapiens GN=RAB8B PE=1 SV=2)

HSP 1 Score: 164.466 bits (415), Expect = 5.182e-40
Identity = 77/148 (52.03%), Postives = 105/148 (70.95%), Query Frame = 1
Query:  265 YDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSA 708
            YDYLFKL+LIGDSGVGK+ LL RF+++ FN    STIG++F  R++ +D K +K QIWDTAGQER+R IT+AYYRGA+G +LVYD+T   +F N+  W+R + EH   ++  M++GNK D+     VS E G+  A    + F+ETSA
Sbjct:    5 YDYLFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGNKCDMNDKRQVSKERGEKLAIDYGIKFLETSA 152          
BLAST of FC932452 vs. ExPASy Swiss-Prot
Match: YPTV1_VOLCA (GTP-binding protein yptV1 OS=Volvox carteri GN=YPTV1 PE=3 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 6.768e-40
Identity = 81/149 (54.36%), Postives = 106/149 (71.14%), Query Frame = 1
Query:  262 EYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSA 708
            EYDYLFKL+LIGDSGVGKS LL RF  + +     STIGV+F  R++ +D KV+K QIWDTAGQER+R ITS+YYRGA G ++VYDVT   +F NV +WL E+  +   N+  +L+GNK+DL     V  +  KAFA++  + F+ETSA
Sbjct:    4 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTVELDGKVIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLAEIDRYASENVNKLLVGNKSDLTGKKVVDYQAAKAFADEIGIPFLETSA 152          
BLAST of FC932452 vs. ExPASy Swiss-Prot
Match: RBD2A_ARATH (Ras-related protein RABD2A OS=Arabidopsis thaliana GN=RABD2A PE=1 SV=3)

HSP 1 Score: 164.081 bits (414), Expect = 6.768e-40
Identity = 82/149 (55.03%), Postives = 106/149 (71.14%), Query Frame = 1
Query:  262 EYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSA 708
            EYDYLFKL+LIGDSGVGKS LL RF+ + +     STIGV+F  R++  D K +K QIWDTAGQER+R ITS+YYRGA G ++VYDVT   +F NV +WL E+  +   N+  +L+GNK+DL    A+  E  KAFA++  + FMETSA
Sbjct:    4 EYDYLFKLLLIGDSGVGKSCLLLRFSDDSYVESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDEESFNNVKQWLSEIDRYASDNVNKLLVGNKSDLTENRAIPYETAKAFADEIGIPFMETSA 152          
BLAST of FC932452 vs. ExPASy Swiss-Prot
Match: YPTC1_CHLRE (GTP-binding protein YPTC1 OS=Chlamydomonas reinhardtii GN=YPTC1 PE=3 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 8.839e-40
Identity = 81/149 (54.36%), Postives = 105/149 (70.47%), Query Frame = 1
Query:  262 EYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSA 708
            EYDYLFKL+LIGDSGVGKS LL RF  + +     STIGV+F  R++ +D KV+K QIWDTAGQER+R ITS+YYRGA G ++VYDVT   +F NV +WL E+  +   N+  +L+GNK+DL     V     KAFA++  + F+ETSA
Sbjct:    4 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTVELDGKVIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKSDLTSKKVVEYSVAKAFADEIGIPFLETSA 152          
BLAST of FC932452 vs. ExPASy Swiss-Prot
Match: RAB8A_RAT (Ras-related protein Rab-8A OS=Rattus norvegicus GN=Rab8a PE=2 SV=2)

HSP 1 Score: 163.696 bits (413), Expect = 8.839e-40
Identity = 77/148 (52.03%), Postives = 105/148 (70.95%), Query Frame = 1
Query:  265 YDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSA 708
            YDYLFKL+LIGDSGVGK+ +L RF+++ FN    STIG++F  R++ +D K +K QIWDTAGQER+R IT+AYYRGA+G +LVYD+T   +F N+  W+R + EH   ++  M++GNK D+     VS E G+  A    + FMETSA
Sbjct:    5 YDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSA 152          
BLAST of FC932452 vs. ExPASy Swiss-Prot
Match: RAB8A_PONAB (Ras-related protein Rab-8A OS=Pongo abelii GN=RAB8A PE=2 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 8.839e-40
Identity = 77/148 (52.03%), Postives = 105/148 (70.95%), Query Frame = 1
Query:  265 YDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSA 708
            YDYLFKL+LIGDSGVGK+ +L RF+++ FN    STIG++F  R++ +D K +K QIWDTAGQER+R IT+AYYRGA+G +LVYD+T   +F N+  W+R + EH   ++  M++GNK D+     VS E G+  A    + FMETSA
Sbjct:    5 YDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKRDVNDKRQVSKERGEKLALDYGIKFMETSA 152          
The following BLAST results are available for this feature:
BLAST of FC932452 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
YPT1_PHYIN3.968e-4055.03Ras-like GTP-binding protein YPT1 OS=Phytophthora ... [more]
RAB8B_RAT5.182e-4052.03Ras-related protein Rab-8B OS=Rattus norvegicus GN... [more]
RAB8B_PONAB5.182e-4052.03Ras-related protein Rab-8B OS=Pongo abelii GN=RAB8... [more]
RAB8B_MOUSE5.182e-4052.03Ras-related protein Rab-8B OS=Mus musculus GN=Rab8... [more]
RAB8B_HUMAN5.182e-4052.03Ras-related protein Rab-8B OS=Homo sapiens GN=RAB8... [more]
YPTV1_VOLCA6.768e-4054.36GTP-binding protein yptV1 OS=Volvox carteri GN=YPT... [more]
RBD2A_ARATH6.768e-4055.03Ras-related protein RABD2A OS=Arabidopsis thaliana... [more]
YPTC1_CHLRE8.839e-4054.36GTP-binding protein YPTC1 OS=Chlamydomonas reinhar... [more]
RAB8A_RAT8.839e-4052.03Ras-related protein Rab-8A OS=Rattus norvegicus GN... [more]
RAB8A_PONAB8.839e-4052.03Ras-related protein Rab-8A OS=Pongo abelii GN=RAB8... [more]

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Properties
Property NameValue
Genbank descriptionC34208G04EF PostHarveN Citrus clementina cDNA clone C34208G04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932452 ID=FC932452; Name=FC932452; organism=Citrus clementina; type=EST; length=713bp
AACCCCAATCCAAATCAAAAACCGCCGAAACTTTTACAGCAAAACAACAA
TATACAAGCTCCTCTTTGTCACCGCTTCTTTAGCAAAATTCACAAGCTTA
TTAGTTATTACTCTTTAAATAACCCCACCCCTCACAAAGAGAGAGAGAGA
GACACTCTCTGTACTTCTCTGTTTCTTTACCAACTTTCTTTGGGATTCCT
TAGTTACAAGTGAACAGTGACGCATACACCTATATAAATGGCGGGTTACA
AGCCTGATGAGGAGTATGATTACCTTTTCAAGTTGGTTTTGATTGGAGAC
TCAGGCGTTGGTAAATCCAACTTGCTTTCGAGGTTTACAAAAAACGAGTT
TAATTTGGAATCAAAGTCTACTATTGGTGTTGAGTTCGCTACCAGGAGTT
TGAGGATTGATAACAAGGTTGTCAAGGCTCAAATTTGGGACACTGCTGGC
CAAGAAAGGTACCGTGCAATTACAAGTGCTTACTACCGGGGTGCCGTTGG
TGCTTTGCTTGTATACGATGTAACACGACATGCTACATTTCAGAATGTTG
GAAGGTGGTTGAGGGAGTTAAGAGAGCACACAGATCCGAACATTATTGTC
ATGCTCATTGGCAATAAGACAGATCTTCGACACCTTGTGGCTGTCTCAAC
TGAGGATGGGAAAGCTTTTGCTGAGCAGGAGTCTCTCTATTTCATGGAGA
CTTCCGCATTGGA
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