FC932452

Overview
NameFC932452
Unique NameFC932452
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length713
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC932452_ssr138 microsatellite FC932452_ssr138:138..151. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig777 contig Ccv1_Contig777:11..723. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932452 vs. ExPASy Swiss-Prot
Match: ARA3_ARATH (Ras-related protein ARA-3 OS=Arabidopsis thaliana GN=ARA-3 PE=2 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 3.359e-39
Identity = 78/150 (52.00%), Postives = 105/150 (70.00%), Query Frame = 1
Query:  262 EYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDL-RHLVAVSTEDGKAFAEQESLYFMETSA 708
            +YDYL KL+LIGDSGVGKS LL RF+   F     +TIG++F  R++ +D K +K QIWDTAGQER+R IT+AYYRGA+G LLVYDVT  ++F N+  W+R + +H   N+  +L+GNK D+     AV T  G+A A++  + F ETSA
Sbjct:   11 DYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTAKGQALADEYGIKFFETSA 160          
BLAST of FC932452 vs. ExPASy Swiss-Prot
Match: RAB8A_DICDI (Ras-related protein Rab-8A OS=Dictyostelium discoideum GN=rab8A PE=3 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 5.729e-39
Identity = 76/148 (51.35%), Postives = 105/148 (70.95%), Query Frame = 1
Query:  265 YDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSA 708
            YDYL KL+LIGDSGVGKS LL RF+++ F     +TIG++F  R++ ++ K +K QIWDTAGQER+R IT+AYYRGA+G LLVYDVT   +F N+  W+R + +H   ++  MLIGNK D+     V +  GK+ A++  + F+ETSA
Sbjct:   12 YDYLIKLLLIGDSGVGKSCLLLRFSEDSFTPSFITTIGIDFKIRTIELEGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEKSFGNIRNWIRNIEQHATDSVNKMLIGNKCDMAEKKVVDSSRGKSLADEYGIKFLETSA 159          
BLAST of FC932452 vs. ExPASy Swiss-Prot
Match: RAB2B_DICDI (Ras-related protein Rab-2B OS=Dictyostelium discoideum GN=rab2B PE=3 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 5.729e-39
Identity = 77/148 (52.03%), Postives = 106/148 (71.62%), Query Frame = 1
Query:  265 YDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSA 708
            Y++LFK +++GDS VGKSNLL +F    F   S  TIGVEF +RS+ I++K +K QIWDTAGQE++R+IT AYYRGAV A++VYD+TR  +F+++  WL + R+ +  ++  +LIGNK DL     VST + K FAE+  L F ETSA
Sbjct:   21 YEHLFKYIMVGDSAVGKSNLLLQFVDKRFAPNSDFTIGVEFGSRSININDKQIKLQIWDTAGQEKFRSITRAYYRGAVCAMIVYDITRRDSFESLNSWLTDCRKFSSCDVTTVLIGNKADLEANRQVSTSEAKEFAEKNGLMFFETSA 168          
BLAST of FC932452 vs. ExPASy Swiss-Prot
Match: RAB4B_RAT (Ras-related protein Rab-4B OS=Rattus norvegicus GN=Rab4b PE=2 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 7.483e-39
Identity = 77/151 (50.99%), Postives = 104/151 (68.87%), Query Frame = 1
Query:  259 EEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSAL 711
            E YD+LFK ++IG +G GKS LL +F +N+F  +S  TIGVEF +R + +  K VK QIWDTAGQER+R++T +YYRGA GALLVYD+T   T+ ++  WL + R    PNI+V+L GNK DL     V+  +   FA++  L F+ETSAL
Sbjct:    3 ETYDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSAL 153          
BLAST of FC932452 vs. ExPASy Swiss-Prot
Match: RAB4B_MOUSE (Ras-related protein Rab-4B OS=Mus musculus GN=Rab4b PE=2 SV=2)

HSP 1 Score: 160.614 bits (405), Expect = 7.483e-39
Identity = 77/151 (50.99%), Postives = 104/151 (68.87%), Query Frame = 1
Query:  259 EEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSAL 711
            E YD+LFK ++IG +G GKS LL +F +N+F  +S  TIGVEF +R + +  K VK QIWDTAGQER+R++T +YYRGA GALLVYD+T   T+ ++  WL + R    PNI+V+L GNK DL     V+  +   FA++  L F+ETSAL
Sbjct:    3 ETYDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSAL 153          
BLAST of FC932452 vs. ExPASy Swiss-Prot
Match: RAB4B_HUMAN (Ras-related protein Rab-4B OS=Homo sapiens GN=RAB4B PE=1 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 7.483e-39
Identity = 77/151 (50.99%), Postives = 104/151 (68.87%), Query Frame = 1
Query:  259 EEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSAL 711
            E YD+LFK ++IG +G GKS LL +F +N+F  +S  TIGVEF +R + +  K VK QIWDTAGQER+R++T +YYRGA GALLVYD+T   T+ ++  WL + R    PNI+V+L GNK DL     V+  +   FA++  L F+ETSAL
Sbjct:    3 ETYDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSAL 153          
BLAST of FC932452 vs. ExPASy Swiss-Prot
Match: RAB4B_CANFA (Ras-related protein Rab-4B OS=Canis familiaris GN=RAB4B PE=2 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 7.483e-39
Identity = 77/151 (50.99%), Postives = 104/151 (68.87%), Query Frame = 1
Query:  259 EEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSAL 711
            E YD+LFK ++IG +G GKS LL +F +N+F  +S  TIGVEF +R + +  K VK QIWDTAGQER+R++T +YYRGA GALLVYD+T   T+ ++  WL + R    PNI+V+L GNK DL     V+  +   FA++  L F+ETSAL
Sbjct:    3 ETYDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSAL 153          
BLAST of FC932452 vs. ExPASy Swiss-Prot
Match: RAB1A_LYMST (Ras-related protein Rab-1A OS=Lymnaea stagnalis GN=RAB1A PE=2 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 9.773e-39
Identity = 81/157 (51.59%), Postives = 107/157 (68.15%), Query Frame = 1
Query:  238 MAGYKPDEEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSA 708
            M+   PD  YDYLFKL+LIGDSGVGKS LL RF  + +     STIGV+F  R++ +D K +K QIWDTAGQER+R ITS+YYRGA G ++VYDVT   +F NV +WL+E+  +   N+  +L+GNK+DL     V     K +A+Q  + F+ETSA
Sbjct:    1 MSTMNPD--YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDFTTAKEYADQLGIPFLETSA 155          
BLAST of FC932452 vs. ExPASy Swiss-Prot
Match: RAB1A_PIG (Ras-related protein Rab-1A OS=Sus scrofa GN=RAB1A PE=2 SV=3)

HSP 1 Score: 159.844 bits (403), Expect = 1.276e-38
Identity = 79/149 (53.02%), Postives = 102/149 (68.46%), Query Frame = 1
Query:  262 EYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSA 708
            EYDYLFKL+LIGDSGVGKS LL RF  + +     STIGV+F  R++ +D K +K QIWDTAGQER+R ITS+YYRGA G ++VYDVT   +F NV +WL+E+  +   N+  +L+GNK DL     V     K FA+   + F+ETSA
Sbjct:    7 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQGSFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSA 155          
BLAST of FC932452 vs. ExPASy Swiss-Prot
Match: RAB1_DISOM (Ras-related protein ORAB-1 OS=Discopyge ommata PE=2 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.667e-38
Identity = 79/149 (53.02%), Postives = 102/149 (68.46%), Query Frame = 1
Query:  262 EYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRSLRIDNKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKAFAEQESLYFMETSA 708
            EYDYLFKL+LIGDSGVGKS LL RF  + +     STIGV+F  R++ +D K +K QIWDTAGQER+R ITS+YYRGA G ++VYDVT   +F NV +WL+E+  +   N+  +L+GNK DL     V     K FA+   + F+ETSA
Sbjct:    4 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSA 152          
The following BLAST results are available for this feature:
BLAST of FC932452 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ARA3_ARATH3.359e-3952.00Ras-related protein ARA-3 OS=Arabidopsis thaliana ... [more]
RAB8A_DICDI5.729e-3951.35Ras-related protein Rab-8A OS=Dictyostelium discoi... [more]
RAB2B_DICDI5.729e-3952.03Ras-related protein Rab-2B OS=Dictyostelium discoi... [more]
RAB4B_RAT7.483e-3950.99Ras-related protein Rab-4B OS=Rattus norvegicus GN... [more]
RAB4B_MOUSE7.483e-3950.99Ras-related protein Rab-4B OS=Mus musculus GN=Rab4... [more]
RAB4B_HUMAN7.483e-3950.99Ras-related protein Rab-4B OS=Homo sapiens GN=RAB4... [more]
RAB4B_CANFA7.483e-3950.99Ras-related protein Rab-4B OS=Canis familiaris GN=... [more]
RAB1A_LYMST9.773e-3951.59Ras-related protein Rab-1A OS=Lymnaea stagnalis GN... [more]
RAB1A_PIG1.276e-3853.02Ras-related protein Rab-1A OS=Sus scrofa GN=RAB1A ... [more]
RAB1_DISOM1.667e-3853.02Ras-related protein ORAB-1 OS=Discopyge ommata PE=... [more]

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Properties
Property NameValue
Genbank descriptionC34208G04EF PostHarveN Citrus clementina cDNA clone C34208G04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932452 ID=FC932452; Name=FC932452; organism=Citrus clementina; type=EST; length=713bp
AACCCCAATCCAAATCAAAAACCGCCGAAACTTTTACAGCAAAACAACAA
TATACAAGCTCCTCTTTGTCACCGCTTCTTTAGCAAAATTCACAAGCTTA
TTAGTTATTACTCTTTAAATAACCCCACCCCTCACAAAGAGAGAGAGAGA
GACACTCTCTGTACTTCTCTGTTTCTTTACCAACTTTCTTTGGGATTCCT
TAGTTACAAGTGAACAGTGACGCATACACCTATATAAATGGCGGGTTACA
AGCCTGATGAGGAGTATGATTACCTTTTCAAGTTGGTTTTGATTGGAGAC
TCAGGCGTTGGTAAATCCAACTTGCTTTCGAGGTTTACAAAAAACGAGTT
TAATTTGGAATCAAAGTCTACTATTGGTGTTGAGTTCGCTACCAGGAGTT
TGAGGATTGATAACAAGGTTGTCAAGGCTCAAATTTGGGACACTGCTGGC
CAAGAAAGGTACCGTGCAATTACAAGTGCTTACTACCGGGGTGCCGTTGG
TGCTTTGCTTGTATACGATGTAACACGACATGCTACATTTCAGAATGTTG
GAAGGTGGTTGAGGGAGTTAAGAGAGCACACAGATCCGAACATTATTGTC
ATGCTCATTGGCAATAAGACAGATCTTCGACACCTTGTGGCTGTCTCAAC
TGAGGATGGGAAAGCTTTTGCTGAGCAGGAGTCTCTCTATTTCATGGAGA
CTTCCGCATTGGA
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