FC932456

Overview
NameFC932456
Unique NameFC932456
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length750
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932456 vs. ExPASy Swiss-Prot
Match: CAPP_PSEHT (Phosphoenolpyruvate carboxylase OS=Pseudoalteromonas haloplanktis (strain TAC 125) GN=ppc PE=3 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 1.080e-46
Identity = 86/200 (43.00%), Postives = 124/200 (62.00%), Query Frame = 1
Query:    1 KFGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFNEATPQAELGYLNIGSRPTRRKSSTGIGHLRAIPWVFAWTQTRFVLPAWLGIGAGLKGVCDMGNTEDWKEMYKEWPFFQSTIDLIEMVLGKADTHIAKRYDEVLVSESRQELGAELRRELLTTEKFVLVVSGHEKL 600
            KFGLP  A++ L IY  AVL + + PP  P+ + WR +M  IS+ SC++YR+ V  +  F+ YF  ATP+ EL  L +GSRP +R  + G+  LRAIPW+FAW+Q R +LPAWLG   GL+        E  +EM  +WPFF+S ++++EMV  KAD+ +++ YD  LV +  + LG  LR+EL      V  +S  + L
Sbjct:  621 KFGLPDVALQSLNIYAGAVLQSNLLPPPEPKPQ-WREVMALISEESCEHYRNVVRHDENFVPYFRMATPELELSKLPLGSRPAKRNPTGGVESLRAIPWIFAWSQNRLMLPAWLGALTGLQAALAKYGVETLQEMSLQWPFFRSRLEMLEMVFSKADSWLSEHYDNALVEDMYKPLGVTLRKELAEAISLVQSLSPQKSL 819          

HSP 2 Score: 32.7278 bits (73), Expect = 1.080e-46
Identity = 13/37 (35.14%), Postives = 23/37 (62.16%), Query Frame = 3
Query:  618 LRRLIESRLPYLNPMNMLXVEILKRLRQDDDNHNSEM 728
            ++  I  R PY +P+N+L VE+L+R R  D+    ++
Sbjct:  826 IKESIALRNPYTDPLNVLQVELLRRARSSDNGSEGDI 862          
BLAST of FC932456 vs. ExPASy Swiss-Prot
Match: CAPP_VIBVY (Phosphoenolpyruvate carboxylase OS=Vibrio vulnificus (strain YJ016) GN=ppc PE=3 SV=2)

HSP 1 Score: 186.422 bits (472), Expect = 1.408e-46
Identity = 90/203 (44.33%), Postives = 132/203 (65.02%), Query Frame = 1
Query:    1 KFGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFNEATPQAELGYLNIGSRPTRRKSSTGIGHLRAIPWVFAWTQTRFVLPAWLGIGAGLKGVCDMGNTEDWKEMYKEWPFFQSTIDLIEMVLGKADTHIAKRYDEVLVSESRQELGAELRRELLTTEKFVLVVSGHEKLSEN 609
            K GLP  AV    +Y +A+L A + PP  P++E WR+LME +S++SC+ YRS V   P+F+ YF +ATP+ ELG L +GSRP +R  + G+  LRAIPW+F+W+Q R +LPAWLG G  ++   D G+    +EM +EWPFF + + ++EMV  K ++ I++ YDE L  +S   LG  LR +L +  K VL V  +E L ++
Sbjct:  618 KLGLPDVAVNSFNMYASAILEANLLPPPEPKQE-WRDLMEVLSQVSCEAYRSVVRGEPDFVPYFRQATPELELGKLPLGSRPAKRNPNGGVESLRAIPWIFSWSQNRLLLPAWLGAGEAIQYSIDKGHQALLEEMCREWPFFSTRLGMLEMVYLKCNSEISRYYDERLADKSLLPLGDRLRDQLQSDIKAVLNVENNENLMQS 819          
BLAST of FC932456 vs. ExPASy Swiss-Prot
Match: CAPP_VIBVU (Phosphoenolpyruvate carboxylase OS=Vibrio vulnificus GN=ppc PE=3 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.408e-46
Identity = 90/203 (44.33%), Postives = 132/203 (65.02%), Query Frame = 1
Query:    1 KFGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFNEATPQAELGYLNIGSRPTRRKSSTGIGHLRAIPWVFAWTQTRFVLPAWLGIGAGLKGVCDMGNTEDWKEMYKEWPFFQSTIDLIEMVLGKADTHIAKRYDEVLVSESRQELGAELRRELLTTEKFVLVVSGHEKLSEN 609
            K GLP  AV    +Y +A+L A + PP  P++E WR+LME +S++SC+ YRS V   P+F+ YF +ATP+ ELG L +GSRP +R  + G+  LRAIPW+F+W+Q R +LPAWLG G  ++   D G+    +EM +EWPFF + + ++EMV  K ++ I++ YDE L  +S   LG  LR +L +  K VL V  +E L ++
Sbjct:  618 KLGLPDVAVNSFNMYASAILEANLLPPPEPKQE-WRDLMEVLSQVSCEAYRSVVRGEPDFVPYFRQATPELELGKLPLGSRPAKRNPNGGVESLRAIPWIFSWSQNRLLLPAWLGAGEAIQYSIDKGHQALLEEMCREWPFFSTRLGMLEMVYLKCNSEISRYYDERLADKSLLPLGDRLRDQLQSDIKAVLNVENNENLMQS 819          
BLAST of FC932456 vs. ExPASy Swiss-Prot
Match: CAPP_VIBSL (Phosphoenolpyruvate carboxylase OS=Vibrio splendidus (strain LGP32) GN=ppc PE=3 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.408e-46
Identity = 91/203 (44.83%), Postives = 129/203 (63.55%), Query Frame = 1
Query:    1 KFGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFNEATPQAELGYLNIGSRPTRRKSSTGIGHLRAIPWVFAWTQTRFVLPAWLGIGAGLKGVCDMGNTEDWKEMYKEWPFFQSTIDLIEMVLGKADTHIAKRYDEVLVSESRQELGAELRRELLTTEKFVLVVSGHEKLSEN 609
            K GLP  AV    +Y +A+L A + PP  P++E WR+LME +S++SC+ YR+ V    +F+ YF +ATP+ ELG L +GSRP +R  + G+  LRAIPW+F+W+Q R VLPAWLG G  ++   D G+    +EM +EWPFF + + ++EMV  K +  IAK YD+ LV E    LG  LR +L    K VL V  +E L ++
Sbjct:  617 KLGLPDVAVNSFNLYASAILEANLLPPPEPKQE-WRDLMEVLSEVSCEAYRNVVRGEEKFVPYFRQATPELELGKLPLGSRPAKRNPNGGVESLRAIPWIFSWSQNRLVLPAWLGAGEAIQYSVDQGHQALLEEMCREWPFFSTRLGMLEMVYSKCNMEIAKYYDQRLVDEELLPLGELLREQLQKDIKAVLNVENNENLMQS 818          
BLAST of FC932456 vs. ExPASy Swiss-Prot
Match: CAPP_ERWT9 (Phosphoenolpyruvate carboxylase OS=Erwinia tasmaniensis (strain DSM 17950 / Et1/99) GN=ppc PE=3 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.408e-46
Identity = 89/200 (44.50%), Postives = 130/200 (65.00%), Query Frame = 1
Query:    1 KFGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFNEATPQAELGYLNIGSRPTRRKSSTGIGHLRAIPWVFAWTQTRFVLPAWLGIGAGLKGVCDMGNTEDWKEMYKEWPFFQSTIDLIEMVLGKADTHIAKRYDEVLVSESRQELGAELRRELLTTEKFVLVVSGHEKL 600
            K+GLP+  +  L +YT A+L A + PP  P+ E W  +ME +S +SC+ YR  V E+ EF+ YF  ATP+ EL  L +GSRP +R+ + G+  LRAIPW+FAWTQ R +LPAWLG GA L+ V + G+ +  + M ++WPFF + + ++EMV  KAD  +A+ YD+ LV +S   LG +LR +L +  K VL ++    L
Sbjct:  620 KYGLPEVTISSLSLYTGAILEANLLPPPEPKTE-WIGIMERLSAVSCKMYRGYVREHAEFVPYFRSATPEQELAKLPLGSRPAKRRPTGGVESLRAIPWIFAWTQNRLMLPAWLGAGAALQQVMEDGHQDQLEAMCRDWPFFSTRLGMLEMVFSKADLWLAEYYDQRLVDKSLWPLGKQLRDQLESDIKAVLTIANDAHL 818          
BLAST of FC932456 vs. ExPASy Swiss-Prot
Match: CAPP_ECO81 (Phosphoenolpyruvate carboxylase OS=Escherichia coli O81 (strain ED1a) GN=ppc PE=3 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.408e-46
Identity = 91/200 (45.50%), Postives = 127/200 (63.50%), Query Frame = 1
Query:    1 KFGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFNEATPQAELGYLNIGSRPTRRKSSTGIGHLRAIPWVFAWTQTRFVLPAWLGIGAGLKGVCDMGNTEDWKEMYKEWPFFQSTIDLIEMVLGKADTHIAKRYDEVLVSESRQELGAELRRELLTTEKFVLVVSGHEKL 600
            K+GLP+  V  L +YT A+L A + PP  P+E  WR +M+E+S ISC  YR  V EN +F+ YF  ATP+ ELG L +GSRP +R+ + G+  LRAIPW+FAWTQ R +LPAWLG G  L+ V + G   + + M ++WPFF + + ++EMV  KAD  +A+ YD+ LV ++   LG ELR       K VL ++    L
Sbjct:  620 KYGLPEITVSSLSLYTGAILEANLLPPPEPKES-WRCIMDELSVISCDVYRGYVRENKDFVPYFRSATPEQELGKLPLGSRPAKRRPTGGVESLRAIPWIFAWTQNRLMLPAWLGAGTALQKVVEDGKQSELEAMCRDWPFFSTRLGMLEMVFAKADLWLAEYYDQRLVDKALWPLGKELRNLQEEDIKVVLAIANDSHL 818          
BLAST of FC932456 vs. ExPASy Swiss-Prot
Match: CAPP_PSEU5 (Phosphoenolpyruvate carboxylase OS=Pseudomonas stutzeri (strain A1501) GN=ppc PE=3 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 2.402e-46
Identity = 97/204 (47.55%), Postives = 125/204 (61.27%), Query Frame = 1
Query:    1 KFGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFNEATPQAELGYLNIGSRPTRRKSSTGIGHLRAIPWVFAWTQTRFVLPAWLGIGAGLKGVCDMGNTEDWKEMYKEWPFFQSTIDLIEMVLGKADTHIAKRYDEVLVSESRQELGAELRRELLTTEKFVLVVSGHEKLSENT 612
            KFGLP  A + L +Y  AVL AT+ PP PP E  WR  M+ ++      YR  V E+P F+ YF +ATP+ ELG L +GSRP +R+   G+  LRAIPW+FAWTQTR +LPAWLG    L G    G  E   EM   WPFF + ID++EMVL KAD  IA+RYDE LV      LG++LR  L    + VL ++G   L +++
Sbjct:  620 KFGLPDIAEQNLNLYLAAVLEATLLPPPPP-EPGWRETMDRLAAEGVAAYRGVVREHPLFVDYFRQATPELELGRLPLGSRPAKRREG-GVESLRAIPWIFAWTQTRLMLPAWLGWEQALHGALQRGEGERLAEMRARWPFFSTRIDMLEMVLAKADADIARRYDERLVQPELLSLGSDLRDRLSQVIEAVLSLTGQSDLLDHS 821          
BLAST of FC932456 vs. ExPASy Swiss-Prot
Match: CAPP2_SOYBN (Phosphoenolpyruvate carboxylase OS=Glycine max GN=PPC1 PE=2 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 2.402e-46
Identity = 95/203 (46.80%), Postives = 128/203 (63.05%), Query Frame = 1
Query:    4 FGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFNEATPQAELGYLNIGSRPTRRKSSTGIGHLRAIPWVFAWTQTRFVLPAWLGIGAGLKGVCD--MGNTEDWKEMYKEWPFFQSTIDLIEMVLGKADTHIAKRYDEVLVSESRQELGAELRRELLTTEKFVLVVSGHEKLSE 606
            FG      R L+ +T A L   M PP  P+ E WR LM++++ I+ + YRS V++ P F+ YF  ATP+ E G +NIGSRP +R+ S GI  LRAIPW+FAWTQTRF LP WLG GA  K V +  + N    +EMY +WPFF+ T+DL+EMV  K D  IA   D +LVS+     G +LR +   T K +L V+GH+++ E
Sbjct:  677 FGEQHLCFRTLQRFTAATLEHGMHPPISPKPE-WRALMDQMAVIATEEYRSIVFKEPRFVEYFRLATPELEYGRMNIGSRPAKRRPSGGIETLRAIPWIFAWTQTRFHLPVWLGFGAAFKKVIEENVKNLNMLQEMYNQWPFFRVTLDLVEMVFAKGDPKIAALNDRLLVSKDLWPFGDQLRNKYEETRKLLLQVAGHKEILE 878          
BLAST of FC932456 vs. ExPASy Swiss-Prot
Match: CAPP_SHIBS (Phosphoenolpyruvate carboxylase OS=Shigella boydii serotype 4 (strain Sb227) GN=ppc PE=3 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 3.137e-46
Identity = 90/200 (45.00%), Postives = 126/200 (63.00%), Query Frame = 1
Query:    1 KFGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFNEATPQAELGYLNIGSRPTRRKSSTGIGHLRAIPWVFAWTQTRFVLPAWLGIGAGLKGVCDMGNTEDWKEMYKEWPFFQSTIDLIEMVLGKADTHIAKRYDEVLVSESRQELGAELRRELLTTEKFVLVVSGHEKL 600
            K+GLP+  V  L +YT A+L A + PP  P+E  WR +M+E+S ISC  YR  V EN +F+ Y   ATP+ ELG L +GSRP +R+ + G+  LRAIPW+FAWTQ R +LPAWLG G  L+ V + G   + + M ++WPFF + + ++EMV  KAD  +A+ YD+ LV ++   LG ELR       K VL ++    L
Sbjct:  620 KYGLPEITVSSLSLYTGAILEANLLPPPEPKES-WRRIMDELSVISCDVYRGYVRENKDFVPYLRSATPEQELGKLPLGSRPAKRRPTGGVESLRAIPWIFAWTQNRLMLPAWLGAGTALQKVVEDGKQSELEAMCRDWPFFSTRLGMLEMVFAKADLWLAEYYDQRLVDKALWPLGKELRNLQEEDIKVVLAIANDSHL 818          
BLAST of FC932456 vs. ExPASy Swiss-Prot
Match: CAPP_PSEPF (Phosphoenolpyruvate carboxylase OS=Pseudomonas fluorescens (strain Pf0-1) GN=ppc PE=3 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 3.137e-46
Identity = 97/200 (48.50%), Postives = 127/200 (63.50%), Query Frame = 1
Query:    1 KFGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFNEATPQAELGYLNIGSRPTRRKSSTGIGHLRAIPWVFAWTQTRFVLPAWLGIGAGLKGVCDMGNTEDWKEMYKEWPFFQSTIDLIEMVLGKADTHIAKRYDEVLVSESRQELGAELRRELLTTEKFVLVVSGHEKL 600
            KFGLP  A + L +Y  AVL AT+ PP PP  E WR+LM+E++      YR+ V ENP+F+ YF ++TP+ ELG L +GSRP +R++  GI  LRAIPW+F WTQTR +LPAWLG    L    + G  E   +M ++WPFF++ ID++EMVL KAD  IA  YDE LV      LGA LR  L      VL ++G  +L
Sbjct:  617 KFGLPDIAEQNLNLYLAAVLEATLLPPPPPTPE-WRHLMDELAADGVAAYRAVVRENPQFVEYFRQSTPEQELGRLPLGSRPAKRRAG-GIESLRAIPWIFGWTQTRLMLPAWLGWETALSKALERGEGELLGQMREQWPFFRTRIDMLEMVLAKADADIALSYDERLVEPDLLPLGAHLRDLLSQACSVVLGLTGQSQL 814          
The following BLAST results are available for this feature:
BLAST of FC932456 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 229
Match NameE-valueIdentityDescription
CAPP_PSEHT1.080e-4643.00Phosphoenolpyruvate carboxylase OS=Pseudoalteromon... [more]
CAPP_VIBVY1.408e-4644.33Phosphoenolpyruvate carboxylase OS=Vibrio vulnific... [more]
CAPP_VIBVU1.408e-4644.33Phosphoenolpyruvate carboxylase OS=Vibrio vulnific... [more]
CAPP_VIBSL1.408e-4644.83Phosphoenolpyruvate carboxylase OS=Vibrio splendid... [more]
CAPP_ERWT91.408e-4644.50Phosphoenolpyruvate carboxylase OS=Erwinia tasmani... [more]
CAPP_ECO811.408e-4645.50Phosphoenolpyruvate carboxylase OS=Escherichia col... [more]
CAPP_PSEU52.402e-4647.55Phosphoenolpyruvate carboxylase OS=Pseudomonas stu... [more]
CAPP2_SOYBN2.402e-4646.80Phosphoenolpyruvate carboxylase OS=Glycine max GN=... [more]
CAPP_SHIBS3.137e-4645.00Phosphoenolpyruvate carboxylase OS=Shigella boydii... [more]
CAPP_PSEPF3.137e-4648.50Phosphoenolpyruvate carboxylase OS=Pseudomonas flu... [more]

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Properties
Property NameValue
Genbank descriptionC34208G08EF PostHarveN Citrus clementina cDNA clone C34208G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932456 ID=FC932456; Name=FC932456; organism=Citrus clementina; type=EST; length=750bp
AAGTTTGGGTTGCCACAGACAGCTGTTAGACAGCTAGAGATATACACAAC
TGCTGTGCTGCTTGCAACCATGCGACCTCCTCAACCTCCTCGAGAAGAAA
AATGGCGTAATCTCATGGAGGAGATCTCAAAAATTAGTTGCCAGAATTAC
CGGAGCACAGTCTATGAAAACCCAGAATTCCTTGCCTACTTCAACGAGGC
TACACCCCAGGCTGAACTAGGGTACCTTAATATAGGAAGCCGCCCCACAA
GAAGAAAGAGCTCAACAGGAATTGGCCATCTTCGAGCCATTCCATGGGTA
TTTGCATGGACCCAGACCAGGTTTGTCCTTCCAGCTTGGCTTGGAATCGG
AGCAGGGCTGAAGGGTGTTTGTGACATGGGAAATACTGAAGACTGGAAAG
AAATGTATAAAGAATGGCCCTTTTTCCAGTCTACCATAGATCTTATAGAG
ATGGTTTTAGGGAAGGCAGACACTCATATAGCCAAGCGCTATGATGAAGT
CCTTGTTTCAGAGAGTAGGCAAGAGCTTGGTGCTGAGCTAAGGAGGGAGC
TCTTAACAACTGAGAAGTTCGTACTTGTGGTTAGTGGGCATGAGAAGCTA
TCTGAGAATACCACAGTTTGAGGAGGCTGATTGAGAGCAGACTCCCATAT
CTCAATCCTATGAATATGTTGCANGTGGAGATACTGAAGAGATTGAGACA
GGATGATGATAACCATAACTCAGAGATGCATTGCTCATCACTATAAATGG
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