FC932456

Overview
NameFC932456
Unique NameFC932456
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length750
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932456 vs. ExPASy Swiss-Prot
Match: CAPP_ALCBS (Phosphoenolpyruvate carboxylase OS=Alcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM 11573) GN=ppc PE=3 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 4.060e-46
Identity = 95/209 (45.45%), Postives = 118/209 (56.46%), Query Frame = 1
Query:    1 KFGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFNEATPQAELGYLNIGSRPTRRKSSTGIGHLRAIPWVFAWTQTRFVLPAWLGIGAGLKGV-CDMGNTEDWKEMYKEWPFFQSTIDLIEMVLGKADTHIAKRYDEVLVSE--SRQELGAELRRELLTTEKFVLVVSGHEKLSENTTV 618
            K+G P  AV  LE Y  A L AT+ PPQ  R E WR  M+ ++  S   YR  V + PE + Y    TP+ EL  L +GSRP RRKS  GI  LRAIPWVFAWTQ R +LPAWLG GA L+    D       +EM  EWPFFQ  +D++EMVL K+D  +A  Y+E L  +      LG  LR  L  T   +  ++G E L +N  V
Sbjct:  627 KYGRPSVAVFNLEQYVAATLEATLLPPQAARPE-WRQQMQALTDTSVAGYRGVVRDEPELVRYLRTVTPETELSRLALGSRPARRKSDQGISSLRAIPWVFAWTQIRLMLPAWLGTGAALEDAQNDAAQHAMVREMASEWPFFQGVVDMLEMVLAKSDLRVAAWYEERLAGDDPGLMRLGEVLRERLTATVSALSALTGREDLLDNNPV 834          

HSP 2 Score: 31.5722 bits (70), Expect = 4.060e-46
Identity = 14/36 (38.89%), Postives = 22/36 (61.11%), Query Frame = 3
Query:  618 LRRLIESRLPYLNPMNMLXVEILKRLRQDDDNHNSE 725
            +R  I  R PY +P+++L  E++ RLRQ D +   E
Sbjct:  835 MRWSIRVRDPYTDPLHLLQAELMARLRQQDGDETLE 870          
BLAST of FC932456 vs. ExPASy Swiss-Prot
Match: CAPP_VIBFM (Phosphoenolpyruvate carboxylase OS=Vibrio fischeri (strain MJ11) GN=ppc PE=3 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 4.097e-46
Identity = 89/202 (44.06%), Postives = 130/202 (64.36%), Query Frame = 1
Query:    1 KFGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFNEATPQAELGYLNIGSRPTRRKSSTGIGHLRAIPWVFAWTQTRFVLPAWLGIGAGLKGVCDMGNTEDWKEMYKEWPFFQSTIDLIEMVLGKADTHIAKRYDEVLVSESRQELGAELRRELLTTEKFVLVVSGHEKLSE 606
            K GLP+ AV    +Y +A+L A + PP  P++E WR+LME +S++SC+ YR+ V    +F+ YF  ATP+ ELG L +GSRP +R  + G+  LRAIPW+F+W+Q R VLPAWLG G  ++   D G+ E  +EM +EWPFF + + ++EMV  K +  +++ YD+ L  +S   LG  LR +L T  K VL V  ++ L E
Sbjct:  617 KLGLPEVAVNSFNLYASAILEANLLPPPEPKQE-WRDLMEVLSEVSCEAYRNVVRGEKDFVPYFRAATPELELGKLPLGSRPAKRNPNGGVESLRAIPWIFSWSQNRLVLPAWLGAGEAIQYSIDKGHQELLEEMCREWPFFSTRLGMLEMVYTKCNPQMSEYYDQRLTDKSLWPLGERLRNQLQTDIKAVLNVENNDHLME 817          
BLAST of FC932456 vs. ExPASy Swiss-Prot
Match: CAPP_PSEPK (Phosphoenolpyruvate carboxylase OS=Pseudomonas putida (strain KT2440) GN=ppc PE=3 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 4.097e-46
Identity = 96/200 (48.00%), Postives = 129/200 (64.50%), Query Frame = 1
Query:    1 KFGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFNEATPQAELGYLNIGSRPTRRKSSTGIGHLRAIPWVFAWTQTRFVLPAWLGIGAGLKGVCDMGNTEDWKEMYKEWPFFQSTIDLIEMVLGKADTHIAKRYDEVLVSESRQELGAELRRELLTTEKFVLVVSGHEKL 600
            KFGLP  A + L +Y  AVL AT+ PP PP +  WR +M++++    Q YRS V ENP+F+ YF ++TP+ ELG L +GSRP +R++  GI  LRAIPW+F WTQTR +LPAWLG    L      G  E   +M ++WPFF++ ID++EMVL KAD  IA+ YDE LV    + LGA LR  L  + + VL ++G   L
Sbjct:  616 KFGLPGIAEQNLNLYLAAVLEATLLPPPPP-QPAWREVMDQLAADGVQAYRSVVRENPDFVEYFRQSTPEQELGRLPLGSRPAKRRAG-GIESLRAIPWIFGWTQTRLMLPAWLGWETALTNALARGQGELLAQMREQWPFFRTRIDMLEMVLAKADAQIAEAYDERLVQPHLRPLGAHLRDLLSQSCQVVLGLTGQPVL 813          
BLAST of FC932456 vs. ExPASy Swiss-Prot
Match: CAPP_PSEP1 (Phosphoenolpyruvate carboxylase OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=ppc PE=3 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 4.097e-46
Identity = 96/200 (48.00%), Postives = 129/200 (64.50%), Query Frame = 1
Query:    1 KFGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFNEATPQAELGYLNIGSRPTRRKSSTGIGHLRAIPWVFAWTQTRFVLPAWLGIGAGLKGVCDMGNTEDWKEMYKEWPFFQSTIDLIEMVLGKADTHIAKRYDEVLVSESRQELGAELRRELLTTEKFVLVVSGHEKL 600
            KFGLP  A + L +Y  AVL AT+ PP PP +  WR +M++++    Q YRS V ENP+F+ YF ++TP+ ELG L +GSRP +R++  GI  LRAIPW+F WTQTR +LPAWLG    L      G  E   +M ++WPFF++ ID++EMVL KAD  IA+ YDE LV    + LGA LR  L  + + VL ++G   L
Sbjct:  616 KFGLPGIAEQNLNLYLAAVLEATLLPPPPP-QPAWREVMDQLAADGVQAYRSVVRENPDFVEYFRQSTPEQELGRLPLGSRPAKRRAG-GIESLRAIPWIFGWTQTRLMLPAWLGWETALTNALARGQGELLAQMREQWPFFRTRIDMLEMVLAKADAQIAEAYDERLVQPHLRPLGAHLRDLLSQSCQVVLGLTGQPVL 813          
BLAST of FC932456 vs. ExPASy Swiss-Prot
Match: CAPP_PHAVU (Phosphoenolpyruvate carboxylase OS=Phaseolus vulgaris PE=2 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 4.097e-46
Identity = 94/204 (46.08%), Postives = 127/204 (62.25%), Query Frame = 1
Query:    4 FGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFNEATPQAELGYLNIGSRPTRRKSSTGIGHLRAIPWVFAWTQTRFVLPAWLGIGAGLKGVCDMG---NTEDWKEMYKEWPFFQSTIDLIEMVLGKADTHIAKRYDEVLVSESRQELGAELRRELLTTEKFVLVVSGHEKLSE 606
            FG      R L+ +T A L   M PP  P+ E WR +M++++ I+ + YRS V++ P F+ YF  ATP+ E G +NIGSRP +R+ S GI  LRAIPW+FAWTQTRF LP WLG GA  K V D     N    +EMY +WPFF+ T+DL+EMV  K D  I    D +LVS+     G +LR +   T+K +L V+GH+++ E
Sbjct:  677 FGEQHLCFRTLQRFTAATLEHGMNPPISPKPE-WRAMMDQMAVIATEEYRSIVFKEPRFVEYFRLATPELEYGRMNIGSRPAKRRPSGGIETLRAIPWIFAWTQTRFHLPVWLGFGAAFKQVLDKNAKKNLSMLQEMYNQWPFFRVTLDLVEMVFAKGDPKIGALNDRLLVSKDLWPFGDQLRNKYEETKKLLLQVAGHKEILE 879          
BLAST of FC932456 vs. ExPASy Swiss-Prot
Match: CAPP_PSEMY (Phosphoenolpyruvate carboxylase OS=Pseudomonas mendocina (strain ymp) GN=ppc PE=3 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 5.350e-46
Identity = 96/200 (48.00%), Postives = 128/200 (64.00%), Query Frame = 1
Query:    1 KFGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFNEATPQAELGYLNIGSRPTRRKSSTGIGHLRAIPWVFAWTQTRFVLPAWLGIGAGLKGVCDMGNTEDWKEMYKEWPFFQSTIDLIEMVLGKADTHIAKRYDEVLVSESRQELGAELRRELLTTEKFVLVVSGHEKL 600
            KFGLP  A + L +Y  AVL AT+ PP  P E  WR +M+ ++ +  + YR  V E+P+F+AYF +ATP+ ELG L +GSRP +R+   G+  LRAIPW+FAWTQTR +LPAWLG    L      G  E  K M ++WPFF++ ID++EMVL KAD  IA  YD+ LV  + Q LGA+LR  L      VL ++G  +L
Sbjct:  619 KFGLPDIAEQNLNLYLAAVLEATLLPPPAP-EPSWRAMMDRLADVGVKAYRGVVREHPQFVAYFRQATPEQELGRLPLGSRPAKRREG-GVESLRAIPWIFAWTQTRLMLPAWLGWEQALGQALAGGEGELLKNMREQWPFFRTRIDMLEMVLAKADASIAALYDQRLVEPALQPLGAQLRDLLSQACAAVLELTGQSRL 816          
BLAST of FC932456 vs. ExPASy Swiss-Prot
Match: CAPP_PEA (Phosphoenolpyruvate carboxylase OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 5.350e-46
Identity = 100/222 (45.05%), Postives = 137/222 (61.71%), Query Frame = 1
Query:    4 FGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFNEATPQAELGYLNIGSRPTRRKSSTGIGHLRAIPWVFAWTQTRFVLPAWLGIGAGLKGVC--DMGNTEDWKEMYKEWPFFQSTIDLIEMVLGKADTHIAKRYDEVLVSESRQELGAELRRELLTTEKFVLVVSGHEKLSENTTV*GG*LR-ADSHISIL 660
            FG      R L+ +T A L   MRPP  P+ E WR LM++++ I+ + YRS V++ P F+ YF  ATP+ E G +NIGSRP +R+ S GI  LRAIPW+F WTQTRF LP WLG G+  K V   D+ N    ++MY +WPFF+ TIDL+EMV  K D  IA   D +LVS++    G +LR +   T+K +L V+ H+++ E        LR  DS+I+ L
Sbjct:  676 FGEEHLCFRTLQRFTAATLEHGMRPPSSPKPE-WRALMDQMAIIATEEYRSIVFKEPRFVEYFRLATPEMEYGRMNIGSRPAKRRPSGGIETLRAIPWIFPWTQTRFHLPVWLGFGSAFKQVIEKDVKNLHMLQDMYNQWPFFRVTIDLVEMVFAKGDPGIAALNDRLLVSQNLWPFGEQLRNKYEETKKLLLQVATHKEVLEGDPYLKQRLRLRDSYITTL 896          
BLAST of FC932456 vs. ExPASy Swiss-Prot
Match: CAPP_MARAV (Phosphoenolpyruvate carboxylase OS=Marinobacter aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) GN=ppc PE=3 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 6.988e-46
Identity = 92/207 (44.44%), Postives = 133/207 (64.25%), Query Frame = 1
Query:    1 KFGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFNEATPQAELGYLNIGSRPTRRKSSTGIGHLRAIPWVFAWTQTRFVLPAWLGIGAGLKGVCDMGNTEDWKEMYKEWPFFQSTIDLIEMVLGKADTHIAKRYDEVLV-SESRQELGAELRRELLTTEKFVLVVSGHEKLSENTTV 618
            KFGLP+ AV+ L +YTTAV+ AT+ PP  P++E WR +M+ +++ S ++YR  V ENP+F+ YF + TP+  LG L +GSRP RRK++ G+  LRAIPW+FAWTQ R +LP+WLG    L+         + +EM + WPFF++ +D++EMVL KAD  IA  Y++ LV  E    LG  LR+ L    + +L +   + L E   V
Sbjct:  618 KFGLPRLAVQSLTLYTTAVIEATLAPPPVPKDE-WREVMDWLTERSLRSYREVVRENPDFVPYFRQVTPETALGKLALGSRPARRKATGGVESLRAIPWIFAWTQMRLMLPSWLGSDVALEQAAQADRLPELREMMQGWPFFRTYVDMLEMVLAKADLRIASYYEQTLVEDEHLLALGQSLRQRLQGCIERLLELKQQQTLLEQEPV 823          
BLAST of FC932456 vs. ExPASy Swiss-Prot
Match: CAPP_ACIBT (Phosphoenolpyruvate carboxylase OS=Acinetobacter baumannii (strain ATCC 17978 / NCDC KC 755) GN=ppc PE=3 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 8.985e-46
Identity = 97/207 (46.86%), Postives = 125/207 (60.39%), Query Frame = 1
Query:    1 KFGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFNEATPQAELGYLNIGSRPTRRKSSTGIGHLRAIPWVFAWTQTRFVLPAWLGIGAGLKGVCDMGNTEDWKEMYKEWPFFQSTIDLIEMVLGKADTHIAKRYDEVLV-SESRQELGAELRRELLTTEKFVLVVSGHEKLSENTTV 618
            KFGL   A++ LEIYT A L AT+ PP  P+ E WR LM  ++  S + YR TV ENP F+ Y    TP+ EL  L +GSRP +RK S GI  LRAIPWVFAWTQ R +LPAWLG GA +  V          EM ++WP+FQ+ ID++EMVL KAD +IA  Y+  L   E  + LG +LR+ L    + +L +    KL  +  V
Sbjct:  630 KFGLEGIAMQNLEIYTAATLEATLLPPPEPKAE-WRELMNRMTDHSVKVYRQTVRENPHFVKYLRTVTPELELQMLPLGSRPAKRKVSGGIESLRAIPWVFAWTQIRLMLPAWLGTGAAINEVIADQQKATLDEMLQQWPYFQTLIDMLEMVLSKADANIALYYESHLTEDEDLKVLGNQLRQRLKDAVETLLTLKDESKLLSDNEV 835          

HSP 2 Score: 26.5646 bits (57), Expect = 8.985e-46
Identity = 11/27 (40.74%), Postives = 19/27 (70.37%), Query Frame = 3
Query:  618 LRRLIESRLPYLNPMNMLXVEILKRLR 698
            L + ++ R PYL P+++L  E++KR R
Sbjct:  836 LDQSMQVRKPYLLPLHLLQAELMKRRR 862          
BLAST of FC932456 vs. ExPASy Swiss-Prot
Match: CAPP_PSEPG (Phosphoenolpyruvate carboxylase OS=Pseudomonas putida (strain GB-1) GN=ppc PE=3 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 9.127e-46
Identity = 96/200 (48.00%), Postives = 128/200 (64.00%), Query Frame = 1
Query:    1 KFGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFNEATPQAELGYLNIGSRPTRRKSSTGIGHLRAIPWVFAWTQTRFVLPAWLGIGAGLKGVCDMGNTEDWKEMYKEWPFFQSTIDLIEMVLGKADTHIAKRYDEVLVSESRQELGAELRRELLTTEKFVLVVSGHEKL 600
            KFGLP  A + L +Y  AVL AT+ PP PP +  WR LM++++    + YRS V ENP+F+ YF ++TP+ ELG L +GSRP +R++  GI  LRAIPW+F WTQTR +LPAWLG    L      G  E   +M ++WPFF++ ID++EMVL KAD  IA+ YDE LV      LGA LR  L  + + VL ++G   L
Sbjct:  616 KFGLPGIAEQNLNLYLAAVLEATLLPPPPP-QPAWRELMDQLAADGVKAYRSVVRENPDFVEYFRQSTPEQELGRLPLGSRPAKRRAG-GIESLRAIPWIFGWTQTRLMLPAWLGWETALSNALARGQGELLAQMREQWPFFRTRIDMLEMVLAKADAQIAEAYDERLVQPHLLPLGAHLRDLLSQSCQVVLGLTGQPVL 813          
The following BLAST results are available for this feature:
BLAST of FC932456 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 229
Match NameE-valueIdentityDescription
CAPP_ALCBS4.060e-4645.45Phosphoenolpyruvate carboxylase OS=Alcanivorax bor... [more]
CAPP_VIBFM4.097e-4644.06Phosphoenolpyruvate carboxylase OS=Vibrio fischeri... [more]
CAPP_PSEPK4.097e-4648.00Phosphoenolpyruvate carboxylase OS=Pseudomonas put... [more]
CAPP_PSEP14.097e-4648.00Phosphoenolpyruvate carboxylase OS=Pseudomonas put... [more]
CAPP_PHAVU4.097e-4646.08Phosphoenolpyruvate carboxylase OS=Phaseolus vulga... [more]
CAPP_PSEMY5.350e-4648.00Phosphoenolpyruvate carboxylase OS=Pseudomonas men... [more]
CAPP_PEA5.350e-4645.05Phosphoenolpyruvate carboxylase OS=Pisum sativum P... [more]
CAPP_MARAV6.988e-4644.44Phosphoenolpyruvate carboxylase OS=Marinobacter aq... [more]
CAPP_ACIBT8.985e-4646.86Phosphoenolpyruvate carboxylase OS=Acinetobacter b... [more]
CAPP_PSEPG9.127e-4648.00Phosphoenolpyruvate carboxylase OS=Pseudomonas put... [more]

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Properties
Property NameValue
Genbank descriptionC34208G08EF PostHarveN Citrus clementina cDNA clone C34208G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932456 ID=FC932456; Name=FC932456; organism=Citrus clementina; type=EST; length=750bp
AAGTTTGGGTTGCCACAGACAGCTGTTAGACAGCTAGAGATATACACAAC
TGCTGTGCTGCTTGCAACCATGCGACCTCCTCAACCTCCTCGAGAAGAAA
AATGGCGTAATCTCATGGAGGAGATCTCAAAAATTAGTTGCCAGAATTAC
CGGAGCACAGTCTATGAAAACCCAGAATTCCTTGCCTACTTCAACGAGGC
TACACCCCAGGCTGAACTAGGGTACCTTAATATAGGAAGCCGCCCCACAA
GAAGAAAGAGCTCAACAGGAATTGGCCATCTTCGAGCCATTCCATGGGTA
TTTGCATGGACCCAGACCAGGTTTGTCCTTCCAGCTTGGCTTGGAATCGG
AGCAGGGCTGAAGGGTGTTTGTGACATGGGAAATACTGAAGACTGGAAAG
AAATGTATAAAGAATGGCCCTTTTTCCAGTCTACCATAGATCTTATAGAG
ATGGTTTTAGGGAAGGCAGACACTCATATAGCCAAGCGCTATGATGAAGT
CCTTGTTTCAGAGAGTAGGCAAGAGCTTGGTGCTGAGCTAAGGAGGGAGC
TCTTAACAACTGAGAAGTTCGTACTTGTGGTTAGTGGGCATGAGAAGCTA
TCTGAGAATACCACAGTTTGAGGAGGCTGATTGAGAGCAGACTCCCATAT
CTCAATCCTATGAATATGTTGCANGTGGAGATACTGAAGAGATTGAGACA
GGATGATGATAACCATAACTCAGAGATGCATTGCTCATCACTATAAATGG
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