FC932456

Overview
NameFC932456
Unique NameFC932456
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length750
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932456 vs. ExPASy Swiss-Prot
Match: CAPP_ALISL (Phosphoenolpyruvate carboxylase OS=Aliivibrio salmonicida (strain LFI1238) GN=ppc PE=3 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 2.033e-45
Identity = 88/203 (43.35%), Postives = 129/203 (63.55%), Query Frame = 1
Query:    1 KFGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFNEATPQAELGYLNIGSRPTRRKSSTGIGHLRAIPWVFAWTQTRFVLPAWLGIGAGLKGVCDMGNTEDWKEMYKEWPFFQSTIDLIEMVLGKADTHIAKRYDEVLVSESRQELGAELRRELLTTEKFVLVVSGHEKLSEN 609
            K GLP+ AV    +Y +A+L A + PP  P++E WR+LME +S++SC+ YR+ V    +F+ YF  ATP+ ELG L +GSRP +R  + G+  LRAIPW+F+W+Q R VLPAWLG G  ++   D G+ E  +EM +EWPFF + + ++EMV  K +  +++ YD+ L  +S   LG  LR +L    K VL V   + L E+
Sbjct:  617 KLGLPEVAVNSFNLYASAILEANLLPPPEPKQE-WRDLMEVLSEVSCEAYRNIVRGEKDFVPYFRAATPELELGKLPLGSRPAKRNPNGGVESLRAIPWIFSWSQNRLVLPAWLGAGEAIQYSIDKGHQELLEEMCREWPFFSTRLGMLEMVYTKCNPQMSEYYDQRLTDKSLWPLGVRLRNQLQADIKAVLNVENSDHLMES 818          
BLAST of FC932456 vs. ExPASy Swiss-Prot
Match: CAPP_PSEE4 (Phosphoenolpyruvate carboxylase OS=Pseudomonas entomophila (strain L48) GN=ppc PE=3 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 2.655e-45
Identity = 94/200 (47.00%), Postives = 128/200 (64.00%), Query Frame = 1
Query:    1 KFGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFNEATPQAELGYLNIGSRPTRRKSSTGIGHLRAIPWVFAWTQTRFVLPAWLGIGAGLKGVCDMGNTEDWKEMYKEWPFFQSTIDLIEMVLGKADTHIAKRYDEVLVSESRQELGAELRRELLTTEKFVLVVSGHEKL 600
            KFGLP  A + L +Y  AVL AT+ PP PP E  WR LM++++    + YR  V +NPEF+ YF ++TP+ ELG L +GSRP +R++  GI  LRAIPW+F WTQTR +LPAWLG    L      G  +   +M ++WPFF++ ID++EMVL KAD  IA+ YD+ LV      LGA LR  L  + + VL ++G + L
Sbjct:  616 KFGLPGIAEQNLNLYLAAVLEATLLPPPPP-EPAWRALMDQLAADGVKAYRGVVRDNPEFVEYFRQSTPEQELGRLPLGSRPAKRRAG-GIESLRAIPWIFGWTQTRLMLPAWLGWETALSNALARGQADLLAQMREQWPFFRTRIDMLEMVLAKADAQIAEAYDQRLVQPRLLPLGAHLRDLLSQSCQVVLGLTGQQVL 813          
BLAST of FC932456 vs. ExPASy Swiss-Prot
Match: CAPP_HAHCH (Phosphoenolpyruvate carboxylase OS=Hahella chejuensis (strain KCTC 2396) GN=ppc PE=3 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 2.655e-45
Identity = 90/200 (45.00%), Postives = 123/200 (61.50%), Query Frame = 1
Query:    1 KFGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFNEATPQAELGYLNIGSRPTRRKSSTGIGHLRAIPWVFAWTQTRFVLPAWLGIGAGLKGVCDMGNTEDWKEMYKEWPFFQSTIDLIEMVLGKADTHIAKRYDEVLVSESRQELGAELRRELLTTEKFVLVVSGHEKL 600
            KFG P+ A +   +Y  AVL A++ PP  P E  WR +M+++S ++  +YR  V E P F+ YF  ATP+ ELG L +GSRP RRK+S G+  LRAIPW+FAWTQ R +LPAWLG    L+   D G  +  K M   WPFF++ +D++EMVL K D  IA+ Y+E LV      LG ELRR      + +  + G ++L
Sbjct:  621 KFGQPKVAKQSFNLYLGAVLEASLVPPPEP-EPAWREMMDKLSHLAVNSYREVVRERPGFVEYFRSATPEQELGKLALGSRPARRKASGGVESLRAIPWIFAWTQMRLMLPAWLGSDTALQTAVDDGGADTLKAMLTGWPFFETHVDMLEMVLSKVDPEIARFYEERLVKPELHPLGDELRRRAGCAVRLINELKGQDEL 819          
BLAST of FC932456 vs. ExPASy Swiss-Prot
Match: CAPP_VIBCH (Phosphoenolpyruvate carboxylase OS=Vibrio cholerae GN=ppc PE=3 SV=2)

HSP 1 Score: 181.8 bits (460), Expect = 3.468e-45
Identity = 89/203 (43.84%), Postives = 127/203 (62.56%), Query Frame = 1
Query:    1 KFGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFNEATPQAELGYLNIGSRPTRRKSSTGIGHLRAIPWVFAWTQTRFVLPAWLGIGAGLKGVCDMGNTEDWKEMYKEWPFFQSTIDLIEMVLGKADTHIAKRYDEVLVSESRQELGAELRRELLTTEKFVLVVSGHEKLSEN 609
            K GLP+ AV    +Y +A+L A + PP  P+ E WR LM+ +S+ISC  YR  V   P+F+ YF +ATP+ ELG L +GSRP +R  + G+  LRAIPW+F+W+Q R +LPAWLG G  ++   + G+    +EM +EWPFF + + ++EMV  K    IA  YDE LV  + + LG +LR +L    K VL V  +E L ++
Sbjct:  617 KLGLPEVAVNSFNMYASAILEANLLPPPEPKNE-WRALMDILSEISCNAYRKVVRGEPDFVPYFRQATPELELGKLPLGSRPAKRNPTGGVESLRAIPWIFSWSQNRLILPAWLGAGEAIQIAINEGHQALLEEMCREWPFFSTRLGMLEMVYTKCSVSIACHYDERLVEPTLRPLGEKLRAQLQQDIKVVLNVENNENLMQS 818          
BLAST of FC932456 vs. ExPASy Swiss-Prot
Match: CAPP_PSEF5 (Phosphoenolpyruvate carboxylase OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=ppc PE=3 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 3.468e-45
Identity = 94/200 (47.00%), Postives = 127/200 (63.50%), Query Frame = 1
Query:    1 KFGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFNEATPQAELGYLNIGSRPTRRKSSTGIGHLRAIPWVFAWTQTRFVLPAWLGIGAGLKGVCDMGNTEDWKEMYKEWPFFQSTIDLIEMVLGKADTHIAKRYDEVLVSESRQELGAELRRELLTTEKFVLVVSGHEKL 600
            KFGLP  A + L +Y  AVL AT+ PP PP +  WR+LM+E++    + YR  V +NP+F+ YF ++TP+ ELG L +GSRP +R++  GI  LRAIPW+F WTQTR +LPAWLG  A L      G  +   +M ++WPFF++ ID++EMVL KAD  IA+ YDE LV      LG  LR  L      VL ++G  +L
Sbjct:  617 KFGLPDIAEQNLNLYLAAVLEATLLPPPPP-QPAWRHLMDELASDGVRAYREVVRDNPQFVEYFRQSTPEQELGRLPLGSRPAKRRAG-GIESLRAIPWIFGWTQTRLMLPAWLGWEAALSKALARGEGDLLGQMREQWPFFRTRIDMLEMVLAKADADIARSYDERLVEAELLPLGEHLRDLLSQACAVVLGLTGQSQL 814          
BLAST of FC932456 vs. ExPASy Swiss-Prot
Match: CAPP_VIBF1 (Phosphoenolpyruvate carboxylase OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=ppc PE=3 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 7.726e-45
Identity = 87/202 (43.07%), Postives = 128/202 (63.37%), Query Frame = 1
Query:    1 KFGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFNEATPQAELGYLNIGSRPTRRKSSTGIGHLRAIPWVFAWTQTRFVLPAWLGIGAGLKGVCDMGNTEDWKEMYKEWPFFQSTIDLIEMVLGKADTHIAKRYDEVLVSESRQELGAELRRELLTTEKFVLVVSGHEKLSE 606
            K GLP+ AV    +Y +A+L A + PP  P++E WR+LME +S++SC+ YR+ V    +F+ YF  ATP+ ELG L +GSRP +R  + G+  LRAIPW+F+W+Q R VLPAWLG G  ++   D G+    +EM +EWPFF + + ++EMV  K +  +++ YD+ L  +S   LG  LR +L    K VL V  ++ L E
Sbjct:  617 KLGLPEVAVNSFNLYASAILEANLLPPPEPKQE-WRDLMEVLSEVSCEAYRNVVRGEKDFVPYFRAATPELELGKLPLGSRPAKRNPNGGVESLRAIPWIFSWSQNRLVLPAWLGAGEAIQYSIDKGHQALLEEMCREWPFFSTRLGMLEMVYTKCNPQMSEYYDQRLTDKSLWPLGERLRNQLQADIKAVLNVENNDHLME 817          
BLAST of FC932456 vs. ExPASy Swiss-Prot
Match: CAPP_PROMH (Phosphoenolpyruvate carboxylase OS=Proteus mirabilis (strain HI4320) GN=ppc PE=3 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.318e-44
Identity = 91/200 (45.50%), Postives = 124/200 (62.00%), Query Frame = 1
Query:    1 KFGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFNEATPQAELGYLNIGSRPTRRKSSTGIGHLRAIPWVFAWTQTRFVLPAWLGIGAGLKGVCDMGNTEDWKEMYKEWPFFQSTIDLIEMVLGKADTHIAKRYDEVLVSESRQELGAELRRELLTTEKFVLVVSGHEKL 600
            KFGLPQ  +  L  Y  A+L A + PP  P+   W  +M+ +S +SC+ YR  V    +F+ YF  ATP+ ELG L +GSRP +R+ + G+  LRAIPW+FAWTQ R +LPAWLG GA L+   D G      +M + WPFF + I ++EMV  KAD  +A+ YD+ LV E+   LGA+LR++L    K VL +S  E L
Sbjct:  619 KFGLPQVTISSLAHYAGAILEANLLPPPEPKTA-WIEVMDALSDVSCEMYRGYVRGEKDFVPYFRAATPEGELGKLPLGSRPAKRRPTGGVETLRAIPWIFAWTQNRLMLPAWLGAGAALQHEIDNGKQAVLDDMCENWPFFNTRIAMLEMVYAKADLWLAEYYDQRLVEENLWPLGAKLRQQLSDDIKSVLAISKDEHL 817          
BLAST of FC932456 vs. ExPASy Swiss-Prot
Match: CAPP_HAEIE (Phosphoenolpyruvate carboxylase OS=Haemophilus influenzae (strain PittEE) GN=ppc PE=3 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.318e-44
Identity = 86/200 (43.00%), Postives = 127/200 (63.50%), Query Frame = 1
Query:    1 KFGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFNEATPQAELGYLNIGSRPTRRKSSTGIGHLRAIPWVFAWTQTRFVLPAWLGIGAGLKGVCDMGNTEDWKEMYKEWPFFQSTIDLIEMVLGKADTHIAKRYDEVLVSESRQELGAELRRELLTTEKFVLVVSGHEKL 600
            K GLP  AV   ++Y +A+L A + PP  P+ E WRN+M+E+S ISC  YR  V  + +F+ YF  ATP+ EL  L +GSRP +R  + G+  LRAIPW+FAW Q R +LPAWLG GA ++ + + G  +   +M + WPFF + I ++EMV  K+DT ++++YD+ LV +    LG  LR++L    + VL +S   +L
Sbjct:  619 KLGLPTVAVETFDLYASAILEANLLPPPEPKPE-WRNIMDELSTISCDIYRGVVRGDKDFVPYFRSATPEQELSKLPLGSRPAKRNPNGGVESLRAIPWIFAWMQNRLMLPAWLGAGASIRQIIEQGKGDIIHKMCENWPFFSTRIGMLEMVFSKSDTWLSQQYDQRLVKKELWYLGENLRKQLEDDIQTVLSLSHQSEL 817          
BLAST of FC932456 vs. ExPASy Swiss-Prot
Match: CAPP_HAEIG (Phosphoenolpyruvate carboxylase OS=Haemophilus influenzae (strain PittGG) GN=ppc PE=3 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 2.248e-44
Identity = 86/200 (43.00%), Postives = 126/200 (63.00%), Query Frame = 1
Query:    1 KFGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFNEATPQAELGYLNIGSRPTRRKSSTGIGHLRAIPWVFAWTQTRFVLPAWLGIGAGLKGVCDMGNTEDWKEMYKEWPFFQSTIDLIEMVLGKADTHIAKRYDEVLVSESRQELGAELRRELLTTEKFVLVVSGHEKL 600
            K GLP  AV   ++Y +A+L A + PP  P+ E WR +M+E+S ISC  YR  V  + +F+ YF  ATP+ EL  L +GSRP +R  + G+  LRAIPW+FAW Q R +LPAWLG GA ++ + + G  +   +M + WPFF + I ++EMV  K+DT ++++YD+ LV +    LG  LR++L    + VL +S   KL
Sbjct:  619 KLGLPAVAVETFDLYASAILEANLLPPPEPKPE-WRTIMDELSTISCDIYRGVVRGDKDFVPYFRSATPEQELSKLPLGSRPAKRNPNGGVESLRAIPWIFAWMQNRLMLPAWLGAGAAIRQIIEQGKGDIIHKMCENWPFFSTRIGMLEMVFSKSDTWLSQQYDQRLVKKELWYLGENLRKQLEDDIQTVLSLSHQSKL 817          
BLAST of FC932456 vs. ExPASy Swiss-Prot
Match: CAPP_PHOPR (Phosphoenolpyruvate carboxylase OS=Photobacterium profundum GN=ppc PE=3 SV=2)

HSP 1 Score: 178.718 bits (452), Expect = 2.936e-44
Identity = 88/202 (43.56%), Postives = 129/202 (63.86%), Query Frame = 1
Query:    1 KFGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFNEATPQAELGYLNIGSRPTRRKSSTGIGHLRAIPWVFAWTQTRFVLPAWLGIGAGLKGVCDMGNTEDWKEMYKEWPFFQSTIDLIEMVLGKADTHIAKRYDEVLVSESRQELGAELRRELLTTEKFVLVVSGHEKLSE 606
            K GLP  AV  L +Y +A L A + PP  P++E W +LM+ +S++SC++YR+ V  + EF+ YF  ATP+ ELG L +GSRP +R  + G+  LRAIPW+FAW+Q R +LPAWLG G  ++   D G+ +  ++M +EWPFF + + ++EMV  K +  IA+ YD+ L  +S   LG +LR +L    K VL V  +  L E
Sbjct:  617 KLGLPDVAVNSLSLYASATLEANLLPPPAPKKE-WCDLMDVLSEVSCESYRNVVRGSEEFVPYFRAATPELELGKLPLGSRPAKRNPNGGVESLRAIPWIFAWSQNRLLLPAWLGAGEAIQYSIDKGHAQLLEDMCREWPFFSTRLGMLEMVYTKTNVGIAEYYDQRLTDKSLWPLGQKLRDQLQQDIKAVLNVENNAHLME 817          
The following BLAST results are available for this feature:
BLAST of FC932456 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 229
Match NameE-valueIdentityDescription
CAPP_ALISL2.033e-4543.35Phosphoenolpyruvate carboxylase OS=Aliivibrio salm... [more]
CAPP_PSEE42.655e-4547.00Phosphoenolpyruvate carboxylase OS=Pseudomonas ent... [more]
CAPP_HAHCH2.655e-4545.00Phosphoenolpyruvate carboxylase OS=Hahella chejuen... [more]
CAPP_VIBCH3.468e-4543.84Phosphoenolpyruvate carboxylase OS=Vibrio cholerae... [more]
CAPP_PSEF53.468e-4547.00Phosphoenolpyruvate carboxylase OS=Pseudomonas flu... [more]
CAPP_VIBF17.726e-4543.07Phosphoenolpyruvate carboxylase OS=Vibrio fischeri... [more]
CAPP_PROMH1.318e-4445.50Phosphoenolpyruvate carboxylase OS=Proteus mirabil... [more]
CAPP_HAEIE1.318e-4443.00Phosphoenolpyruvate carboxylase OS=Haemophilus inf... [more]
CAPP_HAEIG2.248e-4443.00Phosphoenolpyruvate carboxylase OS=Haemophilus inf... [more]
CAPP_PHOPR2.936e-4443.56Phosphoenolpyruvate carboxylase OS=Photobacterium ... [more]

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Properties
Property NameValue
Genbank descriptionC34208G08EF PostHarveN Citrus clementina cDNA clone C34208G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932456 ID=FC932456; Name=FC932456; organism=Citrus clementina; type=EST; length=750bp
AAGTTTGGGTTGCCACAGACAGCTGTTAGACAGCTAGAGATATACACAAC
TGCTGTGCTGCTTGCAACCATGCGACCTCCTCAACCTCCTCGAGAAGAAA
AATGGCGTAATCTCATGGAGGAGATCTCAAAAATTAGTTGCCAGAATTAC
CGGAGCACAGTCTATGAAAACCCAGAATTCCTTGCCTACTTCAACGAGGC
TACACCCCAGGCTGAACTAGGGTACCTTAATATAGGAAGCCGCCCCACAA
GAAGAAAGAGCTCAACAGGAATTGGCCATCTTCGAGCCATTCCATGGGTA
TTTGCATGGACCCAGACCAGGTTTGTCCTTCCAGCTTGGCTTGGAATCGG
AGCAGGGCTGAAGGGTGTTTGTGACATGGGAAATACTGAAGACTGGAAAG
AAATGTATAAAGAATGGCCCTTTTTCCAGTCTACCATAGATCTTATAGAG
ATGGTTTTAGGGAAGGCAGACACTCATATAGCCAAGCGCTATGATGAAGT
CCTTGTTTCAGAGAGTAGGCAAGAGCTTGGTGCTGAGCTAAGGAGGGAGC
TCTTAACAACTGAGAAGTTCGTACTTGTGGTTAGTGGGCATGAGAAGCTA
TCTGAGAATACCACAGTTTGAGGAGGCTGATTGAGAGCAGACTCCCATAT
CTCAATCCTATGAATATGTTGCANGTGGAGATACTGAAGAGATTGAGACA
GGATGATGATAACCATAACTCAGAGATGCATTGCTCATCACTATAAATGG
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