FC932456

Overview
NameFC932456
Unique NameFC932456
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length750
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14298 contig Ccv1_Contig14298:781..1532. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932456 vs. ExPASy Swiss-Prot
Match: CAPP_AERS4 (Phosphoenolpyruvate carboxylase OS=Aeromonas salmonicida (strain A449) GN=ppc PE=3 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 1.871e-49
Identity = 90/192 (46.88%), Postives = 128/192 (66.67%), Query Frame = 1
Query:    1 KFGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFNEATPQAELGYLNIGSRPTRRKSSTGIGHLRAIPWVFAWTQTRFVLPAWLGIGAGLKGVCDMGNTEDWKEMYKEWPFFQSTIDLIEMVLGKADTHIAKRYDEVLVSESRQELGAELRRELLTTEKFVL 576
            KFGLP+ A+  L +YT+AVL   + PP  P+E  WR +ME+++ +SC +YRS V  +P+F+ YF  ATP+ ELG L +GSRP +RK + G+  LRAIPW+FAWTQ R +LPAWLG   GL+     G     +EM ++WPFF++ ++++EMV  KAD  +A+ YD  LV +    LG +LR+EL    + VL
Sbjct:  617 KFGLPKVAIHSLNLYTSAVLEGNLLPPPKPKES-WRAVMEQLATVSCDHYRSIVRGHPDFVPYFRAATPEMELGKLPLGSRPAKRKPNGGVESLRAIPWIFAWTQNRLMLPAWLGAHKGLEHAITDGQKSVLEEMSRQWPFFRTRLEMLEMVFLKADLWLAEYYDTRLVPQELWNLGKQLRQELADAIQIVL 807          

HSP 2 Score: 29.261 bits (64), Expect = 1.871e-49
Identity = 13/37 (35.14%), Postives = 22/37 (59.46%), Query Frame = 3
Query:  618 LRRLIESRLPYLNPMNMLXVEILKRLRQDDDNHNSEM 728
            ++  I  R PY +P+N+L VE+L R R   +  + E+
Sbjct:  822 IKESINLRNPYTDPLNVLQVELLGRSRSHTETLHPEL 858          
BLAST of FC932456 vs. ExPASy Swiss-Prot
Match: CAPP_AERHH (Phosphoenolpyruvate carboxylase OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB 9240) GN=ppc PE=3 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 3.179e-49
Identity = 90/192 (46.88%), Postives = 131/192 (68.23%), Query Frame = 1
Query:    1 KFGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFNEATPQAELGYLNIGSRPTRRKSSTGIGHLRAIPWVFAWTQTRFVLPAWLGIGAGLKGVCDMGNTEDWKEMYKEWPFFQSTIDLIEMVLGKADTHIAKRYDEVLVSESRQELGAELRRELLTTEKFVL 576
            KFGLP+ A++ L +YT+AVL   + PP  P+E  WR +ME+++ +SC +YRS V  +P+F+ YF  ATP+ ELG L +GSRP++RK + G+  LRAIPW+FAWTQ R +LPAWLG   GL+     G     +EM ++WPFF++ ++++EMV  KAD  +A+ YD  LV +    LG +LR+EL  + + VL
Sbjct:  617 KFGLPKVAIQSLNLYTSAVLEGNLLPPPKPKE-CWRAVMEQLASVSCDHYRSIVRGHPDFVPYFRAATPEMELGKLPLGSRPSKRKPNGGVESLRAIPWIFAWTQNRLMLPAWLGAHKGLQQAIADGQKGVLEEMSRQWPFFRTRLEMLEMVFLKADVWLAEYYDTRLVPKELWGLGKQLRQELADSIQVVL 807          

HSP 2 Score: 30.4166 bits (67), Expect = 3.179e-49
Identity = 15/38 (39.47%), Postives = 23/38 (60.53%), Query Frame = 3
Query:  618 LRRLIESRLPYLNPMNMLXVEILKRLRQDDDNHNSEMH 731
            ++  I+ R PY +P+N+L VE+L R R    NH   +H
Sbjct:  822 IKESIKLRNPYTDPLNVLQVELLGRSR----NHAETLH 855          
BLAST of FC932456 vs. ExPASy Swiss-Prot
Match: CAPP2_ARATH (Phosphoenolpyruvate carboxylase 2 OS=Arabidopsis thaliana GN=PPC2 PE=1 SV=2)

HSP 1 Score: 194.897 bits (494), Expect = 3.959e-49
Identity = 101/203 (49.75%), Postives = 127/203 (62.56%), Query Frame = 1
Query:    4 FGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFNEATPQAELGYLNIGSRPTRRKSSTGIGHLRAIPWVFAWTQTRFVLPAWLGIGAGLKGVC--DMGNTEDWKEMYKEWPFFQSTIDLIEMVLGKADTHIAKRYDEVLVSESRQELGAELRRELLTTEKFVLVVSGHEKLSE 606
            FG      R L+ +T A L   M PP  P+ E WR LM+E++ I+ + YRS V++ P F+ YF  ATP+ E G +NIGSRP++RK S GI  LRAIPW+FAWTQTRF LP WLG G   K V   D  N    KEMY +WPFF+ TIDL+EMV  K D  IA  YD +LVSE  Q  G +LR     T + +L V+GH+ + E
Sbjct:  674 FGEEHLCFRTLQRFTAATLEHGMHPPVSPKPE-WRVLMDEMAIIATEEYRSVVFKEPRFVEYFRLATPELEYGRMNIGSRPSKRKPSGGIESLRAIPWIFAWTQTRFHLPVWLGFGGAFKRVIQKDSKNLNMLKEMYNQWPFFRVTIDLVEMVFAKGDPGIAALYDRLLVSEELQPFGEQLRVNYQETRRLLLQVAGHKDILE 875          
BLAST of FC932456 vs. ExPASy Swiss-Prot
Match: CAPP1_SOYBN (Phosphoenolpyruvate carboxylase, housekeeping isozyme OS=Glycine max GN=PPC16 PE=2 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 3.959e-49
Identity = 107/225 (47.56%), Postives = 137/225 (60.89%), Query Frame = 1
Query:    4 FGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFNEATPQAELGYLNIGSRPTRRKSSTGIGHLRAIPWVFAWTQTRFVLPAWLGIGAGLKGVC--DMGNTEDWKEMYKEWPFFQSTIDLIEMVLGKADTHIAKRYDEVLVSESRQELGAELRRELLTTEKFVLVVSGHEKLSENTTV*GG*LR-ADSHISIL*IC 669
            FG      R L+ +T A L   M PP  P+ E WR LM+E++ I+ + YRS V++ P F+ YF  ATP+ E G +NIGSRP +R+ S GI  LRAIPW+FAWTQTRF LP WLG GA  K V   D+ N    +EMY +WPFF+ TIDL+EMV  K D  IA  YD +LVSE     G +LR     T++ +L V+GH  L E        LR  DS+I+ L +C
Sbjct:  677 FGEQHLCFRTLQRFTAATLEHGMHPPISPKPE-WRALMDEMAVIATEEYRSIVFKEPRFVEYFRLATPELEYGRMNIGSRPAKRRPSGGIETLRAIPWIFAWTQTRFHLPVWLGFGAAFKHVIEKDVRNIHVLQEMYNQWPFFRVTIDLVEMVFAKGDPGIAALYDRLLVSEDLWSFGEQLRTMYEETKELLLQVAGHRDLLEGDPYLKQRLRLRDSYITTLNVC 900          
BLAST of FC932456 vs. ExPASy Swiss-Prot
Match: CAPP1_CHLRE (Phosphoenolpyruvate carboxylase 1 OS=Chlamydomonas reinhardtii GN=Ppc1 PE=1 SV=2)

HSP 1 Score: 191.43 bits (485), Expect = 4.139e-49
Identity = 100/205 (48.78%), Postives = 128/205 (62.44%), Query Frame = 1
Query:    1 KFGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFNEATPQAELGYLNIGSRPTRRKSSTGIGHLRAIPWVFAWTQTRFVLPAWLGIGAGLKGVCDMGNTEDWKEMYKEWPFFQSTIDLIEMVLGKADTHIAKRYDEVLVSESRQELGAELRRELLTTEKFVLVVSGHEKLSENTT 615
            +FG  +   R L++YT+AVL A + PP  P +E WR+LM  ++  SC  YRS VY  PEF  YF ++T  +ELG LNIGSRP+ RKS  GI  LRAIPW+FAWTQ R  LP WLGIG  L+   D G     ++MY  WPFF ST+DL+EMVL KAD+ ++  Y+  LV  S   LG  LR  L  T++ +L+V     L E  T
Sbjct:  678 QFGEKEVCFRTLDLYTSAVLEAALDPPPAPAQE-WRDLMSLLATESCDMYRSVVYRTPEFYDYFMQSTAASELGRLNIGSRPSSRKSG-GIETLRAIPWIFAWTQQRLHLPVWLGIGEALEAAIDKGYGPVLQDMYANWPFFTSTLDLVEMVLAKADSRLSAFYERTLVDSSLAPLGQRLRELLAKTQQNILIVVRKSVLLEGNT 880          

HSP 2 Score: 25.0238 bits (53), Expect = 4.139e-49
Identity = 14/41 (34.15%), Postives = 23/41 (56.10%), Query Frame = 3
Query:  615 SLRRLIESRLPYLNPMNMLXVEILKRLRQDDDNHNSEMHCS 737
            +L   I  R PY+ P+N+L    L+ LR+  D  ++E + S
Sbjct:  888 NLDEKIRLRSPYVAPLNVLQALSLQGLRKFRDGGDTEYNPS 928          
BLAST of FC932456 vs. ExPASy Swiss-Prot
Match: CAPP_YERE8 (Phosphoenolpyruvate carboxylase OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=ppc PE=3 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 5.170e-49
Identity = 94/200 (47.00%), Postives = 130/200 (65.00%), Query Frame = 1
Query:    1 KFGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFNEATPQAELGYLNIGSRPTRRKSSTGIGHLRAIPWVFAWTQTRFVLPAWLGIGAGLKGVCDMGNTEDWKEMYKEWPFFQSTIDLIEMVLGKADTHIAKRYDEVLVSESRQELGAELRRELLTTEKFVLVVSGHEKL 600
            KFGLP+  +  L +Y +AVL A + PP  P++E W  +M+ +S  SC+ YR  V ENP+F+ YF  ATP+ ELG L +GSRP +R+ + G+  LRAIPW+FAWTQ R +LPAWLG GAGL+   D G  E    M ++WPFF + I ++EMV  KAD  +A+ YD+ LV +S   LG +LR +L    K VL ++  + L
Sbjct:  619 KFGLPEVTISSLALYASAVLEANLLPPPEPKKE-WNEVMDILSDASCEMYRGYVRENPQFVPYFRAATPELELGKLPLGSRPAKRRPNGGVESLRAIPWIFAWTQNRLMLPAWLGAGAGLQKAIDAGKKEVLATMCRDWPFFSTRIGMLEMVFAKADLWLAEYYDQRLVDKSLWPLGQQLRDQLEADIKVVLAIANDDHL 817          
BLAST of FC932456 vs. ExPASy Swiss-Prot
Match: CAPP3_ARATH (Phosphoenolpyruvate carboxylase 3 OS=Arabidopsis thaliana GN=PPC3 PE=2 SV=2)

HSP 1 Score: 194.126 bits (492), Expect = 6.753e-49
Identity = 105/225 (46.67%), Postives = 138/225 (61.33%), Query Frame = 1
Query:    4 FGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFNEATPQAELGYLNIGSRPTRRKSSTGIGHLRAIPWVFAWTQTRFVLPAWLGIGAGLKGVC--DMGNTEDWKEMYKEWPFFQSTIDLIEMVLGKADTHIAKRYDEVLVSESRQELGAELRRELLTTEKFVLVVSGHEKLSENTTV*GG*LR-ADSHISIL*IC 669
            FG      R L+ +T A L   M PP  P+ E WR L++E++ ++ + YRS V++ P F+ YF  ATP+ E G +NIGSRP++RK S GI  LRAIPW+FAWTQTRF LP WLG GA  +     D+ N    ++MYK+WPFF+ TIDLIEMV  K D  IA  YD++LVSE     G +LR     T+  VL  +GH+ L E        LR  DS+I+ L +C
Sbjct:  678 FGEAHLCFRTLQRFTAATLEHGMNPPISPKPE-WRALLDEMAVVATEEYRSVVFQEPRFVEYFRLATPELEYGRMNIGSRPSKRKPSGGIESLRAIPWIFAWTQTRFHLPVWLGFGAAFRYAIKKDVRNLHMLQDMYKQWPFFRVTIDLIEMVFAKGDPGIAALYDKLLVSEDLWAFGEKLRANFDETKNLVLQTAGHKDLLEGDPYLKQRLRLRDSYITTLNVC 901          
BLAST of FC932456 vs. ExPASy Swiss-Prot
Match: CAPP1_MESCR (Phosphoenolpyruvate carboxylase 1 OS=Mesembryanthemum crystallinum GN=PPCA PE=2 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 6.753e-49
Identity = 104/225 (46.22%), Postives = 140/225 (62.22%), Query Frame = 1
Query:    4 FGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFNEATPQAELGYLNIGSRPTRRKSSTGIGHLRAIPWVFAWTQTRFVLPAWLGIGAGLKGVC--DMGNTEDWKEMYKEWPFFQSTIDLIEMVLGKADTHIAKRYDEVLVSESRQELGAELRRELLTTEKFVLVVSGHEKLSENTTV*GG*LR-ADSHISIL*IC 669
            FG      R L+ YT A L   M PP+ P+ E WR L+++++ ++ + YRS V++ P F+ YF  ATP+ E G +NIGSRP++RK S GI  LRAIPW+FAWTQTRF LP WLG+G  LK V   D+ N    ++MY  +PFF+ TIDL+EMV  K D  IA  YD++LVSE  Q  G  LR     T++ +L V+GH+ L E        LR  D +I+ L +C
Sbjct:  676 FGEQHLCFRTLQRYTAATLEHGMNPPKSPKPE-WRALLDQMAVVATEEYRSIVFKEPRFVEYFRLATPETEYGRMNIGSRPSKRKPSGGIESLRAIPWIFAWTQTRFHLPVWLGVGGALKHVLEKDIRNHNMLRDMYNNFPFFRVTIDLLEMVFAKGDPEIAALYDKLLVSEELQSFGERLRANYEDTKRRLLEVAGHKDLLEGDPYLKQRLRLRDPYITTLNVC 899          
BLAST of FC932456 vs. ExPASy Swiss-Prot
Match: CAPP_YERPY (Phosphoenolpyruvate carboxylase OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=ppc PE=3 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 1.504e-48
Identity = 94/200 (47.00%), Postives = 128/200 (64.00%), Query Frame = 1
Query:    1 KFGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFNEATPQAELGYLNIGSRPTRRKSSTGIGHLRAIPWVFAWTQTRFVLPAWLGIGAGLKGVCDMGNTEDWKEMYKEWPFFQSTIDLIEMVLGKADTHIAKRYDEVLVSESRQELGAELRRELLTTEKFVLVVSGHEKL 600
            KFGLP+  +  L +Y  A+L A + PP  P++E W  +M+ +S  SC  YRS V ENPEF+ YF  ATP+ ELG L +GSRP +R+   G+  LRAIPW+FAWTQ R +LPAWLG GAGL+   D G  +    M ++WPFF + I ++EMV  KAD  +A+ YD+ LV +S   LG +LR +L    K VL ++  + L
Sbjct:  619 KFGLPEVTISSLALYAGAILEANLLPPPEPKKE-WIEVMDLLSDASCDMYRSYVRENPEFVRYFRAATPELELGKLPLGSRPAKRRPDGGVESLRAIPWIFAWTQNRLMLPAWLGAGAGLQRAIDAGKRDVLATMCRDWPFFSTRIGMLEMVFAKADLWLAEYYDQRLVDKSLWPLGQQLRDQLAADIKVVLAIANDDHL 817          
BLAST of FC932456 vs. ExPASy Swiss-Prot
Match: CAPP_YERPS (Phosphoenolpyruvate carboxylase OS=Yersinia pseudotuberculosis GN=ppc PE=3 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 1.504e-48
Identity = 94/200 (47.00%), Postives = 128/200 (64.00%), Query Frame = 1
Query:    1 KFGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFNEATPQAELGYLNIGSRPTRRKSSTGIGHLRAIPWVFAWTQTRFVLPAWLGIGAGLKGVCDMGNTEDWKEMYKEWPFFQSTIDLIEMVLGKADTHIAKRYDEVLVSESRQELGAELRRELLTTEKFVLVVSGHEKL 600
            KFGLP+  +  L +Y  A+L A + PP  P++E W  +M+ +S  SC  YRS V ENPEF+ YF  ATP+ ELG L +GSRP +R+   G+  LRAIPW+FAWTQ R +LPAWLG GAGL+   D G  +    M ++WPFF + I ++EMV  KAD  +A+ YD+ LV +S   LG +LR +L    K VL ++  + L
Sbjct:  619 KFGLPEVTISSLALYAGAILEANLLPPPEPKKE-WIEVMDLLSDASCDMYRSYVRENPEFVRYFRAATPELELGKLPLGSRPAKRRPDGGVESLRAIPWIFAWTQNRLMLPAWLGAGAGLQRAIDAGKRDVLATMCRDWPFFSTRIGMLEMVFAKADLWLAEYYDQRLVDKSLWPLGQQLRDQLAADIKVVLAIANDDHL 817          
The following BLAST results are available for this feature:
BLAST of FC932456 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 229
Match NameE-valueIdentityDescription
CAPP_AERS41.871e-4946.88Phosphoenolpyruvate carboxylase OS=Aeromonas salmo... [more]
CAPP_AERHH3.179e-4946.88Phosphoenolpyruvate carboxylase OS=Aeromonas hydro... [more]
CAPP2_ARATH3.959e-4949.75Phosphoenolpyruvate carboxylase 2 OS=Arabidopsis t... [more]
CAPP1_SOYBN3.959e-4947.56Phosphoenolpyruvate carboxylase, housekeeping isoz... [more]
CAPP1_CHLRE4.139e-4948.78Phosphoenolpyruvate carboxylase 1 OS=Chlamydomonas... [more]
CAPP_YERE85.170e-4947.00Phosphoenolpyruvate carboxylase OS=Yersinia entero... [more]
CAPP3_ARATH6.753e-4946.67Phosphoenolpyruvate carboxylase 3 OS=Arabidopsis t... [more]
CAPP1_MESCR6.753e-4946.22Phosphoenolpyruvate carboxylase 1 OS=Mesembryanthe... [more]
CAPP_YERPY1.504e-4847.00Phosphoenolpyruvate carboxylase OS=Yersinia pseudo... [more]
CAPP_YERPS1.504e-4847.00Phosphoenolpyruvate carboxylase OS=Yersinia pseudo... [more]

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Properties
Property NameValue
Genbank descriptionC34208G08EF PostHarveN Citrus clementina cDNA clone C34208G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932456 ID=FC932456; Name=FC932456; organism=Citrus clementina; type=EST; length=750bp
AAGTTTGGGTTGCCACAGACAGCTGTTAGACAGCTAGAGATATACACAAC
TGCTGTGCTGCTTGCAACCATGCGACCTCCTCAACCTCCTCGAGAAGAAA
AATGGCGTAATCTCATGGAGGAGATCTCAAAAATTAGTTGCCAGAATTAC
CGGAGCACAGTCTATGAAAACCCAGAATTCCTTGCCTACTTCAACGAGGC
TACACCCCAGGCTGAACTAGGGTACCTTAATATAGGAAGCCGCCCCACAA
GAAGAAAGAGCTCAACAGGAATTGGCCATCTTCGAGCCATTCCATGGGTA
TTTGCATGGACCCAGACCAGGTTTGTCCTTCCAGCTTGGCTTGGAATCGG
AGCAGGGCTGAAGGGTGTTTGTGACATGGGAAATACTGAAGACTGGAAAG
AAATGTATAAAGAATGGCCCTTTTTCCAGTCTACCATAGATCTTATAGAG
ATGGTTTTAGGGAAGGCAGACACTCATATAGCCAAGCGCTATGATGAAGT
CCTTGTTTCAGAGAGTAGGCAAGAGCTTGGTGCTGAGCTAAGGAGGGAGC
TCTTAACAACTGAGAAGTTCGTACTTGTGGTTAGTGGGCATGAGAAGCTA
TCTGAGAATACCACAGTTTGAGGAGGCTGATTGAGAGCAGACTCCCATAT
CTCAATCCTATGAATATGTTGCANGTGGAGATACTGAAGAGATTGAGACA
GGATGATGATAACCATAACTCAGAGATGCATTGCTCATCACTATAAATGG
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