FC932456

Overview
NameFC932456
Unique NameFC932456
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length750
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14298 contig Ccv1_Contig14298:781..1532. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC932456 vs. ExPASy Swiss-Prot
Match: CAPP_YERPP (Phosphoenolpyruvate carboxylase OS=Yersinia pestis (strain Pestoides F) GN=ppc PE=3 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 1.504e-48
Identity = 94/200 (47.00%), Postives = 128/200 (64.00%), Query Frame = 1 
Query:    1 KFGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFNEATPQAELGYLNIGSRPTRRKSSTGIGHLRAIPWVFAWTQTRFVLPAWLGIGAGLKGVCDMGNTEDWKEMYKEWPFFQSTIDLIEMVLGKADTHIAKRYDEVLVSESRQELGAELRRELLTTEKFVLVVSGHEKL 600
            KFGLP+  +  L +Y  A+L A + PP  P++E W  +M+ +S  SC  YRS V ENPEF+ YF  ATP+ ELG L +GSRP +R+   G+  LRAIPW+FAWTQ R +LPAWLG GAGL+   D G  +    M ++WPFF + I ++EMV  KAD  +A+ YD+ LV +S   LG +LR +L    K VL ++  + L
Sbjct:  619 KFGLPEVTISSLALYAGAILEANLLPPPEPKKE-WIEVMDLLSDASCDMYRSYVRENPEFVRYFRAATPELELGKLPLGSRPAKRRPDGGVESLRAIPWIFAWTQNRLMLPAWLGAGAGLQRAIDAGKQDVLATMCRDWPFFSTRIGMLEMVFAKADLWLAEYYDQRLVDKSLWPLGQQLRDQLAADIKVVLAIANDDHL 817
[Close]
BLAST of FC932456 vs. ExPASy Swiss-Prot
Match: CAPP_YERPN (Phosphoenolpyruvate carboxylase OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=ppc PE=3 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 1.504e-48
Identity = 94/200 (47.00%), Postives = 128/200 (64.00%), Query Frame = 1 
Query:    1 KFGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFNEATPQAELGYLNIGSRPTRRKSSTGIGHLRAIPWVFAWTQTRFVLPAWLGIGAGLKGVCDMGNTEDWKEMYKEWPFFQSTIDLIEMVLGKADTHIAKRYDEVLVSESRQELGAELRRELLTTEKFVLVVSGHEKL 600
            KFGLP+  +  L +Y  A+L A + PP  P++E W  +M+ +S  SC  YRS V ENPEF+ YF  ATP+ ELG L +GSRP +R+   G+  LRAIPW+FAWTQ R +LPAWLG GAGL+   D G  +    M ++WPFF + I ++EMV  KAD  +A+ YD+ LV +S   LG +LR +L    K VL ++  + L
Sbjct:  619 KFGLPEVTISSLALYAGAILEANLLPPPEPKKE-WIEVMDLLSDASCDMYRSYVRENPEFVRYFRAATPELELGKLPLGSRPAKRRPDGGVESLRAIPWIFAWTQNRLMLPAWLGAGAGLQRAIDAGKQDVLATMCRDWPFFSTRIGMLEMVFAKADLWLAEYYDQRLVDKSLWPLGQQLRDQLAADIKVVLAIANDDHL 817
[Close]
BLAST of FC932456 vs. ExPASy Swiss-Prot
Match: CAPP_YERPE (Phosphoenolpyruvate carboxylase OS=Yersinia pestis GN=ppc PE=3 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 1.504e-48
Identity = 94/200 (47.00%), Postives = 128/200 (64.00%), Query Frame = 1 
Query:    1 KFGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFNEATPQAELGYLNIGSRPTRRKSSTGIGHLRAIPWVFAWTQTRFVLPAWLGIGAGLKGVCDMGNTEDWKEMYKEWPFFQSTIDLIEMVLGKADTHIAKRYDEVLVSESRQELGAELRRELLTTEKFVLVVSGHEKL 600
            KFGLP+  +  L +Y  A+L A + PP  P++E W  +M+ +S  SC  YRS V ENPEF+ YF  ATP+ ELG L +GSRP +R+   G+  LRAIPW+FAWTQ R +LPAWLG GAGL+   D G  +    M ++WPFF + I ++EMV  KAD  +A+ YD+ LV +S   LG +LR +L    K VL ++  + L
Sbjct:  619 KFGLPEVTISSLALYAGAILEANLLPPPEPKKE-WIEVMDLLSDASCDMYRSYVRENPEFVRYFRAATPELELGKLPLGSRPAKRRPDGGVESLRAIPWIFAWTQNRLMLPAWLGAGAGLQRAIDAGKQDVLATMCRDWPFFSTRIGMLEMVFAKADLWLAEYYDQRLVDKSLWPLGQQLRDQLAADIKVVLAIANDDHL 817
[Close]
BLAST of FC932456 vs. ExPASy Swiss-Prot
Match: CAPP_YERPB (Phosphoenolpyruvate carboxylase OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=ppc PE=3 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 1.504e-48
Identity = 94/200 (47.00%), Postives = 128/200 (64.00%), Query Frame = 1 
Query:    1 KFGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFNEATPQAELGYLNIGSRPTRRKSSTGIGHLRAIPWVFAWTQTRFVLPAWLGIGAGLKGVCDMGNTEDWKEMYKEWPFFQSTIDLIEMVLGKADTHIAKRYDEVLVSESRQELGAELRRELLTTEKFVLVVSGHEKL 600
            KFGLP+  +  L +Y  A+L A + PP  P++E W  +M+ +S  SC  YRS V ENPEF+ YF  ATP+ ELG L +GSRP +R+   G+  LRAIPW+FAWTQ R +LPAWLG GAGL+   D G  +    M ++WPFF + I ++EMV  KAD  +A+ YD+ LV +S   LG +LR +L    K VL ++  + L
Sbjct:  619 KFGLPEVTISSLALYAGAILEANLLPPPEPKKE-WIEVMDLLSDASCDMYRSYVRENPEFVRYFRAATPELELGKLPLGSRPAKRRPDGGVESLRAIPWIFAWTQNRLMLPAWLGAGAGLQRAIDAGKRDVLATMCRDWPFFSTRIGMLEMVFAKADLWLAEYYDQRLVDKSLWPLGQQLRDQLAADIKVVLAIANDDHL 817
[Close]
BLAST of FC932456 vs. ExPASy Swiss-Prot
Match: CAPP_YERPA (Phosphoenolpyruvate carboxylase OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=ppc PE=3 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 1.504e-48
Identity = 94/200 (47.00%), Postives = 128/200 (64.00%), Query Frame = 1 
Query:    1 KFGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFNEATPQAELGYLNIGSRPTRRKSSTGIGHLRAIPWVFAWTQTRFVLPAWLGIGAGLKGVCDMGNTEDWKEMYKEWPFFQSTIDLIEMVLGKADTHIAKRYDEVLVSESRQELGAELRRELLTTEKFVLVVSGHEKL 600
            KFGLP+  +  L +Y  A+L A + PP  P++E W  +M+ +S  SC  YRS V ENPEF+ YF  ATP+ ELG L +GSRP +R+   G+  LRAIPW+FAWTQ R +LPAWLG GAGL+   D G  +    M ++WPFF + I ++EMV  KAD  +A+ YD+ LV +S   LG +LR +L    K VL ++  + L
Sbjct:  619 KFGLPEVTISSLALYAGAILEANLLPPPEPKKE-WIEVMDLLSDASCDMYRSYVRENPEFVRYFRAATPELELGKLPLGSRPAKRRPDGGVESLRAIPWIFAWTQNRLMLPAWLGAGAGLQRAIDAGKQDVLATMCRDWPFFSTRIGMLEMVFAKADLWLAEYYDQRLVDKSLWPLGQQLRDQLAADIKVVLAIANDDHL 817
[Close]
BLAST of FC932456 vs. ExPASy Swiss-Prot
Match: CAPP_YERP3 (Phosphoenolpyruvate carboxylase OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=ppc PE=3 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 1.504e-48
Identity = 94/200 (47.00%), Postives = 128/200 (64.00%), Query Frame = 1 
Query:    1 KFGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFNEATPQAELGYLNIGSRPTRRKSSTGIGHLRAIPWVFAWTQTRFVLPAWLGIGAGLKGVCDMGNTEDWKEMYKEWPFFQSTIDLIEMVLGKADTHIAKRYDEVLVSESRQELGAELRRELLTTEKFVLVVSGHEKL 600
            KFGLP+  +  L +Y  A+L A + PP  P++E W  +M+ +S  SC  YRS V ENPEF+ YF  ATP+ ELG L +GSRP +R+   G+  LRAIPW+FAWTQ R +LPAWLG GAGL+   D G  +    M ++WPFF + I ++EMV  KAD  +A+ YD+ LV +S   LG +LR +L    K VL ++  + L
Sbjct:  619 KFGLPEVTISSLALYAGAILEANLLPPPEPKKE-WIEVMDLLSDASCDMYRSYVRENPEFVRYFRAATPELELGKLPLGSRPAKRRPDGGVESLRAIPWIFAWTQNRLMLPAWLGAGAGLQRAIDAGKRDVLATMCRDWPFFSTRIGMLEMVFAKADLWLAEYYDQRLVDKSLWPLGQQLRDQLAADIKVVLAIANDDHL 817
[Close]
BLAST of FC932456 vs. ExPASy Swiss-Prot
Match: CAPP_EDWI9 (Phosphoenolpyruvate carboxylase OS=Edwardsiella ictaluri (strain 93-146) GN=ppc PE=3 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 1.504e-48
Identity = 91/200 (45.50%), Postives = 133/200 (66.50%), Query Frame = 1 
Query:    1 KFGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFNEATPQAELGYLNIGSRPTRRKSSTGIGHLRAIPWVFAWTQTRFVLPAWLGIGAGLKGVCDMGNTEDWKEMYKEWPFFQSTIDLIEMVLGKADTHIAKRYDEVLVSESRQELGAELRRELLTTEKFVLVVSGHEKL 600
            K GLP+ AV  L +YT+A+L A + PP  P++E WR++M+E+S+ SC  YR  + +NP+F+ YF  ATP+ ELG L +GSRP +R+ S G+  LRAIPW+FAWTQ R +LPAWLG G  L+     G+    + MY+ WPFF + ID++EMV  K+D  +A+ YD+ LV  +   LG ELR+++    + VL ++  + L
Sbjct:  618 KLGLPEIAVSSLTLYTSAILEANLLPPPAPKQE-WRDVMDELSQTSCALYRRYIRKNPDFVPYFRSATPELELGKLPLGSRPAKRRPSGGVESLRAIPWIFAWTQNRLMLPAWLGAGTALEEAMTEGHRGTLENMYRSWPFFTTRIDMLEMVFAKSDLWLAEYYDQRLVDPALWPLGTELRQQVQRDIQAVLTIADTDHL 816
[Close]
BLAST of FC932456 vs. ExPASy Swiss-Prot
Match: CAPP_AMAHP (Phosphoenolpyruvate carboxylase OS=Amaranthus hypochondriacus PE=2 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 1.557e-48
Identity = 96/199 (48.24%), Postives = 125/199 (62.81%), Query Frame = 1 
Query:    4 FGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFNEATPQAELGYLNIGSRPTRRKSSTGIGHLRAIPWVFAWTQTRFVLPAWLGIGAGLKGVC--DMGNTEDWKEMYKEWPFFQSTIDLIEMVLGKADTHIAKRYDEVLVSESRQELGAELRRELLTTEKFVLVVSGHE 594
            FG      R LE YT A L   + PP  P+ E WR LM+E++ I+ + YRS V + P F+ YF  ATP+ E G +NIGSRP +RK   GI  LRAIPW+F+WTQTRF LP WLG GA  K V   D+ N    K+MY +W FF+ TIDL+EMV  K D  IA  YD++LV +  +  G  LR+  L  +KF+L ++GH+
Sbjct:  675 FGEEHLCFRTLERYTAATLEHGIDPPTSPKPE-WRALMDEMAVITTKEYRSVVLQEPRFVEYFRSATPELEYGRMNIGSRPAKRKPGGGIETLRAIPWIFSWTQTRFHLPVWLGCGAAFKHVIEKDIKNLAMLKDMYNQWSFFRVTIDLLEMVFAKGDPGIAALYDKLLVKDELKPFGENLRKSYLEAQKFLLEIAGHK 872

HSP 2 Score: 25.0238 bits (53), Expect = 1.557e-48
Identity = 12/40 (30.00%), Postives = 20/40 (50.00%), Query Frame = 3 
Query:  618 LRRLIESRLPYLNPMNMLXVEILKRLRQDDDNHNSEMHCS 737
            L++++  R PY   +N+  V  LKR+R    +     H S
Sbjct:  881 LKQILRLRDPYTTTLNVFQVYTLKRIRDPSFHVTVRPHLS 920
[Close]
BLAST of FC932456 vs. ExPASy Swiss-Prot
Match: CAPP_ACIAD (Phosphoenolpyruvate carboxylase OS=Acinetobacter sp. (strain ADP1) GN=ppc PE=3 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.558e-48
Identity = 100/207 (48.31%), Postives = 129/207 (62.32%), Query Frame = 1 
Query:    1 KFGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFNEATPQAELGYLNIGSRPTRRKSSTGIGHLRAIPWVFAWTQTRFVLPAWLGIGAGLKGVCDMGNTEDWKEMYKEWPFFQSTIDLIEMVLGKADTHIAKRYDEVLV-SESRQELGAELRRELLTTEKFVLVVSGHEKLSENTTV 618
            KFGL   A++ LEIYT A L AT+ PP  P++E WR+LM +++ IS + YR TV ENP F+ Y    TP+ EL  L +GSRP +RK S GI  LRAIPWVFAWTQ R +LPAWLG GA +  V D        EM  EWP+FQ+ ID++EMVL K+D +IA  Y+  L  +E  + LG  LR+ L    + +L + G  KL     V
Sbjct:  630 KFGLEGVALQNLEIYTAATLEATLLPPPVPKQE-WRDLMHQMTDISVRVYRETVRENPHFVQYLRTVTPELELQMLPLGSRPAKRKVSGGIESLRAIPWVFAWTQIRLMLPAWLGTGAAINQVIDENKKAVLDEMLAEWPYFQTLIDMLEMVLSKSDANIALYYESHLTDNEDLKILGEMLRQRLNDAVQTLLSMKGESKLLSKNDV 835

HSP 2 Score: 28.1054 bits (61), Expect = 1.558e-48
Identity = 13/36 (36.11%), Postives = 22/36 (61.11%), Query Frame = 3 
Query:  618 LRRLIESRLPYLNPMNMLXVEILKRLRQDDDNHNSE 725
            L + ++ R PYL P+++L  E++KR R      N+E
Sbjct:  836 LDQAMQVRKPYLLPLHLLQAELMKRRRLYTAQSNAE 871
[Close]
BLAST of FC932456 vs. ExPASy Swiss-Prot
Match: CAPP_SOLTU (Phosphoenolpyruvate carboxylase OS=Solanum tuberosum GN=PPC1 PE=2 SV=2)

HSP 1 Score: 192.586 bits (488), Expect = 1.965e-48
Identity = 105/225 (46.67%), Postives = 137/225 (60.89%), Query Frame = 1 
Query:    4 FGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFNEATPQAELGYLNIGSRPTRRKSSTGIGHLRAIPWVFAWTQTRFVLPAWLGIGAGLKGVC--DMGNTEDWKEMYKEWPFFQSTIDLIEMVLGKADTHIAKRYDEVLVSESRQELGAELRRELLTTEKFVLVVSGHEKLSENTTV*GG*LR-ADSHISIL*IC 669
            FG      R L+ +T A L   M PP  P+ E WR LM+EI+ ++ + YRS V++ P F+ YF  ATP+ E G +NIGSRP++RK S GI  LRAIPW+FAWTQTRF LP WLG GA  K     D+ N    +EMY  WPFF+ TIDL+EMV  K D  IA  +D++LVSE     G  LR +   T+  +L ++GH+ L E        LR  DS+I+ L +C
Sbjct:  676 FGEEHLCFRTLQRFTAATLEHGMHPPVSPKPE-WRALMDEIAVVATEKYRSIVFKEPRFVEYFRLATPELEYGRMNIGSRPSKRKPSGGIESLRAIPWIFAWTQTRFHLPVWLGFGAAFKYAIEKDIKNLRMLQEMYNAWPFFRVTIDLVEMVFAKGDPGIAALFDKLLVSEDLWSFGELLRSKYEETKSLLLQIAGHKDLLEGDPYLKQRLRLRDSYITTLNVC 899
The following BLAST results are available for this feature:
BLAST of FC932456 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 229
Match NameE-valueIdentityDescription
CAPP_YERPP1.504e-4847.00Phosphoenolpyruvate carboxylase OS=Yersinia pestis... [more]
CAPP_YERPN1.504e-4847.00Phosphoenolpyruvate carboxylase OS=Yersinia pestis... [more]
CAPP_YERPE1.504e-4847.00Phosphoenolpyruvate carboxylase OS=Yersinia pestis... [more]
CAPP_YERPB1.504e-4847.00Phosphoenolpyruvate carboxylase OS=Yersinia pseudo... [more]
CAPP_YERPA1.504e-4847.00Phosphoenolpyruvate carboxylase OS=Yersinia pestis... [more]
CAPP_YERP31.504e-4847.00Phosphoenolpyruvate carboxylase OS=Yersinia pseudo... [more]
CAPP_EDWI91.504e-4845.50Phosphoenolpyruvate carboxylase OS=Edwardsiella ic... [more]
CAPP_AMAHP1.557e-4848.24Phosphoenolpyruvate carboxylase OS=Amaranthus hypo... [more]
CAPP_ACIAD1.558e-4848.31Phosphoenolpyruvate carboxylase OS=Acinetobacter s... [more]
CAPP_SOLTU1.965e-4846.67Phosphoenolpyruvate carboxylase OS=Solanum tuberos... [more]

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Properties
Property NameValue
Genbank descriptionC34208G08EF PostHarveN Citrus clementina cDNA clone C34208G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932456 ID=FC932456; Name=FC932456; organism=Citrus clementina; type=EST; length=750bp
AAGTTTGGGTTGCCACAGACAGCTGTTAGACAGCTAGAGATATACACAAC
TGCTGTGCTGCTTGCAACCATGCGACCTCCTCAACCTCCTCGAGAAGAAA
AATGGCGTAATCTCATGGAGGAGATCTCAAAAATTAGTTGCCAGAATTAC
CGGAGCACAGTCTATGAAAACCCAGAATTCCTTGCCTACTTCAACGAGGC
TACACCCCAGGCTGAACTAGGGTACCTTAATATAGGAAGCCGCCCCACAA
GAAGAAAGAGCTCAACAGGAATTGGCCATCTTCGAGCCATTCCATGGGTA
TTTGCATGGACCCAGACCAGGTTTGTCCTTCCAGCTTGGCTTGGAATCGG
AGCAGGGCTGAAGGGTGTTTGTGACATGGGAAATACTGAAGACTGGAAAG
AAATGTATAAAGAATGGCCCTTTTTCCAGTCTACCATAGATCTTATAGAG
ATGGTTTTAGGGAAGGCAGACACTCATATAGCCAAGCGCTATGATGAAGT
CCTTGTTTCAGAGAGTAGGCAAGAGCTTGGTGCTGAGCTAAGGAGGGAGC
TCTTAACAACTGAGAAGTTCGTACTTGTGGTTAGTGGGCATGAGAAGCTA
TCTGAGAATACCACAGTTTGAGGAGGCTGATTGAGAGCAGACTCCCATAT
CTCAATCCTATGAATATGTTGCANGTGGAGATACTGAAGAGATTGAGACA
GGATGATGATAACCATAACTCAGAGATGCATTGCTCATCACTATAAATGG
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