FC932456

Overview
NameFC932456
Unique NameFC932456
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length750
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932456 vs. ExPASy Swiss-Prot
Match: CAPP_PSEU2 (Phosphoenolpyruvate carboxylase OS=Pseudomonas syringae pv. syringae (strain B728a) GN=ppc PE=3 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 1.965e-48
Identity = 99/200 (49.50%), Postives = 130/200 (65.00%), Query Frame = 1
Query:    1 KFGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFNEATPQAELGYLNIGSRPTRRKSSTGIGHLRAIPWVFAWTQTRFVLPAWLGIGAGLKGVCDMGNTEDWKEMYKEWPFFQSTIDLIEMVLGKADTHIAKRYDEVLVSESRQELGAELRRELLTTEKFVLVVSGHEKL 600
            KFGLP  A + L +Y  AVL AT+ PP PP +  WR +M++++      YR+ V ENPEF+ YF +ATP+ ELG L +GSRP +R+   G+  LRAIPW+FAWTQTR +LPAWLG  A L    + G  E   +M ++WPFF++ ID++EMVL KAD  IA+ YDE LVS   Q LGA LR  L      VL ++G  +L
Sbjct:  619 KFGLPDIAEQNLNLYLAAVLEATLLPPPPP-QPAWRTMMDQMADDGVSAYRAVVRENPEFVEYFRQATPEQELGRLPLGSRPAKRREG-GVESLRAIPWIFAWTQTRLMLPAWLGWEAALSKALERGEGEVLAQMREQWPFFRTRIDMLEMVLAKADADIARLYDERLVSAELQHLGAHLRDLLSQACNVVLGLTGQTQL 816          
BLAST of FC932456 vs. ExPASy Swiss-Prot
Match: CAPP_ACTP2 (Phosphoenolpyruvate carboxylase OS=Actinobacillus pleuropneumoniae serotype 5b (strain L20) GN=ppc PE=3 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 2.031e-48
Identity = 89/195 (45.64%), Postives = 126/195 (64.62%), Query Frame = 1
Query:    1 KFGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFNEATPQAELGYLNIGSRPTRRKSSTGIGHLRAIPWVFAWTQTRFVLPAWLGIGAGLKGVCDMGNTEDWKEMYKEWPFFQSTIDLIEMVLGKADTHIAKRYDEVLVSESRQELGAELRRELLTTEKFVLVVS 585
            K GLP  AV  L +Y +A+L A + PP  P++ KWR++M++ + ISC+ YR  V   P+F+ YF  ATP+ ELG L +GSRP++R  + G+  LRAIPW+FAW Q R +LPAWLG GA L+ + + G     KEM  EWPFF + I ++EMV  KAD  +A+ YD+ LV++    LG  LR +L    + VL ++
Sbjct:  619 KLGLPAVAVETLNLYASAILEANLLPPPEPKQ-KWRDIMDKGAAISCEIYRGVVRGEPDFVPYFRSATPEQELGKLPLGSRPSKRNPNGGVESLRAIPWIFAWMQNRLMLPAWLGAGAALRQMIEQGEESTLKEMCNEWPFFSTRIGMLEMVFSKADLWLAEHYDQRLVAKELHRLGKTLRAQLSADIQTVLTLA 812          

HSP 2 Score: 27.7202 bits (60), Expect = 2.031e-48
Identity = 12/33 (36.36%), Postives = 21/33 (63.64%), Query Frame = 3
Query:  630 IESRLPYLNPMNMLXVEILKRLRQDDDNHNSEM 728
            I  R  Y +P+N+L VE+L+RLR   +  + ++
Sbjct:  828 IALRNVYTDPLNLLQVELLQRLRSQGEVRDPQL 860          
BLAST of FC932456 vs. ExPASy Swiss-Prot
Match: CAPP_PSESM (Phosphoenolpyruvate carboxylase OS=Pseudomonas syringae pv. tomato GN=ppc PE=3 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 3.351e-48
Identity = 98/200 (49.00%), Postives = 130/200 (65.00%), Query Frame = 1
Query:    1 KFGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFNEATPQAELGYLNIGSRPTRRKSSTGIGHLRAIPWVFAWTQTRFVLPAWLGIGAGLKGVCDMGNTEDWKEMYKEWPFFQSTIDLIEMVLGKADTHIAKRYDEVLVSESRQELGAELRRELLTTEKFVLVVSGHEKL 600
            KFGLP  A + L +Y  AVL AT+ PP PP +  WR +M++++      YR+ V ENPEF+ YF +ATP+ ELG L +GSRP +R+   G+  LRAIPW+FAWTQTR +LPAWLG  A L    + G  E   +M ++WPFF++ ID++EMVL KAD  IA+ YDE LV+   Q LGA LR  L      VL ++G  +L
Sbjct:  619 KFGLPDIAEQNLNLYLAAVLEATLLPPPPP-QPAWRTMMDQMASDGVSAYRAVVRENPEFVEYFRQATPEQELGRLPLGSRPAKRREG-GVESLRAIPWIFAWTQTRLMLPAWLGWEAALSKALERGEGEVLAQMREQWPFFRTRIDMLEMVLAKADADIARLYDERLVTAELQHLGAHLRDLLSQACNVVLGLTGQTQL 816          
BLAST of FC932456 vs. ExPASy Swiss-Prot
Match: CAPP_SALTY (Phosphoenolpyruvate carboxylase OS=Salmonella typhimurium GN=ppc PE=3 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 4.377e-48
Identity = 91/200 (45.50%), Postives = 131/200 (65.50%), Query Frame = 1
Query:    1 KFGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFNEATPQAELGYLNIGSRPTRRKSSTGIGHLRAIPWVFAWTQTRFVLPAWLGIGAGLKGVCDMGNTEDWKEMYKEWPFFQSTIDLIEMVLGKADTHIAKRYDEVLVSESRQELGAELRRELLTTEKFVLVVSGHEKL 600
            K+GLP+  V  L +YT+A+L A + PP  P++  WR++M+E+S ISC+ YR  V EN +F+ YF  ATP+ ELG L +GSRP +R+ + G+  LRAIPW+FAWTQ R +LPAWLG G  L+ V + G   + + M ++WPFF + + ++EMV  KAD  +A  YD+ LV+++   LG ELR  L    K VL ++    L
Sbjct:  620 KYGLPEVTVSSLSLYTSAILEANLLPPPEPKDS-WRHIMDELSVISCETYRGYVRENKDFVPYFRSATPEQELGKLPLGSRPAKRRPTGGVESLRAIPWIFAWTQNRLMLPAWLGAGTALQKVVEDGKQSELEAMCRDWPFFSTRLGMLEMVFSKADLWLADYYDQRLVAKTLWPLGKELRDLLEEDIKVVLAIANDSHL 818          
BLAST of FC932456 vs. ExPASy Swiss-Prot
Match: CAPP_SALTI (Phosphoenolpyruvate carboxylase OS=Salmonella typhi GN=ppc PE=3 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 4.377e-48
Identity = 91/200 (45.50%), Postives = 131/200 (65.50%), Query Frame = 1
Query:    1 KFGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFNEATPQAELGYLNIGSRPTRRKSSTGIGHLRAIPWVFAWTQTRFVLPAWLGIGAGLKGVCDMGNTEDWKEMYKEWPFFQSTIDLIEMVLGKADTHIAKRYDEVLVSESRQELGAELRRELLTTEKFVLVVSGHEKL 600
            K+GLP+  V  L +YT+A+L A + PP  P++  WR++M+E+S ISC+ YR  V EN +F+ YF  ATP+ ELG L +GSRP +R+ + G+  LRAIPW+FAWTQ R +LPAWLG G  L+ V + G   + + M ++WPFF + + ++EMV  KAD  +A  YD+ LV+++   LG ELR  L    K VL ++    L
Sbjct:  620 KYGLPEVTVSSLSLYTSAILEANLLPPPEPKDS-WRHIMDELSVISCETYRGYVRENKDFVPYFRSATPEQELGKLPLGSRPAKRRPTGGVESLRAIPWIFAWTQNRLMLPAWLGAGTALQKVVEDGKQSELEAMCRDWPFFSTRLGMLEMVFSKADLWLADYYDQRLVAKTLWPLGKELRDLLEEDIKVVLAIANDSHL 818          
BLAST of FC932456 vs. ExPASy Swiss-Prot
Match: CAPP_SALSV (Phosphoenolpyruvate carboxylase OS=Salmonella schwarzengrund (strain CVM19633) GN=ppc PE=3 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 4.377e-48
Identity = 91/200 (45.50%), Postives = 131/200 (65.50%), Query Frame = 1
Query:    1 KFGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFNEATPQAELGYLNIGSRPTRRKSSTGIGHLRAIPWVFAWTQTRFVLPAWLGIGAGLKGVCDMGNTEDWKEMYKEWPFFQSTIDLIEMVLGKADTHIAKRYDEVLVSESRQELGAELRRELLTTEKFVLVVSGHEKL 600
            K+GLP+  V  L +YT+A+L A + PP  P++  WR++M+E+S ISC+ YR  V EN +F+ YF  ATP+ ELG L +GSRP +R+ + G+  LRAIPW+FAWTQ R +LPAWLG G  L+ V + G   + + M ++WPFF + + ++EMV  KAD  +A  YD+ LV+++   LG ELR  L    K VL ++    L
Sbjct:  620 KYGLPEVTVSSLSLYTSAILEANLLPPPEPKDS-WRHIMDELSVISCETYRGYVRENKDFVPYFRSATPEQELGKLPLGSRPAKRRPTGGVESLRAIPWIFAWTQNRLMLPAWLGAGTALQKVVEDGKQSELEAMCRDWPFFSTRLGMLEMVFSKADLWLADYYDQRLVAKTLWPLGKELRDLLEEDIKVVLAIANDSHL 818          
BLAST of FC932456 vs. ExPASy Swiss-Prot
Match: CAPP_SALPK (Phosphoenolpyruvate carboxylase OS=Salmonella paratyphi A (strain AKU_12601) GN=ppc PE=3 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 4.377e-48
Identity = 91/200 (45.50%), Postives = 131/200 (65.50%), Query Frame = 1
Query:    1 KFGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFNEATPQAELGYLNIGSRPTRRKSSTGIGHLRAIPWVFAWTQTRFVLPAWLGIGAGLKGVCDMGNTEDWKEMYKEWPFFQSTIDLIEMVLGKADTHIAKRYDEVLVSESRQELGAELRRELLTTEKFVLVVSGHEKL 600
            K+GLP+  V  L +YT+A+L A + PP  P++  WR++M+E+S ISC+ YR  V EN +F+ YF  ATP+ ELG L +GSRP +R+ + G+  LRAIPW+FAWTQ R +LPAWLG G  L+ V + G   + + M ++WPFF + + ++EMV  KAD  +A  YD+ LV+++   LG ELR  L    K VL ++    L
Sbjct:  620 KYGLPEVTVSSLSLYTSAILEANLLPPPEPKDS-WRHIMDELSVISCETYRGYVRENKDFVPYFRSATPEQELGKLPLGSRPAKRRPTGGVESLRAIPWIFAWTQNRLMLPAWLGAGTALQKVVEDGKQSELEAMCRDWPFFSTRLGMLEMVFSKADLWLADYYDQRLVAKTLWPLGKELRDLLEEDIKVVLAIANDSHL 818          
BLAST of FC932456 vs. ExPASy Swiss-Prot
Match: CAPP_SALPC (Phosphoenolpyruvate carboxylase OS=Salmonella paratyphi C (strain RKS4594) GN=ppc PE=3 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 4.377e-48
Identity = 91/200 (45.50%), Postives = 131/200 (65.50%), Query Frame = 1
Query:    1 KFGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFNEATPQAELGYLNIGSRPTRRKSSTGIGHLRAIPWVFAWTQTRFVLPAWLGIGAGLKGVCDMGNTEDWKEMYKEWPFFQSTIDLIEMVLGKADTHIAKRYDEVLVSESRQELGAELRRELLTTEKFVLVVSGHEKL 600
            K+GLP+  V  L +YT+A+L A + PP  P++  WR++M+E+S ISC+ YR  V EN +F+ YF  ATP+ ELG L +GSRP +R+ + G+  LRAIPW+FAWTQ R +LPAWLG G  L+ V + G   + + M ++WPFF + + ++EMV  KAD  +A  YD+ LV+++   LG ELR  L    K VL ++    L
Sbjct:  620 KYGLPEVTVSSLSLYTSAILEANLLPPPEPKDS-WRHIMDELSVISCETYRGYVRENKDFVPYFRSATPEQELGKLPLGSRPAKRRPTGGVESLRAIPWIFAWTQNRLMLPAWLGAGTALQKVVEDGKQSELEAMCRDWPFFSTRLGMLEMVFSKADLWLADYYDQRLVAKTLWPLGKELRDLLEEDIKVVLAIANDSHL 818          
BLAST of FC932456 vs. ExPASy Swiss-Prot
Match: CAPP_SALPB (Phosphoenolpyruvate carboxylase OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=ppc PE=3 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 4.377e-48
Identity = 91/200 (45.50%), Postives = 131/200 (65.50%), Query Frame = 1
Query:    1 KFGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFNEATPQAELGYLNIGSRPTRRKSSTGIGHLRAIPWVFAWTQTRFVLPAWLGIGAGLKGVCDMGNTEDWKEMYKEWPFFQSTIDLIEMVLGKADTHIAKRYDEVLVSESRQELGAELRRELLTTEKFVLVVSGHEKL 600
            K+GLP+  V  L +YT+A+L A + PP  P++  WR++M+E+S ISC+ YR  V EN +F+ YF  ATP+ ELG L +GSRP +R+ + G+  LRAIPW+FAWTQ R +LPAWLG G  L+ V + G   + + M ++WPFF + + ++EMV  KAD  +A  YD+ LV+++   LG ELR  L    K VL ++    L
Sbjct:  620 KYGLPEVTVSSLSLYTSAILEANLLPPPEPKDS-WRHIMDELSVISCETYRGYVRENKDFVPYFRSATPEQELGKLPLGSRPAKRRPTGGVESLRAIPWIFAWTQNRLMLPAWLGAGTALQKVVEDGKQSELEAMCRDWPFFSTRLGMLEMVFSKADLWLADYYDQRLVAKTLWPLGKELRDLLEEDIKVVLAIANDSHL 818          
BLAST of FC932456 vs. ExPASy Swiss-Prot
Match: CAPP_SALPA (Phosphoenolpyruvate carboxylase OS=Salmonella paratyphi A GN=ppc PE=3 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 4.377e-48
Identity = 91/200 (45.50%), Postives = 131/200 (65.50%), Query Frame = 1
Query:    1 KFGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFNEATPQAELGYLNIGSRPTRRKSSTGIGHLRAIPWVFAWTQTRFVLPAWLGIGAGLKGVCDMGNTEDWKEMYKEWPFFQSTIDLIEMVLGKADTHIAKRYDEVLVSESRQELGAELRRELLTTEKFVLVVSGHEKL 600
            K+GLP+  V  L +YT+A+L A + PP  P++  WR++M+E+S ISC+ YR  V EN +F+ YF  ATP+ ELG L +GSRP +R+ + G+  LRAIPW+FAWTQ R +LPAWLG G  L+ V + G   + + M ++WPFF + + ++EMV  KAD  +A  YD+ LV+++   LG ELR  L    K VL ++    L
Sbjct:  620 KYGLPEVTVSSLSLYTSAILEANLLPPPEPKDS-WRHIMDELSVISCETYRGYVRENKDFVPYFRSATPEQELGKLPLGSRPAKRRPTGGVESLRAIPWIFAWTQNRLMLPAWLGAGTALQKVVEDGKQSELEAMCRDWPFFSTRLGMLEMVFSKADLWLADYYDQRLVAKTLWPLGKELRDLLEEDIKVVLAIANDSHL 818          
The following BLAST results are available for this feature:
BLAST of FC932456 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 229
Match NameE-valueIdentityDescription
CAPP_PSEU21.965e-4849.50Phosphoenolpyruvate carboxylase OS=Pseudomonas syr... [more]
CAPP_ACTP22.031e-4845.64Phosphoenolpyruvate carboxylase OS=Actinobacillus ... [more]
CAPP_PSESM3.351e-4849.00Phosphoenolpyruvate carboxylase OS=Pseudomonas syr... [more]
CAPP_SALTY4.377e-4845.50Phosphoenolpyruvate carboxylase OS=Salmonella typh... [more]
CAPP_SALTI4.377e-4845.50Phosphoenolpyruvate carboxylase OS=Salmonella typh... [more]
CAPP_SALSV4.377e-4845.50Phosphoenolpyruvate carboxylase OS=Salmonella schw... [more]
CAPP_SALPK4.377e-4845.50Phosphoenolpyruvate carboxylase OS=Salmonella para... [more]
CAPP_SALPC4.377e-4845.50Phosphoenolpyruvate carboxylase OS=Salmonella para... [more]
CAPP_SALPB4.377e-4845.50Phosphoenolpyruvate carboxylase OS=Salmonella para... [more]
CAPP_SALPA4.377e-4845.50Phosphoenolpyruvate carboxylase OS=Salmonella para... [more]

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Properties
Property NameValue
Genbank descriptionC34208G08EF PostHarveN Citrus clementina cDNA clone C34208G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932456 ID=FC932456; Name=FC932456; organism=Citrus clementina; type=EST; length=750bp
AAGTTTGGGTTGCCACAGACAGCTGTTAGACAGCTAGAGATATACACAAC
TGCTGTGCTGCTTGCAACCATGCGACCTCCTCAACCTCCTCGAGAAGAAA
AATGGCGTAATCTCATGGAGGAGATCTCAAAAATTAGTTGCCAGAATTAC
CGGAGCACAGTCTATGAAAACCCAGAATTCCTTGCCTACTTCAACGAGGC
TACACCCCAGGCTGAACTAGGGTACCTTAATATAGGAAGCCGCCCCACAA
GAAGAAAGAGCTCAACAGGAATTGGCCATCTTCGAGCCATTCCATGGGTA
TTTGCATGGACCCAGACCAGGTTTGTCCTTCCAGCTTGGCTTGGAATCGG
AGCAGGGCTGAAGGGTGTTTGTGACATGGGAAATACTGAAGACTGGAAAG
AAATGTATAAAGAATGGCCCTTTTTCCAGTCTACCATAGATCTTATAGAG
ATGGTTTTAGGGAAGGCAGACACTCATATAGCCAAGCGCTATGATGAAGT
CCTTGTTTCAGAGAGTAGGCAAGAGCTTGGTGCTGAGCTAAGGAGGGAGC
TCTTAACAACTGAGAAGTTCGTACTTGTGGTTAGTGGGCATGAGAAGCTA
TCTGAGAATACCACAGTTTGAGGAGGCTGATTGAGAGCAGACTCCCATAT
CTCAATCCTATGAATATGTTGCANGTGGAGATACTGAAGAGATTGAGACA
GGATGATGATAACCATAACTCAGAGATGCATTGCTCATCACTATAAATGG
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