FC932456

Overview
NameFC932456
Unique NameFC932456
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length750
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932456 vs. ExPASy Swiss-Prot
Match: CAPP_HAES1 (Phosphoenolpyruvate carboxylase OS=Haemophilus somnus (strain 129Pt) GN=ppc PE=3 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 5.860e-48
Identity = 88/200 (44.00%), Postives = 123/200 (61.50%), Query Frame = 1
Query:    1 KFGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFNEATPQAELGYLNIGSRPTRRKSSTGIGHLRAIPWVFAWTQTRFVLPAWLGIGAGLKGVCDMGNTEDWKEMYKEWPFFQSTIDLIEMVLGKADTHIAKRYDEVLVSESRQELGAELRRELLTTEKFVLVVSGHEKL 600
            K GLP  AV   ++Y +A+L A + PP  P+E  WR +M E+S  SC  YRS V  + +F+ YF  ATP+ EL  L +GSRP++R  + G+  LRAIPW+FAW Q R +LPAWLG  A ++   + GN E  +EM K WPFF + I ++EMV  K DT +++ YD  LV +    LG  LR +L    K +L +S  ++L
Sbjct:  619 KLGLPAVAVNSFDLYASAILEANLLPPPEPKES-WRAIMNELSDSSCNIYRSVVRGDKDFVPYFRSATPEQELSKLPLGSRPSKRNPNGGVESLRAIPWIFAWMQNRLMLPAWLGASASIRQSIEKGNKETIEEMCKNWPFFSTRIGMLEMVFSKTDTWLSEHYDLNLVKKELWYLGQSLREQLQADIKTILSLSHEDEL 817          

HSP 2 Score: 33.113 bits (74), Expect = 5.860e-48
Identity = 12/27 (44.44%), Postives = 22/27 (81.48%), Query Frame = 3
Query:  648 YLNPMNMLXVEILKRLRQDDDNHNSEM 728
            Y +P+N+L VE+L+RLR++ +N N ++
Sbjct:  834 YTDPLNLLQVELLRRLRENPENPNPDV 860          
BLAST of FC932456 vs. ExPASy Swiss-Prot
Match: CAPP_PASMU (Phosphoenolpyruvate carboxylase OS=Pasteurella multocida GN=ppc PE=3 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 7.638e-48
Identity = 88/200 (44.00%), Postives = 123/200 (61.50%), Query Frame = 1
Query:    1 KFGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFNEATPQAELGYLNIGSRPTRRKSSTGIGHLRAIPWVFAWTQTRFVLPAWLGIGAGLKGVCDMGNTEDWKEMYKEWPFFQSTIDLIEMVLGKADTHIAKRYDEVLVSESRQELGAELRRELLTTEKFVLVVSGHEKL 600
            K GLP  AV  L +Y +A+L A + PP  P+ + WR +M+E+S ISCQ YR  V    +F+ YF  ATP+ EL  L +GSRP +R  + G+  LRAIPW+FAW Q R +LPAWLG GA L+   + G     ++M K WPFF + I ++EMV  K DT +++ YD+ LV  +   LG  LR +L    + VL +S  ++L
Sbjct:  619 KLGLPAVAVESLGLYASAILEANLLPPPEPKAQ-WRTVMDELSTISCQIYRDVVRGEKDFVPYFRAATPEQELSKLPLGSRPAKRNPNGGVESLRAIPWIFAWMQNRLMLPAWLGAGASLRQAIEKGQKTVIEDMCKTWPFFSTRIGMLEMVFSKTDTWLSEHYDQHLVDPALWYLGESLREQLKQDIQTVLSLSHEDQL 817          

HSP 2 Score: 34.6538 bits (78), Expect = 7.638e-48
Identity = 15/33 (45.45%), Postives = 24/33 (72.73%), Query Frame = 3
Query:  630 IESRLPYLNPMNMLXVEILKRLRQDDDNHNSEM 728
            I  R  Y +P+N+L VE+L+RLR++ DN N ++
Sbjct:  828 IALRNVYTDPLNLLQVELLRRLRRNPDNPNPDV 860          
BLAST of FC932456 vs. ExPASy Swiss-Prot
Match: CAPP_ESCF3 (Phosphoenolpyruvate carboxylase OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=ppc PE=3 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 1.274e-47
Identity = 92/200 (46.00%), Postives = 128/200 (64.00%), Query Frame = 1
Query:    1 KFGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFNEATPQAELGYLNIGSRPTRRKSSTGIGHLRAIPWVFAWTQTRFVLPAWLGIGAGLKGVCDMGNTEDWKEMYKEWPFFQSTIDLIEMVLGKADTHIAKRYDEVLVSESRQELGAELRRELLTTEKFVLVVSGHEKL 600
            K+GLP+  V  L +YT A+L A + PP  P+E  WR +M+E+S ISC  YR  V EN +F+ YF  ATP+ ELG L +GSRP +R+ + G+  LRAIPW+FAWTQ R +LPAWLG G  L+ V + G   + + M ++WPFF + + ++EMV  KAD  +A+ YD+ LV++    LG ELR  L    K VL ++    L
Sbjct:  620 KYGLPEITVSSLSLYTGAILEANLLPPPEPKES-WRRIMDELSVISCDVYRGYVRENKDFVPYFRSATPEQELGKLPLGSRPAKRRPTGGVESLRAIPWIFAWTQNRLMLPAWLGAGTALQKVVEDGKQSELETMCRDWPFFSTRLGMLEMVFAKADLWLAEYYDQRLVAKELWPLGKELRNLLEEDIKVVLAIANDSHL 818          
BLAST of FC932456 vs. ExPASy Swiss-Prot
Match: CAPP1_FLAPR (Phosphoenolpyruvate carboxylase OS=Flaveria pringlei GN=PPCA1 PE=2 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 1.274e-47
Identity = 103/225 (45.78%), Postives = 135/225 (60.00%), Query Frame = 1
Query:    4 FGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFNEATPQAELGYLNIGSRPTRRKSSTGIGHLRAIPWVFAWTQTRFVLPAWLGIGAGLKGVC--DMGNTEDWKEMYKEWPFFQSTIDLIEMVLGKADTHIAKRYDEVLVSESRQELGAELRRELLTTEKFVLVVSGHEKLSENTTV*GG*LR-ADSHISIL*IC 669
            FG      R L+ +  A L   M PP  PR E WR LM++++ ++ + YRS V++ P F+ YF  ATP+ E G +NIGSRP++RK S GI  LRAIPW+FAWTQTRF LP WLG GA  K     D  N +  +EMYK WPFF+ TIDL+EMV  K D  IA   D++LVSE     G  LR     T+ ++L ++GH  L E        +R  DS+I+ L +C
Sbjct:  676 FGEEHLCFRTLQRFCAATLEHGMNPPISPRPE-WRELMDQMAVVATEEYRSIVFKEPRFVEYFRLATPELEYGRMNIGSRPSKRKPSGGIESLRAIPWIFAWTQTRFHLPVWLGFGAAFKHAIKKDSKNLQMLQEMYKTWPFFRVTIDLVEMVFAKGDPGIAALNDKLLVSEDLWPFGESLRANYEETKDYLLKIAGHRDLLEGDPYLKQRIRLRDSYITTLNVC 899          
BLAST of FC932456 vs. ExPASy Swiss-Prot
Match: CAPP2_MESCR (Phosphoenolpyruvate carboxylase 2 OS=Mesembryanthemum crystallinum GN=PPC2 PE=3 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 1.663e-47
Identity = 104/222 (46.85%), Postives = 136/222 (61.26%), Query Frame = 1
Query:    4 FGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFNEATPQAELGYLNIGSRPTRRKSSTGIGHLRAIPWVFAWTQTRFVLPAWLGIGA--GLKGVCDMGNTEDWKEMYKEWPFFQSTIDLIEMVLGKADTHIAKRYDEVLVSESRQELGAELRRELLTTEKFVLVVSGHEKLSENTTV*GG*LR-ADSHISIL 660
            FG      R L+ +T A L   M PP  P+ E WR L++EI+ ++ + YRS V++ P F+ YF  ATP+ E G +NIGSRP++RK S GI  LRAIPW+FAWTQTRF LP WLG GA  G     D+ N    ++MY EWPFF+ TIDL+EMV  K D  IA  YD++LVSE     G  LR +   T+  +L ++GH+ L E        LR  DS+I+ L
Sbjct:  668 FGEEHLCFRTLQRFTAATLEHGMHPPISPKPE-WRALLDEIAVVATEKYRSIVFKEPRFVEYFRLATPELEYGRMNIGSRPSKRKPSGGIESLRAIPWIFAWTQTRFHLPVWLGFGAAFGYAIQKDVKNLSVLQKMYNEWPFFRVTIDLVEMVFAKGDPGIAALYDKLLVSEELWPFGERLRADFEETKGLILKIAGHKDLLEGDPYLRQRLRLRDSYITTL 888          
BLAST of FC932456 vs. ExPASy Swiss-Prot
Match: CAPP1_MAIZE (Phosphoenolpyruvate carboxylase 1 OS=Zea mays GN=PEP1 PE=1 SV=2)

HSP 1 Score: 189.504 bits (480), Expect = 1.663e-47
Identity = 93/203 (45.81%), Postives = 130/203 (64.04%), Query Frame = 1
Query:    4 FGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFNEATPQAELGYLNIGSRPTRRKSSTGIGHLRAIPWVFAWTQTRFVLPAWLGIGAGLKGVC--DMGNTEDWKEMYKEWPFFQSTIDLIEMVLGKADTHIAKRYDEVLVSESRQELGAELRRELLTTEKFVLVVSGHEKLSE 606
            FG      + L+ +T A L   M PP  P+ E WR LM+E++ ++ + YRS V +   F+ YF  ATP+ E G +NIGSRP +R+   GI  LRAIPW+F+WTQTRF LP WLG+GA  K     D+ N +  KEMY EWPFF+ T+DL+EMV  K D  IA  YDE+LV+E  +  G +LR + + T++ +L ++GH+ + E
Sbjct:  681 FGEEHLCFQTLQRFTAATLEHGMHPPVSPKPE-WRKLMDEMAVVATEEYRSVVVKEARFVEYFRSATPETEYGRMNIGSRPAKRRPGGGITTLRAIPWIFSWTQTRFHLPVWLGVGAAFKFAIDKDVRNFQVLKEMYNEWPFFRVTLDLLEMVFAKGDPGIAGLYDELLVAEELKPFGKQLRDKYVETQQLLLQIAGHKDILE 882          
BLAST of FC932456 vs. ExPASy Swiss-Prot
Match: CAPP_CITK8 (Phosphoenolpyruvate carboxylase OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=ppc PE=3 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 2.172e-47
Identity = 90/200 (45.00%), Postives = 128/200 (64.00%), Query Frame = 1
Query:    1 KFGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFNEATPQAELGYLNIGSRPTRRKSSTGIGHLRAIPWVFAWTQTRFVLPAWLGIGAGLKGVCDMGNTEDWKEMYKEWPFFQSTIDLIEMVLGKADTHIAKRYDEVLVSESRQELGAELRRELLTTEKFVLVVSGHEKL 600
            K+GLP+  +  L +YT A+L A + PP  P+   WR++M+E+S ISC  YR  V EN +F+ YF  ATP+ ELG L +GSRP +R+ + G+  LRAIPW+FAWTQ R +LPAWLG G  L+ V + G   + + M ++WPFF + + ++EMV  KAD  +A+ YD+ LV ++   LG ELR  L    K VL ++    L
Sbjct:  620 KYGLPEVTISSLSLYTGAILEANLLPPPEPKNS-WRHIMDELSVISCDLYRGYVRENKDFVPYFRSATPEQELGKLPLGSRPAKRRPTGGVESLRAIPWIFAWTQNRLMLPAWLGAGTALQKVVEDGKQSELEAMCRDWPFFSTRLGMLEMVFSKADLWLAEYYDQRLVKKALWPLGEELRNLLAEDIKVVLAIANDSHL 818          
BLAST of FC932456 vs. ExPASy Swiss-Prot
Match: CAPP_PHOLL (Phosphoenolpyruvate carboxylase OS=Photorhabdus luminescens subsp. laumondii GN=ppc PE=3 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 2.837e-47
Identity = 92/200 (46.00%), Postives = 128/200 (64.00%), Query Frame = 1
Query:    1 KFGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFNEATPQAELGYLNIGSRPTRRKSSTGIGHLRAIPWVFAWTQTRFVLPAWLGIGAGLKGVCDMGNTEDWKEMYKEWPFFQSTIDLIEMVLGKADTHIAKRYDEVLVSESRQELGAELRRELLTTEKFVLVVSGHEKL 600
            KFGLPQ  +  L +Y +A+L A + PP  P+ E W  +M+ +S +SC+ YR  V E P+F+ YF  ATP+ EL  L +GSRP +R  + G+  LRAIPW+FAWTQ R +LPAWLG GA L+ V + G  +   EM ++WPFF + I ++EMV  KAD  +A+ YD  LV ++   LG +LR++L    K VL +S  E L
Sbjct:  619 KFGLPQVTISSLALYASAILEANLLPPPEPKPE-WHQVMDTLSDVSCKMYRDYVREQPDFVPYFRAATPEQELAKLPLGSRPAKRHPAGGVESLRAIPWIFAWTQNRLMLPAWLGAGAALQQVVNDGKQDVLAEMCRDWPFFTTRIGMLEMVFAKADLWLAEYYDHRLVDKNLWPLGQKLRKQLSADIKTVLAISKDEHL 817          
BLAST of FC932456 vs. ExPASy Swiss-Prot
Match: CAPP_ENT38 (Phosphoenolpyruvate carboxylase OS=Enterobacter sp. (strain 638) GN=ppc PE=3 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 2.837e-47
Identity = 90/200 (45.00%), Postives = 128/200 (64.00%), Query Frame = 1
Query:    1 KFGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFNEATPQAELGYLNIGSRPTRRKSSTGIGHLRAIPWVFAWTQTRFVLPAWLGIGAGLKGVCDMGNTEDWKEMYKEWPFFQSTIDLIEMVLGKADTHIAKRYDEVLVSESRQELGAELRRELLTTEKFVLVVSGHEKL 600
            K+GLP+  +  L +YT+A+L A + PP  P++  WR++M+E+S ISC  YR  V EN +F+ YF  ATP+ ELG L +GSRP +R+ + G+  LRAIPW+FAWTQ R +LPAWLG GA L+ V + G   + + M ++WPFF + + ++EMV  K D  +A+ YD+ LV      LG ELR  L    K VL ++    L
Sbjct:  620 KYGLPEVTISSLSLYTSAILEANLLPPPEPKDA-WRHIMDELSDISCDLYRGYVRENKDFVPYFRSATPEQELGKLPLGSRPAKRRPTGGVESLRAIPWIFAWTQNRLMLPAWLGAGAALQKVVEDGKQTELETMCRDWPFFSTRLGMLEMVFSKVDLWLAEYYDQRLVKPELWALGKELRELLEGDIKIVLAIANDSHL 818          
BLAST of FC932456 vs. ExPASy Swiss-Prot
Match: CAPP_SHISS (Phosphoenolpyruvate carboxylase OS=Shigella sonnei (strain Ss046) GN=ppc PE=3 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 6.320e-47
Identity = 91/200 (45.50%), Postives = 127/200 (63.50%), Query Frame = 1
Query:    1 KFGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFNEATPQAELGYLNIGSRPTRRKSSTGIGHLRAIPWVFAWTQTRFVLPAWLGIGAGLKGVCDMGNTEDWKEMYKEWPFFQSTIDLIEMVLGKADTHIAKRYDEVLVSESRQELGAELRRELLTTEKFVLVVSGHEKL 600
            K+GLP+  V  L +YT A+L A + PP  P+E  WR +M+E+S ISC  YR  V EN +F+ YF  ATP+ ELG L +GSRP +R+ + G+  LRAIPW+FAWTQ R +LPAWLG G  L+ V + G   + + M ++WPFF + + ++EMV  KAD  +A+ YD+ LV ++   LG ELR       K VL ++    L
Sbjct:  620 KYGLPEITVSSLSLYTGAILEANLLPPPEPKES-WRRIMDELSVISCDLYRGYVRENKDFVPYFRSATPEQELGKLPLGSRPAKRRPTGGVESLRAIPWIFAWTQNRLMLPAWLGAGTALQKVVEDGKQSELEAMCRDWPFFSTRLGMLEMVFAKADLWLAEYYDQRLVDKALWPLGKELRNLQEEDIKVVLAIANDSHL 818          
The following BLAST results are available for this feature:
BLAST of FC932456 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 229
Match NameE-valueIdentityDescription
CAPP_HAES15.860e-4844.00Phosphoenolpyruvate carboxylase OS=Haemophilus som... [more]
CAPP_PASMU7.638e-4844.00Phosphoenolpyruvate carboxylase OS=Pasteurella mul... [more]
CAPP_ESCF31.274e-4746.00Phosphoenolpyruvate carboxylase OS=Escherichia fer... [more]
CAPP1_FLAPR1.274e-4745.78Phosphoenolpyruvate carboxylase OS=Flaveria pringl... [more]
CAPP2_MESCR1.663e-4746.85Phosphoenolpyruvate carboxylase 2 OS=Mesembryanthe... [more]
CAPP1_MAIZE1.663e-4745.81Phosphoenolpyruvate carboxylase 1 OS=Zea mays GN=P... [more]
CAPP_CITK82.172e-4745.00Phosphoenolpyruvate carboxylase OS=Citrobacter kos... [more]
CAPP_PHOLL2.837e-4746.00Phosphoenolpyruvate carboxylase OS=Photorhabdus lu... [more]
CAPP_ENT382.837e-4745.00Phosphoenolpyruvate carboxylase OS=Enterobacter sp... [more]
CAPP_SHISS6.320e-4745.50Phosphoenolpyruvate carboxylase OS=Shigella sonnei... [more]

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Properties
Property NameValue
Genbank descriptionC34208G08EF PostHarveN Citrus clementina cDNA clone C34208G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932456 ID=FC932456; Name=FC932456; organism=Citrus clementina; type=EST; length=750bp
AAGTTTGGGTTGCCACAGACAGCTGTTAGACAGCTAGAGATATACACAAC
TGCTGTGCTGCTTGCAACCATGCGACCTCCTCAACCTCCTCGAGAAGAAA
AATGGCGTAATCTCATGGAGGAGATCTCAAAAATTAGTTGCCAGAATTAC
CGGAGCACAGTCTATGAAAACCCAGAATTCCTTGCCTACTTCAACGAGGC
TACACCCCAGGCTGAACTAGGGTACCTTAATATAGGAAGCCGCCCCACAA
GAAGAAAGAGCTCAACAGGAATTGGCCATCTTCGAGCCATTCCATGGGTA
TTTGCATGGACCCAGACCAGGTTTGTCCTTCCAGCTTGGCTTGGAATCGG
AGCAGGGCTGAAGGGTGTTTGTGACATGGGAAATACTGAAGACTGGAAAG
AAATGTATAAAGAATGGCCCTTTTTCCAGTCTACCATAGATCTTATAGAG
ATGGTTTTAGGGAAGGCAGACACTCATATAGCCAAGCGCTATGATGAAGT
CCTTGTTTCAGAGAGTAGGCAAGAGCTTGGTGCTGAGCTAAGGAGGGAGC
TCTTAACAACTGAGAAGTTCGTACTTGTGGTTAGTGGGCATGAGAAGCTA
TCTGAGAATACCACAGTTTGAGGAGGCTGATTGAGAGCAGACTCCCATAT
CTCAATCCTATGAATATGTTGCANGTGGAGATACTGAAGAGATTGAGACA
GGATGATGATAACCATAACTCAGAGATGCATTGCTCATCACTATAAATGG
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