FC932456

Overview
NameFC932456
Unique NameFC932456
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length750
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC932456 vs. ExPASy Swiss-Prot
Match: CAPP_SHIFL (Phosphoenolpyruvate carboxylase OS=Shigella flexneri GN=ppc PE=3 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 6.320e-47
Identity = 91/200 (45.50%), Postives = 127/200 (63.50%), Query Frame = 1 
Query:    1 KFGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFNEATPQAELGYLNIGSRPTRRKSSTGIGHLRAIPWVFAWTQTRFVLPAWLGIGAGLKGVCDMGNTEDWKEMYKEWPFFQSTIDLIEMVLGKADTHIAKRYDEVLVSESRQELGAELRRELLTTEKFVLVVSGHEKL 600
            K+GLP+  V  L +YT A+L A + PP  P+E  WR +M+E+S ISC  YR  V EN +F+ YF  ATP+ ELG L +GSRP +R+ + G+  LRAIPW+FAWTQ R +LPAWLG G  L+ V + G   + + M ++WPFF + + ++EMV  KAD  +A+ YD+ LV ++   LG ELR       K VL ++    L
Sbjct:  620 KYGLPEITVSSLSLYTGAILEANLLPPPEPKES-WRRIMDELSVISCDLYRGYVRENKDFVPYFRSATPEQELGKLPLGSRPAKRRPTGGVESLRAIPWIFAWTQNRLMLPAWLGAGTALQKVVEDGKQSELEAMCRDWPFFSTRLGMLEMVFAKADLWLAEYYDQRLVDKALWPLGKELRNLQEEDIKVVLAIANDSHL 818
[Close]
BLAST of FC932456 vs. ExPASy Swiss-Prot
Match: CAPP_SHIF8 (Phosphoenolpyruvate carboxylase OS=Shigella flexneri serotype 5b (strain 8401) GN=ppc PE=3 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 6.320e-47
Identity = 91/200 (45.50%), Postives = 127/200 (63.50%), Query Frame = 1 
Query:    1 KFGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFNEATPQAELGYLNIGSRPTRRKSSTGIGHLRAIPWVFAWTQTRFVLPAWLGIGAGLKGVCDMGNTEDWKEMYKEWPFFQSTIDLIEMVLGKADTHIAKRYDEVLVSESRQELGAELRRELLTTEKFVLVVSGHEKL 600
            K+GLP+  V  L +YT A+L A + PP  P+E  WR +M+E+S ISC  YR  V EN +F+ YF  ATP+ ELG L +GSRP +R+ + G+  LRAIPW+FAWTQ R +LPAWLG G  L+ V + G   + + M ++WPFF + + ++EMV  KAD  +A+ YD+ LV ++   LG ELR       K VL ++    L
Sbjct:  620 KYGLPEITVSSLSLYTGAILEANLLPPPEPKES-WRRIMDELSVISCDLYRGYVRENKDFVPYFRSATPEQELGKLPLGSRPAKRRPTGGVESLRAIPWIFAWTQNRLMLPAWLGAGTALQKVVEDGKQSELEAMCRDWPFFSTRLGMLEMVFAKADLWLAEYYDQRLVDKALWPLGKELRNLQEEDIKVVLAIANDSHL 818
[Close]
BLAST of FC932456 vs. ExPASy Swiss-Prot
Match: CAPP_SHIB3 (Phosphoenolpyruvate carboxylase OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=ppc PE=3 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 6.320e-47
Identity = 91/200 (45.50%), Postives = 127/200 (63.50%), Query Frame = 1 
Query:    1 KFGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFNEATPQAELGYLNIGSRPTRRKSSTGIGHLRAIPWVFAWTQTRFVLPAWLGIGAGLKGVCDMGNTEDWKEMYKEWPFFQSTIDLIEMVLGKADTHIAKRYDEVLVSESRQELGAELRRELLTTEKFVLVVSGHEKL 600
            K+GLP+  V  L +YT A+L A + PP  P+E  WR +M+E+S ISC  YR  V EN +F+ YF  ATP+ ELG L +GSRP +R+ + G+  LRAIPW+FAWTQ R +LPAWLG G  L+ V + G   + + M ++WPFF + + ++EMV  KAD  +A+ YD+ LV ++   LG ELR       K VL ++    L
Sbjct:  620 KYGLPEITVSSLSLYTGAILEANLLPPPEPKES-WRRIMDELSVISCDVYRGYVRENKDFVPYFRSATPEQELGKLPLGSRPAKRRPTGGVESLRAIPWIFAWTQNRLMLPAWLGAGTALQKVVEDGKQSELEAMCRDWPFFSTRLGMLEMVFAKADLWLAEYYDQRLVDKALWPLGKELRNLQEEDIKVVLAIANDSHL 818
[Close]
BLAST of FC932456 vs. ExPASy Swiss-Prot
Match: CAPP_MEDSA (Phosphoenolpyruvate carboxylase OS=Medicago sativa GN=PEPC PE=2 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 6.320e-47
Identity = 102/222 (45.95%), Postives = 137/222 (61.71%), Query Frame = 1 
Query:    4 FGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFNEATPQAELGYLNIGSRPTRRKSSTGIGHLRAIPWVFAWTQTRFVLPAWLGIGAGLKGVC--DMGNTEDWKEMYKEWPFFQSTIDLIEMVLGKADTHIAKRYDEVLVSESRQELGAELRRELLTTEKFVLVVSGHEKLSENTTV*GG*LR-ADSHISIL 660
            FG      R L+ +T A L   MRPP  P+ E WR LM++++ I+ + YRS V++ P F+ YF  ATP+ E G +NIGSRP +R+ S GI  LRAIPW+FAWTQTRF LP WLG GA  + V   D+ N    +EMY +WPFF+ TIDL+EMV  K D  IA   D +LVS+     G +LR +   T+K +L V+ H+++ E        LR  DS+I+ L
Sbjct:  676 FGEEHLCFRTLQRFTAATLEHGMRPPSSPKPE-WRALMDQMAVIATEEYRSIVFKEPRFVEYFRLATPEMEYGRMNIGSRPAKRRPSGGIETLRAIPWIFAWTQTRFHLPVWLGFGAAFRQVVQKDVKNLHMLQEMYNQWPFFRVTIDLVEMVFAKGDPGIAALNDRLLVSKDLWPFGEQLRSKYEETKKLLLQVAAHKEVLEGDPYLKQRLRLRDSYITTL 896
[Close]
BLAST of FC932456 vs. ExPASy Swiss-Prot
Match: CAPP_FLAAU (Phosphoenolpyruvate carboxylase OS=Flaveria australasica PE=2 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 6.320e-47
Identity = 100/225 (44.44%), Postives = 136/225 (60.44%), Query Frame = 1 
Query:    4 FGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFNEATPQAELGYLNIGSRPTRRKSSTGIGHLRAIPWVFAWTQTRFVLPAWLGIGAGLKGVC--DMGNTEDWKEMYKEWPFFQSTIDLIEMVLGKADTHIAKRYDEVLVSESRQELGAELRRELLTTEKFVLVVSGHEKLSENTTV*GG*LR-ADSHISIL*IC 669
            FG      R L+ +  A L   M PP  PR E WR LM++++ ++ + YRS V++ P F+ YF  ATP+ E G +NIGSRP++RK S GI  LRAIPW+F+WTQTRF LP WLG GA  K     D  N +  +EMYK WPFF+ TIDL+EMV  K +  IA   D++LVSE  +  G  LR     T+ ++L ++GH+ L E        +R  D +I+ L +C
Sbjct:  675 FGEEHLCFRTLQRFCAATLEHGMNPPISPRPE-WRELMDQMAVVATEEYRSVVFKEPRFVEYFRLATPELEFGRMNIGSRPSKRKPSGGIESLRAIPWIFSWTQTRFHLPVWLGFGAAFKHAIQKDSKNLQMLQEMYKTWPFFRVTIDLVEMVFAKGNPGIAALNDKLLVSEDLRPFGESLRANYEETKNYLLKIAGHKDLLEGDPYLKQGIRLRDPYITTLNVC 898
[Close]
BLAST of FC932456 vs. ExPASy Swiss-Prot
Match: CAPP_ECOUT (Phosphoenolpyruvate carboxylase OS=Escherichia coli (strain UTI89 / UPEC) GN=ppc PE=3 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 6.320e-47
Identity = 91/200 (45.50%), Postives = 127/200 (63.50%), Query Frame = 1 
Query:    1 KFGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFNEATPQAELGYLNIGSRPTRRKSSTGIGHLRAIPWVFAWTQTRFVLPAWLGIGAGLKGVCDMGNTEDWKEMYKEWPFFQSTIDLIEMVLGKADTHIAKRYDEVLVSESRQELGAELRRELLTTEKFVLVVSGHEKL 600
            K+GLP+  V  L +YT A+L A + PP  P+E  WR +M+E+S ISC  YR  V EN +F+ YF  ATP+ ELG L +GSRP +R+ + G+  LRAIPW+FAWTQ R +LPAWLG G  L+ V + G   + + M ++WPFF + + ++EMV  KAD  +A+ YD+ LV ++   LG ELR       K VL ++    L
Sbjct:  620 KYGLPEITVSSLSLYTGAILEANLLPPPEPKES-WRRIMDELSVISCDVYRGYVRENKDFVPYFRSATPEQELGKLPLGSRPAKRRPTGGVESLRAIPWIFAWTQNRLMLPAWLGAGTALQKVVEDGKQNELEAMCRDWPFFSTRLGMLEMVFAKADLWLAEYYDQRLVDKALWPLGKELRNLQEEDIKVVLAIANDSHL 818
[Close]
BLAST of FC932456 vs. ExPASy Swiss-Prot
Match: CAPP_ECOSM (Phosphoenolpyruvate carboxylase OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=ppc PE=3 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 6.320e-47
Identity = 91/200 (45.50%), Postives = 127/200 (63.50%), Query Frame = 1 
Query:    1 KFGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFNEATPQAELGYLNIGSRPTRRKSSTGIGHLRAIPWVFAWTQTRFVLPAWLGIGAGLKGVCDMGNTEDWKEMYKEWPFFQSTIDLIEMVLGKADTHIAKRYDEVLVSESRQELGAELRRELLTTEKFVLVVSGHEKL 600
            K+GLP+  V  L +YT A+L A + PP  P+E  WR +M+E+S ISC  YR  V EN +F+ YF  ATP+ ELG L +GSRP +R+ + G+  LRAIPW+FAWTQ R +LPAWLG G  L+ V + G   + + M ++WPFF + + ++EMV  KAD  +A+ YD+ LV ++   LG ELR       K VL ++    L
Sbjct:  620 KYGLPEITVSSLSLYTGAILEANLLPPPEPKES-WRRIMDELSVISCDLYRGYVRENKDFVPYFRSATPEQELGKLPLGSRPAKRRPTGGVESLRAIPWIFAWTQNRLMLPAWLGAGTALQKVVEDGKQSELEAMCRDWPFFSTRLGMLEMVFAKADLWLAEYYDQRLVDKALWPLGKELRNLQEEDIKVVLAIANDSHL 818
[Close]
BLAST of FC932456 vs. ExPASy Swiss-Prot
Match: CAPP_ECOSE (Phosphoenolpyruvate carboxylase OS=Escherichia coli (strain SE11) GN=ppc PE=3 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 6.320e-47
Identity = 91/200 (45.50%), Postives = 127/200 (63.50%), Query Frame = 1 
Query:    1 KFGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFNEATPQAELGYLNIGSRPTRRKSSTGIGHLRAIPWVFAWTQTRFVLPAWLGIGAGLKGVCDMGNTEDWKEMYKEWPFFQSTIDLIEMVLGKADTHIAKRYDEVLVSESRQELGAELRRELLTTEKFVLVVSGHEKL 600
            K+GLP+  V  L +YT A+L A + PP  P+E  WR +M+E+S ISC  YR  V EN +F+ YF  ATP+ ELG L +GSRP +R+ + G+  LRAIPW+FAWTQ R +LPAWLG G  L+ V + G   + + M ++WPFF + + ++EMV  KAD  +A+ YD+ LV ++   LG ELR       K VL ++    L
Sbjct:  620 KYGLPEITVSSLSLYTGAILEANLLPPPEPKES-WRRIMDELSVISCDLYRGYVRENKDFVPYFRSATPEQELGKLPLGSRPAKRRPTGGVESLRAIPWIFAWTQNRLMLPAWLGAGTALQKVVEDGKQSELEAMCRDWPFFSTRLGMLEMVFAKADLWLAEYYDQRLVDKALWPLGKELRNLQEEDIKVVLAIANDSHL 818
[Close]
BLAST of FC932456 vs. ExPASy Swiss-Prot
Match: CAPP_ECOLU (Phosphoenolpyruvate carboxylase OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=ppc PE=3 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 6.320e-47
Identity = 91/200 (45.50%), Postives = 127/200 (63.50%), Query Frame = 1 
Query:    1 KFGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFNEATPQAELGYLNIGSRPTRRKSSTGIGHLRAIPWVFAWTQTRFVLPAWLGIGAGLKGVCDMGNTEDWKEMYKEWPFFQSTIDLIEMVLGKADTHIAKRYDEVLVSESRQELGAELRRELLTTEKFVLVVSGHEKL 600
            K+GLP+  V  L +YT A+L A + PP  P+E  WR +M+E+S ISC  YR  V EN +F+ YF  ATP+ ELG L +GSRP +R+ + G+  LRAIPW+FAWTQ R +LPAWLG G  L+ V + G   + + M ++WPFF + + ++EMV  KAD  +A+ YD+ LV ++   LG ELR       K VL ++    L
Sbjct:  620 KYGLPEITVSSLSLYTGAILEANLLPPPEPKES-WRRIMDELSVISCDLYRGYVRENKDFVPYFRSATPEQELGKLPLGSRPAKRRPTGGVESLRAIPWIFAWTQNRLMLPAWLGAGTALQKVVEDGKQSELEAMCRDWPFFSTRLGMLEMVFAKADLWLAEYYDQRLVDKALWPLGKELRNLQEEDIKVVLAIANDSHL 818
[Close]
BLAST of FC932456 vs. ExPASy Swiss-Prot
Match: CAPP_ECOLI (Phosphoenolpyruvate carboxylase OS=Escherichia coli (strain K12) GN=ppc PE=1 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 6.320e-47
Identity = 91/200 (45.50%), Postives = 127/200 (63.50%), Query Frame = 1 
Query:    1 KFGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFNEATPQAELGYLNIGSRPTRRKSSTGIGHLRAIPWVFAWTQTRFVLPAWLGIGAGLKGVCDMGNTEDWKEMYKEWPFFQSTIDLIEMVLGKADTHIAKRYDEVLVSESRQELGAELRRELLTTEKFVLVVSGHEKL 600
            K+GLP+  V  L +YT A+L A + PP  P+E  WR +M+E+S ISC  YR  V EN +F+ YF  ATP+ ELG L +GSRP +R+ + G+  LRAIPW+FAWTQ R +LPAWLG G  L+ V + G   + + M ++WPFF + + ++EMV  KAD  +A+ YD+ LV ++   LG ELR       K VL ++    L
Sbjct:  620 KYGLPEITVSSLSLYTGAILEANLLPPPEPKES-WRRIMDELSVISCDVYRGYVRENKDFVPYFRSATPEQELGKLPLGSRPAKRRPTGGVESLRAIPWIFAWTQNRLMLPAWLGAGTALQKVVEDGKQSELEAMCRDWPFFSTRLGMLEMVFAKADLWLAEYYDQRLVDKALWPLGKELRNLQEEDIKVVLAIANDSHL 818
The following BLAST results are available for this feature:
BLAST of FC932456 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 229
Match NameE-valueIdentityDescription
CAPP_SHIFL6.320e-4745.50Phosphoenolpyruvate carboxylase OS=Shigella flexne... [more]
CAPP_SHIF86.320e-4745.50Phosphoenolpyruvate carboxylase OS=Shigella flexne... [more]
CAPP_SHIB36.320e-4745.50Phosphoenolpyruvate carboxylase OS=Shigella boydii... [more]
CAPP_MEDSA6.320e-4745.95Phosphoenolpyruvate carboxylase OS=Medicago sativa... [more]
CAPP_FLAAU6.320e-4744.44Phosphoenolpyruvate carboxylase OS=Flaveria austra... [more]
CAPP_ECOUT6.320e-4745.50Phosphoenolpyruvate carboxylase OS=Escherichia col... [more]
CAPP_ECOSM6.320e-4745.50Phosphoenolpyruvate carboxylase OS=Escherichia col... [more]
CAPP_ECOSE6.320e-4745.50Phosphoenolpyruvate carboxylase OS=Escherichia col... [more]
CAPP_ECOLU6.320e-4745.50Phosphoenolpyruvate carboxylase OS=Escherichia col... [more]
CAPP_ECOLI6.320e-4745.50Phosphoenolpyruvate carboxylase OS=Escherichia col... [more]

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Properties
Property NameValue
Genbank descriptionC34208G08EF PostHarveN Citrus clementina cDNA clone C34208G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932456 ID=FC932456; Name=FC932456; organism=Citrus clementina; type=EST; length=750bp
AAGTTTGGGTTGCCACAGACAGCTGTTAGACAGCTAGAGATATACACAAC
TGCTGTGCTGCTTGCAACCATGCGACCTCCTCAACCTCCTCGAGAAGAAA
AATGGCGTAATCTCATGGAGGAGATCTCAAAAATTAGTTGCCAGAATTAC
CGGAGCACAGTCTATGAAAACCCAGAATTCCTTGCCTACTTCAACGAGGC
TACACCCCAGGCTGAACTAGGGTACCTTAATATAGGAAGCCGCCCCACAA
GAAGAAAGAGCTCAACAGGAATTGGCCATCTTCGAGCCATTCCATGGGTA
TTTGCATGGACCCAGACCAGGTTTGTCCTTCCAGCTTGGCTTGGAATCGG
AGCAGGGCTGAAGGGTGTTTGTGACATGGGAAATACTGAAGACTGGAAAG
AAATGTATAAAGAATGGCCCTTTTTCCAGTCTACCATAGATCTTATAGAG
ATGGTTTTAGGGAAGGCAGACACTCATATAGCCAAGCGCTATGATGAAGT
CCTTGTTTCAGAGAGTAGGCAAGAGCTTGGTGCTGAGCTAAGGAGGGAGC
TCTTAACAACTGAGAAGTTCGTACTTGTGGTTAGTGGGCATGAGAAGCTA
TCTGAGAATACCACAGTTTGAGGAGGCTGATTGAGAGCAGACTCCCATAT
CTCAATCCTATGAATATGTTGCANGTGGAGATACTGAAGAGATTGAGACA
GGATGATGATAACCATAACTCAGAGATGCATTGCTCATCACTATAAATGG
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