FC932456

Overview
NameFC932456
Unique NameFC932456
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length750
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC932456 vs. ExPASy Swiss-Prot
Match: CAPP_ECO57 (Phosphoenolpyruvate carboxylase OS=Escherichia coli O157:H7 GN=ppc PE=3 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 6.320e-47
Identity = 91/200 (45.50%), Postives = 127/200 (63.50%), Query Frame = 1 
Query:    1 KFGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFNEATPQAELGYLNIGSRPTRRKSSTGIGHLRAIPWVFAWTQTRFVLPAWLGIGAGLKGVCDMGNTEDWKEMYKEWPFFQSTIDLIEMVLGKADTHIAKRYDEVLVSESRQELGAELRRELLTTEKFVLVVSGHEKL 600
            K+GLP+  V  L +YT A+L A + PP  P+E  WR +M+E+S ISC  YR  V EN +F+ YF  ATP+ ELG L +GSRP +R+ + G+  LRAIPW+FAWTQ R +LPAWLG G  L+ V + G   + + M ++WPFF + + ++EMV  KAD  +A+ YD+ LV ++   LG ELR       K VL ++    L
Sbjct:  620 KYGLPEITVSSLSLYTGAILEANLLPPPEPKES-WRRIMDELSVISCDLYRGYVRENKDFVPYFRSATPEQELGKLPLGSRPAKRRPTGGVESLRAIPWIFAWTQNRLMLPAWLGAGTALQKVVEDGKQSELEAMCRDWPFFSTRLGMLEMVFAKADLWLAEYYDQRLVDKTLWPLGKELRNLQEEDIKVVLAIANDSHL 818
[Close]
BLAST of FC932456 vs. ExPASy Swiss-Prot
Match: CAPP_ECO55 (Phosphoenolpyruvate carboxylase OS=Escherichia coli (strain 55989 / EAEC) GN=ppc PE=3 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 6.320e-47
Identity = 91/200 (45.50%), Postives = 127/200 (63.50%), Query Frame = 1 
Query:    1 KFGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFNEATPQAELGYLNIGSRPTRRKSSTGIGHLRAIPWVFAWTQTRFVLPAWLGIGAGLKGVCDMGNTEDWKEMYKEWPFFQSTIDLIEMVLGKADTHIAKRYDEVLVSESRQELGAELRRELLTTEKFVLVVSGHEKL 600
            K+GLP+  V  L +YT A+L A + PP  P+E  WR +M+E+S ISC  YR  V EN +F+ YF  ATP+ ELG L +GSRP +R+ + G+  LRAIPW+FAWTQ R +LPAWLG G  L+ V + G   + + M ++WPFF + + ++EMV  KAD  +A+ YD+ LV ++   LG ELR       K VL ++    L
Sbjct:  620 KYGLPEITVSSLSLYTGAILEANLLPPPEPKES-WRRIMDELSVISCDLYRGYVRENKDFVPYFRSATPEQELGKLPLGSRPAKRRPTGGVESLRAIPWIFAWTQNRLMLPAWLGAGTALQKVVEDGKQSELEAMCRDWPFFSTRLGMLEMVFAKADLWLAEYYDQRLVDKALWPLGKELRNLQEEDIKVVLAIANDSHL 818
[Close]
BLAST of FC932456 vs. ExPASy Swiss-Prot
Match: CAPP_ECO45 (Phosphoenolpyruvate carboxylase OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=ppc PE=3 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 6.320e-47
Identity = 91/200 (45.50%), Postives = 127/200 (63.50%), Query Frame = 1 
Query:    1 KFGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFNEATPQAELGYLNIGSRPTRRKSSTGIGHLRAIPWVFAWTQTRFVLPAWLGIGAGLKGVCDMGNTEDWKEMYKEWPFFQSTIDLIEMVLGKADTHIAKRYDEVLVSESRQELGAELRRELLTTEKFVLVVSGHEKL 600
            K+GLP+  V  L +YT A+L A + PP  P+E  WR +M+E+S ISC  YR  V EN +F+ YF  ATP+ ELG L +GSRP +R+ + G+  LRAIPW+FAWTQ R +LPAWLG G  L+ V + G   + + M ++WPFF + + ++EMV  KAD  +A+ YD+ LV ++   LG ELR       K VL ++    L
Sbjct:  620 KYGLPEITVSSLSLYTGAILEANLLPPPEPKES-WRRIMDELSVISCDVYRGYVRENKDFVPYFRSATPEQELGKLPLGSRPAKRRPTGGVESLRAIPWIFAWTQNRLMLPAWLGAGTALQKVVEDGKQNELEAMCRDWPFFSTRLGMLEMVFAKADLWLAEYYDQRLVDKALWPLGKELRNLQEEDIKVVLAIANDSHL 818
[Close]
BLAST of FC932456 vs. ExPASy Swiss-Prot
Match: CAPP_ECO27 (Phosphoenolpyruvate carboxylase OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=ppc PE=3 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 6.320e-47
Identity = 91/200 (45.50%), Postives = 127/200 (63.50%), Query Frame = 1 
Query:    1 KFGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFNEATPQAELGYLNIGSRPTRRKSSTGIGHLRAIPWVFAWTQTRFVLPAWLGIGAGLKGVCDMGNTEDWKEMYKEWPFFQSTIDLIEMVLGKADTHIAKRYDEVLVSESRQELGAELRRELLTTEKFVLVVSGHEKL 600
            K+GLP+  V  L +YT A+L A + PP  P+E  WR +M+E+S ISC  YR  V EN +F+ YF  ATP+ ELG L +GSRP +R+ + G+  LRAIPW+FAWTQ R +LPAWLG G  L+ V + G   + + M ++WPFF + + ++EMV  KAD  +A+ YD+ LV ++   LG ELR       K VL ++    L
Sbjct:  620 KYGLPEITVSSLSLYTGAILEANLLPPPEPKES-WRRIMDELSVISCDVYRGYVRENKDFVPYFRSATPEQELGKLPLGSRPAKRRPTGGVESLRAIPWIFAWTQNRLMLPAWLGAGTALQKVVEDGKQSELEAMCRDWPFFSTRLGMLEMVFAKADLWLAEYYDQRLVDKALWPLGKELRNLQEEDIKVVLAIANDSHL 818
[Close]
BLAST of FC932456 vs. ExPASy Swiss-Prot
Match: CAPP_ECO24 (Phosphoenolpyruvate carboxylase OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=ppc PE=3 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 6.320e-47
Identity = 91/200 (45.50%), Postives = 127/200 (63.50%), Query Frame = 1 
Query:    1 KFGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFNEATPQAELGYLNIGSRPTRRKSSTGIGHLRAIPWVFAWTQTRFVLPAWLGIGAGLKGVCDMGNTEDWKEMYKEWPFFQSTIDLIEMVLGKADTHIAKRYDEVLVSESRQELGAELRRELLTTEKFVLVVSGHEKL 600
            K+GLP+  V  L +YT A+L A + PP  P+E  WR +M+E+S ISC  YR  V EN +F+ YF  ATP+ ELG L +GSRP +R+ + G+  LRAIPW+FAWTQ R +LPAWLG G  L+ V + G   + + M ++WPFF + + ++EMV  KAD  +A+ YD+ LV ++   LG ELR       K VL ++    L
Sbjct:  620 KYGLPEITVSSLSLYTGAILEANLLPPPEPKES-WRRIMDELSVISCDLYRGYVRENKDFVPYFRSATPEQELGKLPLGSRPAKRRPTGGVESLRAIPWIFAWTQNRLMLPAWLGAGTALQKVVEDGKQSELEAMCRDWPFFSTRLGMLEMVFAKADLWLAEYYDQRLVDKALWPLGKELRNLQEEDIKVVLAIANDSHL 818
[Close]
BLAST of FC932456 vs. ExPASy Swiss-Prot
Match: CAPP2_FLATR (Phosphoenolpyruvate carboxylase OS=Flaveria trinervia PE=2 SV=2)

HSP 1 Score: 187.578 bits (475), Expect = 6.320e-47
Identity = 100/225 (44.44%), Postives = 136/225 (60.44%), Query Frame = 1 
Query:    4 FGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFNEATPQAELGYLNIGSRPTRRKSSTGIGHLRAIPWVFAWTQTRFVLPAWLGIGAGLKGVC--DMGNTEDWKEMYKEWPFFQSTIDLIEMVLGKADTHIAKRYDEVLVSESRQELGAELRRELLTTEKFVLVVSGHEKLSENTTV*GG*LR-ADSHISIL*IC 669
            FG      R L+ +  A L   M PP  PR E WR LM++++ ++ + YRS V++ P F+ YF  ATP+ E G +NIGSRP++RK S GI  LRAIPW+F+WTQTRF LP WLG GA  K     D  N +  +EMYK WPFF+ TIDL+EMV  K +  IA   D++LVSE  +  G  LR     T+ ++L ++GH+ L E        +R  D +I+ L +C
Sbjct:  675 FGEEHLCFRTLQRFCAATLEHGMNPPISPRPE-WRELMDQMAVVATEEYRSVVFKEPRFVEYFRLATPELEFGRMNIGSRPSKRKPSGGIESLRAIPWIFSWTQTRFHLPVWLGFGAAFKHAIQKDSKNLQMLQEMYKTWPFFRVTIDLVEMVFAKGNPGIAALNDKLLVSEDLRPFGESLRANYEETKNYLLKIAGHKDLLEGDPYLKQGIRLRDPYITTLNVC 898
[Close]
BLAST of FC932456 vs. ExPASy Swiss-Prot
Match: CAPP1_FLATR (Phosphoenolpyruvate carboxylase OS=Flaveria trinervia GN=PPCA1 PE=2 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 6.320e-47
Identity = 100/225 (44.44%), Postives = 136/225 (60.44%), Query Frame = 1 
Query:    4 FGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFNEATPQAELGYLNIGSRPTRRKSSTGIGHLRAIPWVFAWTQTRFVLPAWLGIGAGLKGVC--DMGNTEDWKEMYKEWPFFQSTIDLIEMVLGKADTHIAKRYDEVLVSESRQELGAELRRELLTTEKFVLVVSGHEKLSENTTV*GG*LR-ADSHISIL*IC 669
            FG      R L+ +  A L   M PP  PR E WR LM++++ ++ + YRS V++ P F+ YF  ATP+ E G +NIGSRP++RK S GI  LRAIPW+F+WTQTRF LP WLG GA  K     D  N +  +EMYK WPFF+ TIDL+EMV  K +  IA   D++LVSE  +  G  LR     T+ ++L ++GH+ L E        +R  D +I+ L +C
Sbjct:  676 FGEEHLCFRTLQRFCAATLEHGMNPPISPRPE-WRELMDQMAVVATEEYRSVVFKEPRFVEYFRLATPELEFGRMNIGSRPSKRKPSGGIESLRAIPWIFSWTQTRFHLPVWLGFGAAFKHAIQKDSKNLQMLQEMYKTWPFFRVTIDLVEMVFAKGNPGIAALNDKLLVSEDLRPFGESLRANYEETKNYLLKIAGHKDLLEGDPYLKQGIRLRDPYITTLNVC 899
[Close]
BLAST of FC932456 vs. ExPASy Swiss-Prot
Match: CAPP_VIBPA (Phosphoenolpyruvate carboxylase OS=Vibrio parahaemolyticus GN=ppc PE=3 SV=2)

HSP 1 Score: 187.193 bits (474), Expect = 8.255e-47
Identity = 90/203 (44.33%), Postives = 129/203 (63.55%), Query Frame = 1 
Query:    1 KFGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFNEATPQAELGYLNIGSRPTRRKSSTGIGHLRAIPWVFAWTQTRFVLPAWLGIGAGLKGVCDMGNTEDWKEMYKEWPFFQSTIDLIEMVLGKADTHIAKRYDEVLVSESRQELGAELRRELLTTEKFVLVVSGHEKLSEN 609
            K GLP  AV    +Y +A+L A + PP  P++E WR+LME +S++SC+ YR  V   P+F+ YF +ATP+ ELG L +GSRP +R  + G+  LRAIPW+F+W+Q R VLPAWLG G  ++   D G+    +EM +EWPFF + + ++EMV  K +  I++ YD+ LV    Q LG  LR +L    K VL V  +E L ++
Sbjct:  618 KLGLPDVAVNSFNLYASAILEANLLPPPEPKQE-WRDLMEVLSEVSCEAYRGVVRGEPDFVPYFRQATPELELGKLPLGSRPAKRNPNGGVESLRAIPWIFSWSQNRLVLPAWLGAGEAIQYSVDKGHQALLEEMCREWPFFSTRLGMLEMVYTKCNMEISRYYDQRLVEPQLQPLGDRLREQLQRDIKSVLNVENNENLMQS 819
[Close]
BLAST of FC932456 vs. ExPASy Swiss-Prot
Match: CAPP_TOBAC (Phosphoenolpyruvate carboxylase OS=Nicotiana tabacum GN=PPC PE=2 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 8.255e-47
Identity = 105/222 (47.30%), Postives = 133/222 (59.91%), Query Frame = 1 
Query:    4 FGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFNEATPQAELGYLNIGSRPTRRKSSTGIGHLRAIPWVFAWTQTRFVLPAWLGIGAGLKGVC--DMGNTEDWKEMYKEWPFFQSTIDLIEMVLGKADTHIAKRYDEVLVSESRQELGAELRRELLTTEKFVLVVSGHEKLSENTTV*GG*LR-ADSHISIL 660
            FG      R L+ +T A L   M PP  P+ E WR LM+EI+ I+ + YRS V++ P F+ Y   ATP+ E G +NIGSRP++RK S GI  LRAIPW+FAWTQTRF LP WLG GA  K     D+ N   + EMY EWPFF+ TIDL+EMV  K +  IA  YD++LVSE     G  LR     T   +L ++GH+ L E        LR  DS+I+ L
Sbjct:  675 FGEEHLCFRTLQRFTAATLEHGMHPPVSPKPE-WRALMDEIAVIATEKYRSIVFKEPRFVEYSALATPELEYGRMNIGSRPSKRKPSGGIESLRAIPWIFAWTQTRFHLPVWLGFGAAFKYAIDKDIKNLRMFHEMYNEWPFFRVTIDLVEMVFAKGNPGIAALYDKLLVSEDLLPFGELLRSNYEETRSLLLQIAGHKDLLEGDPYLKQRLRLRDSYITTL 895
[Close]
BLAST of FC932456 vs. ExPASy Swiss-Prot
Match: CAPP_SHIDS (Phosphoenolpyruvate carboxylase OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=ppc PE=3 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 1.078e-46
Identity = 91/200 (45.50%), Postives = 127/200 (63.50%), Query Frame = 1 
Query:    1 KFGLPQTAVRQLEIYTTAVLLATMRPPQPPREEKWRNLMEEISKISCQNYRSTVYENPEFLAYFNEATPQAELGYLNIGSRPTRRKSSTGIGHLRAIPWVFAWTQTRFVLPAWLGIGAGLKGVCDMGNTEDWKEMYKEWPFFQSTIDLIEMVLGKADTHIAKRYDEVLVSESRQELGAELRRELLTTEKFVLVVSGHEKL 600
            K+GLP+  V  L +YT A+L A + PP P  +E WR +M+E+S ISC  YR  V EN +F+ YF  ATP+ ELG L +GSRP +R+ + G+  LRAIPW+FAWTQ R +LPAWLG G  L+ V + G   + + M ++WPFF + + ++EMV  KAD  +A+ YD+ LV ++   LG ELR       K VL ++    L
Sbjct:  620 KYGLPEITVSSLSLYTGAILEANLLPP-PELKESWRRIMDELSVISCDLYRGYVRENKDFVPYFRSATPEQELGKLPLGSRPAKRRPTGGVESLRAIPWIFAWTQNRLMLPAWLGAGTALQKVVEDGKQSELEAMCRDWPFFSTRLGMLEMVFAKADLWLAEYYDQRLVDKALWPLGKELRNLQEEDIKVVLAIANDSHL 818
The following BLAST results are available for this feature:
BLAST of FC932456 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 229
Match NameE-valueIdentityDescription
CAPP_ECO576.320e-4745.50Phosphoenolpyruvate carboxylase OS=Escherichia col... [more]
CAPP_ECO556.320e-4745.50Phosphoenolpyruvate carboxylase OS=Escherichia col... [more]
CAPP_ECO456.320e-4745.50Phosphoenolpyruvate carboxylase OS=Escherichia col... [more]
CAPP_ECO276.320e-4745.50Phosphoenolpyruvate carboxylase OS=Escherichia col... [more]
CAPP_ECO246.320e-4745.50Phosphoenolpyruvate carboxylase OS=Escherichia col... [more]
CAPP2_FLATR6.320e-4744.44Phosphoenolpyruvate carboxylase OS=Flaveria triner... [more]
CAPP1_FLATR6.320e-4744.44Phosphoenolpyruvate carboxylase OS=Flaveria triner... [more]
CAPP_VIBPA8.255e-4744.33Phosphoenolpyruvate carboxylase OS=Vibrio parahaem... [more]
CAPP_TOBAC8.255e-4747.30Phosphoenolpyruvate carboxylase OS=Nicotiana tabac... [more]
CAPP_SHIDS1.078e-4645.50Phosphoenolpyruvate carboxylase OS=Shigella dysent... [more]

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Properties
Property NameValue
Genbank descriptionC34208G08EF PostHarveN Citrus clementina cDNA clone C34208G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932456 ID=FC932456; Name=FC932456; organism=Citrus clementina; type=EST; length=750bp
AAGTTTGGGTTGCCACAGACAGCTGTTAGACAGCTAGAGATATACACAAC
TGCTGTGCTGCTTGCAACCATGCGACCTCCTCAACCTCCTCGAGAAGAAA
AATGGCGTAATCTCATGGAGGAGATCTCAAAAATTAGTTGCCAGAATTAC
CGGAGCACAGTCTATGAAAACCCAGAATTCCTTGCCTACTTCAACGAGGC
TACACCCCAGGCTGAACTAGGGTACCTTAATATAGGAAGCCGCCCCACAA
GAAGAAAGAGCTCAACAGGAATTGGCCATCTTCGAGCCATTCCATGGGTA
TTTGCATGGACCCAGACCAGGTTTGTCCTTCCAGCTTGGCTTGGAATCGG
AGCAGGGCTGAAGGGTGTTTGTGACATGGGAAATACTGAAGACTGGAAAG
AAATGTATAAAGAATGGCCCTTTTTCCAGTCTACCATAGATCTTATAGAG
ATGGTTTTAGGGAAGGCAGACACTCATATAGCCAAGCGCTATGATGAAGT
CCTTGTTTCAGAGAGTAGGCAAGAGCTTGGTGCTGAGCTAAGGAGGGAGC
TCTTAACAACTGAGAAGTTCGTACTTGTGGTTAGTGGGCATGAGAAGCTA
TCTGAGAATACCACAGTTTGAGGAGGCTGATTGAGAGCAGACTCCCATAT
CTCAATCCTATGAATATGTTGCANGTGGAGATACTGAAGAGATTGAGACA
GGATGATGATAACCATAACTCAGAGATGCATTGCTCATCACTATAAATGG
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