FC932460
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC932460 vs. ExPASy Swiss-Prot
Match: R13A1_ARATH (60S ribosomal protein L13a-1 OS=Arabidopsis thaliana GN=RPL13AA PE=2 SV=1) HSP 1 Score: 204.527 bits (519), Expect = 4.501e-52 Identity = 99/164 (60.37%), Postives = 122/164 (74.39%), Query Frame = 1 Query: 76 VVIDGAGHLLGRLASTVAKQLLNGQKIVVVRCEALNISGEFFRAKLKYHAYLRKMTRFNPTRGGPFHFRAPSRILYKAIRGMMPHKTARGAAALERLKVFEGIPPPYDKKKRVVVPQALRVLRLRPGRKYCTVGRLSHEVGWKYQDVVSRLEERRKVKSKAYYE 567 VV+D H+LGRLAS VAK LLNGQ IVVVRCE + +SG R K+KY +LRK P+ G P HFRAPS+I ++ +RGM+PHKT RGA AL RLKVFEG+P PYDK KR+VVP AL+VLRL+ G KYC +GRLS EVGW + D + LE +RK +++A YE Sbjct: 12 VVVDARHHMLGRLASVVAKDLLNGQNIVVVRCEEICLSGGLVRQKMKYMRFLRKRMNTKPSHG-PIHFRAPSKIFWRTVRGMIPHKTKRGANALARLKVFEGVPTPYDKIKRMVVPDALKVLRLQAGHKYCLLGRLSSEVGWNHYDTIKELENKRKERAQAVYE 174
BLAST of FC932460 vs. ExPASy Swiss-Prot
Match: R13A4_ARATH (60S ribosomal protein L13a-4 OS=Arabidopsis thaliana GN=RPL13AD PE=2 SV=1) HSP 1 Score: 202.601 bits (514), Expect = 1.710e-51 Identity = 95/164 (57.93%), Postives = 122/164 (74.39%), Query Frame = 1 Query: 76 VVIDGAGHLLGRLASTVAKQLLNGQKIVVVRCEALNISGEFFRAKLKYHAYLRKMTRFNPTRGGPFHFRAPSRILYKAIRGMMPHKTARGAAALERLKVFEGIPPPYDKKKRVVVPQALRVLRLRPGRKYCTVGRLSHEVGWKYQDVVSRLEERRKVKSKAYYE 567 VV+D H+LGRLAS AK+LLNGQK+V+VRCE + +SG R K+KY +LRK P+ G P HFRAPS+I ++ +RGM+PHKT RGAAAL RLKV+EG+P PYDK KR+V+P AL+VLRL+ G KYC +GRLS EVGW + D + LE +RK ++ YE Sbjct: 12 VVVDARHHMLGRLASITAKELLNGQKVVIVRCEEICLSGGLVRQKMKYMRFLRKRMNTKPSHG-PIHFRAPSKIFWRTVRGMIPHKTKRGAAALARLKVYEGVPTPYDKIKRMVIPDALKVLRLQAGHKYCLLGRLSSEVGWNHYDTIKELETKRKERAHVVYE 174
BLAST of FC932460 vs. ExPASy Swiss-Prot
Match: RL13A_DICDI (60S ribosomal protein L13a OS=Dictyostelium discoideum GN=rpl13a PE=3 SV=1) HSP 1 Score: 199.134 bits (505), Expect = 1.891e-50 Identity = 101/166 (60.84%), Postives = 123/166 (74.10%), Query Frame = 1 Query: 67 ESVVVIDGAGHLLGRLASTVAKQLLNGQKIVVVRCEALNISGEFFRAKLKYHAYLRKMTRFNPTRGGPFHFRAPSRILYKAIRGMMPHKTARGAAALERLKVFEGIPPPYDKKKRVVVPQALRVLRLRPGRKYCTVGRLSHEVGWKYQDVVSRLEERRKVKSKAYY 564 + +VIDG GHLLGRLAS VAK LL+GQKIVVVRCE LNISG R KLK+ +L N RG H R+PS+I ++A+RGM+PHKT RG AAL+ +KVFEG+P PYDK KRVVVP ALRV++L RKY + RLS EVGWKY+ VV++LE +RK +S YY Sbjct: 4 KKAIVIDGKGHLLGRLASVVAKSLLSGQKIVVVRCEELNISGPLSRNKLKWADFLNLTMNTNHARGHR-HGRSPSKIFWRAVRGMLPHKTPRGQAALDNMKVFEGVPAPYDKVKRVVVPSALRVVKLNTTRKYTVLSRLSQEVGWKYRAVVAKLEVQRKQRSSTYY 168
BLAST of FC932460 vs. ExPASy Swiss-Prot
Match: RL13A_CAEEL (60S ribosomal protein L13a OS=Caenorhabditis elegans GN=rpl-16 PE=2 SV=1) HSP 1 Score: 196.438 bits (498), Expect = 1.226e-49 Identity = 94/164 (57.32%), Postives = 122/164 (74.39%), Query Frame = 1 Query: 76 VVIDGAGHLLGRLASTVAKQLLNGQKIVVVRCEALNISGEFFRAKLKYHAYLRKMTRFNPTRGGPFHFRAPSRILYKAIRGMMPHKTARGAAALERLKVFEGIPPPYDKKKRVVVPQALRVLRLRPGRKYCTVGRLSHEVGWKYQDVVSRLEERRKVKSKAYYE 567 ++IDG HLLGRLAS VAK+LL G K+VV+R E + ISG F R+KLKY ++LRK NP RG FH+RAP +I ++ +RGM+PHKT RG AL+ L+ +EG+P Y K K + P A R RL+P RK+C VGRLSHEVGW++QDVV++LE +RKVK AY+E Sbjct: 8 IIIDGKNHLLGRLASIVAKKLLQGDKVVVLRAEEIVISGNFHRSKLKYMSFLRKRCNINPARGA-FHYRAPGKIFWRTVRGMLPHKTNRGNEALKNLRAYEGVPAKYQKTKSLHAPSASR-FRLQPRRKFCVVGRLSHEVGWQFQDVVAKLEAKRKVKGAAYFE 169
BLAST of FC932460 vs. ExPASy Swiss-Prot
Match: RL13A_LUPLU (60S ribosomal protein L13a OS=Lupinus luteus GN=RPL13A PE=2 SV=1) HSP 1 Score: 193.741 bits (491), Expect = 7.945e-49 Identity = 95/164 (57.93%), Postives = 122/164 (74.39%), Query Frame = 1 Query: 76 VVIDGAGHLLGRLASTVAKQLLNGQKIVVVRCEALNISGEFFRAKLKYHAYLRKMTRFNPTRGGPFHFRAPSRILYKAIRGMMPHKTARGAAALERLKVFEGIPPPYDKKKRVVVPQALRVLRLRPGRKYCTVGRLSHEVGWKYQDVVSRLEERRKVKSKAYYE 567 VV+D H+LGRLAS VAK+LLNGQK+V+VR E + ISG R K+KY +LRK P+ G P H APS+I ++ +RGM+PHKT RG AL RLKV+EGIPPP+DK+KR+VVP AL+VLRL+ G KYC +G+LS EVGW Y D + LE++RK +S+ YE Sbjct: 12 VVVDARHHMLGRLASIVAKELLNGQKVVIVRSEEICISGGLVRQKMKYLRFLRKRMNTKPSHG-PIHC-APSKIFWRTVRGMIPHKTKRGEHALARLKVYEGIPPPFDKQKRLVVPDALKVLRLQKGHKYCLLGQLSSEVGWNYYDTIKELEKKRKERSQVVYE 173
BLAST of FC932460 vs. ExPASy Swiss-Prot
Match: RL13A_PIG (60S ribosomal protein L13a (Fragment) OS=Sus scrofa GN=RPL13A PE=2 SV=2) HSP 1 Score: 190.274 bits (482), Expect = 8.784e-48 Identity = 92/137 (67.15%), Postives = 115/137 (83.94%), Query Frame = 1 Query: 73 VVVIDGAGHLLGRLASTVAKQLLNGQKIVVVRCEALNISGEFFRAKLKYHAYLRKMTRFNPTRGGPFHFRAPSRILYKAIRGMMPHKTARGAAALERLKVFEGIPPPYDKKKRVVVPQALRVLRLRPGRKYCTVGRL 483 V+V+DG GHLLGRLA+ VAKQ+L G+K+VVVRCE +NISG F+R KLKY A+LRK NP+RG P+HFRAPSRI ++ +RGM+PHKT RG AAL+RLKVF+GIPPPYDKKKR+VVP AL+V+RL+ K+ +GRL Sbjct: 2 VLVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRG-PYHFRAPSRIFWRTVRGMLPHKTKRGQAALDRLKVFDGIPPPYDKKKRMVVPAALKVVRLKLTGKFXYLGRL 137
BLAST of FC932460 vs. ExPASy Swiss-Prot
Match: R13AX_HUMAN (Putative 60S ribosomal protein L13a-like MGC87657 OS=Homo sapiens PE=5 SV=1) HSP 1 Score: 109.768 bits (273), Expect = 1.509e-23 Identity = 51/82 (62.20%), Postives = 66/82 (80.49%), Query Frame = 1 Query: 319 MMPHKTARGAAALERLKVFEGIPPPYDKKKRVVVPQALRVLRLRPGRKYCTVGRLSHEVGWKYQDVVSRLEERRKVKSKAYY 564 M+ HKT RG A+L+ LKVF+GIPPPYDKKKR+VVP AL+V+RL+P RK+ +GR + EV WKYQ V + LEE+RK K+K +Y Sbjct: 1 MLRHKTKRGHASLDCLKVFDGIPPPYDKKKRMVVPAALKVVRLKPTRKFALLGRQAQEVRWKYQAVTATLEEKRKEKAKIHY 82
BLAST of FC932460 vs. ExPASy Swiss-Prot
Match: RL13_METAC (50S ribosomal protein L13P OS=Methanosarcina acetivorans GN=rpl13p PE=3 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 5.023e-19 Identity = 57/146 (39.04%), Postives = 84/146 (57.53%), Query Frame = 1 Query: 73 VVVIDGAGHLLGRLASTVAKQLLNG-QKIVVVRCEALNISGEFFRAKLKYHAYLRKMTRFNPTRGGPFHFRAPSRILYKAIRGMMPHKTARGAAALERLKVFEGIPPPYDKKKRVVVPQALRVLRLRPGRKYCTVGRLSHEVGWKY 507 + VID G +LGRLAS+VAKQLL+G +K+ ++ E ISG +Y R+ T GP+ + P RIL + IRGM+P+K ARG A+ RLKV+ G+P + V +P A +RL +Y +G +S ++G K+ Sbjct: 4 MTVIDAKGLILGRLASSVAKQLLSGDEKVYIINAEQAIISGSRAATLREY----RETRERGATEFGPYFPKRPDRILKRTIRGMLPYKRARGRDAMSRLKVYVGVPYELKGAETVTIPDA--DMRLLSSSRYVELGEVSQKMGSKF 143
BLAST of FC932460 vs. ExPASy Swiss-Prot
Match: RL13_PYRKO (50S ribosomal protein L13P OS=Pyrococcus kodakaraensis GN=rpl13p PE=3 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 8.567e-19 Identity = 59/145 (40.69%), Postives = 85/145 (58.62%), Query Frame = 1 Query: 79 VIDGAGHLLGRLASTVAKQLLNGQKIVVVRCEALNISG--EFFRAKLKYHAYLRKMTRFNPTRGGPFHFRAPSRILYKAIRGMMPHKTARGAAALERLKVFEGIPPPYDKKKRVVVPQALRVLRLRPGRKYCTVGRLSHEVGWKY 507 +I+ G +LGRLAS VAK LL G+++V+V E I+G E AK K LR TR NP RG PF+ + I+ + +RGM+P KT RG A +RLKV+ G+P ++ K+ + +A P KY TVG ++ +G K+ Sbjct: 3 IINAEGLILGRLASKVAKMLLEGEEVVIVNAEKAIITGNREDIFAKYKQRTELR--TRTNPRRG-PFYPKRSDEIVRRTVRGMLPWKTDRGRKAFKRLKVYVGVPKEFEGKEFETISEAHMSRLATP--KYVTVGEVAKFLGGKF 142
BLAST of FC932460 vs. ExPASy Swiss-Prot
Match: RL13_PYRAB (50S ribosomal protein L13P OS=Pyrococcus abyssi GN=rpl13p PE=3 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 8.567e-19 Identity = 63/146 (43.15%), Postives = 88/146 (60.27%), Query Frame = 1 Query: 79 VIDGAGHLLGRLASTVAKQLLNGQKIVVVRCEALNISG--EFFRAKLKYHAYLRKMTRFNPTRGGPFHFRAPSRILYKAIRGMMPHKTARGAAALERLKVFEGIPPPYDKKKRVVVPQALRVLRL-RPGRKYCTVGRLSHEVGWKY 507 +I+ G +LGRLAS VAK LL G+++V+V E I+G E +K K LR +T NP RG PF+ + I+ + IRGM+P KT RG A +RLKV+ GIP + K+ + +A V RL RP KY TVG ++ +G K+ Sbjct: 3 IINAEGLILGRLASRVAKMLLEGEEVVIVNAEKAVITGNREVIFSKYKQRTGLRTLT--NPRRG-PFYPKRSDEIVRRTIRGMLPWKTDRGRKAFKRLKVYVGIPKEFKDKQLETIVEA-HVSRLSRP--KYVTVGEVAKFLGGKF 142 The following BLAST results are available for this feature:
BLAST of FC932460 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 55
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Sequences
The
following sequences are available for this feature:
EST sequence >FC932460 ID=FC932460; Name=FC932460; organism=Citrus clementina; type=EST; length=707bpback to top |