FC932460

Overview
NameFC932460
Unique NameFC932460
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length707
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15393 contig Ccv1_Contig15393:12..718. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932460 vs. ExPASy Swiss-Prot
Match: R13A1_ARATH (60S ribosomal protein L13a-1 OS=Arabidopsis thaliana GN=RPL13AA PE=2 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 4.501e-52
Identity = 99/164 (60.37%), Postives = 122/164 (74.39%), Query Frame = 1
Query:   76 VVIDGAGHLLGRLASTVAKQLLNGQKIVVVRCEALNISGEFFRAKLKYHAYLRKMTRFNPTRGGPFHFRAPSRILYKAIRGMMPHKTARGAAALERLKVFEGIPPPYDKKKRVVVPQALRVLRLRPGRKYCTVGRLSHEVGWKYQDVVSRLEERRKVKSKAYYE 567
            VV+D   H+LGRLAS VAK LLNGQ IVVVRCE + +SG   R K+KY  +LRK     P+ G P HFRAPS+I ++ +RGM+PHKT RGA AL RLKVFEG+P PYDK KR+VVP AL+VLRL+ G KYC +GRLS EVGW + D +  LE +RK +++A YE
Sbjct:   12 VVVDARHHMLGRLASVVAKDLLNGQNIVVVRCEEICLSGGLVRQKMKYMRFLRKRMNTKPSHG-PIHFRAPSKIFWRTVRGMIPHKTKRGANALARLKVFEGVPTPYDKIKRMVVPDALKVLRLQAGHKYCLLGRLSSEVGWNHYDTIKELENKRKERAQAVYE 174          
BLAST of FC932460 vs. ExPASy Swiss-Prot
Match: R13A4_ARATH (60S ribosomal protein L13a-4 OS=Arabidopsis thaliana GN=RPL13AD PE=2 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 1.710e-51
Identity = 95/164 (57.93%), Postives = 122/164 (74.39%), Query Frame = 1
Query:   76 VVIDGAGHLLGRLASTVAKQLLNGQKIVVVRCEALNISGEFFRAKLKYHAYLRKMTRFNPTRGGPFHFRAPSRILYKAIRGMMPHKTARGAAALERLKVFEGIPPPYDKKKRVVVPQALRVLRLRPGRKYCTVGRLSHEVGWKYQDVVSRLEERRKVKSKAYYE 567
            VV+D   H+LGRLAS  AK+LLNGQK+V+VRCE + +SG   R K+KY  +LRK     P+ G P HFRAPS+I ++ +RGM+PHKT RGAAAL RLKV+EG+P PYDK KR+V+P AL+VLRL+ G KYC +GRLS EVGW + D +  LE +RK ++   YE
Sbjct:   12 VVVDARHHMLGRLASITAKELLNGQKVVIVRCEEICLSGGLVRQKMKYMRFLRKRMNTKPSHG-PIHFRAPSKIFWRTVRGMIPHKTKRGAAALARLKVYEGVPTPYDKIKRMVIPDALKVLRLQAGHKYCLLGRLSSEVGWNHYDTIKELETKRKERAHVVYE 174          
BLAST of FC932460 vs. ExPASy Swiss-Prot
Match: RL13A_DICDI (60S ribosomal protein L13a OS=Dictyostelium discoideum GN=rpl13a PE=3 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 1.891e-50
Identity = 101/166 (60.84%), Postives = 123/166 (74.10%), Query Frame = 1
Query:   67 ESVVVIDGAGHLLGRLASTVAKQLLNGQKIVVVRCEALNISGEFFRAKLKYHAYLRKMTRFNPTRGGPFHFRAPSRILYKAIRGMMPHKTARGAAALERLKVFEGIPPPYDKKKRVVVPQALRVLRLRPGRKYCTVGRLSHEVGWKYQDVVSRLEERRKVKSKAYY 564
            +  +VIDG GHLLGRLAS VAK LL+GQKIVVVRCE LNISG   R KLK+  +L      N  RG   H R+PS+I ++A+RGM+PHKT RG AAL+ +KVFEG+P PYDK KRVVVP ALRV++L   RKY  + RLS EVGWKY+ VV++LE +RK +S  YY
Sbjct:    4 KKAIVIDGKGHLLGRLASVVAKSLLSGQKIVVVRCEELNISGPLSRNKLKWADFLNLTMNTNHARGHR-HGRSPSKIFWRAVRGMLPHKTPRGQAALDNMKVFEGVPAPYDKVKRVVVPSALRVVKLNTTRKYTVLSRLSQEVGWKYRAVVAKLEVQRKQRSSTYY 168          
BLAST of FC932460 vs. ExPASy Swiss-Prot
Match: RL13A_CAEEL (60S ribosomal protein L13a OS=Caenorhabditis elegans GN=rpl-16 PE=2 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 1.226e-49
Identity = 94/164 (57.32%), Postives = 122/164 (74.39%), Query Frame = 1
Query:   76 VVIDGAGHLLGRLASTVAKQLLNGQKIVVVRCEALNISGEFFRAKLKYHAYLRKMTRFNPTRGGPFHFRAPSRILYKAIRGMMPHKTARGAAALERLKVFEGIPPPYDKKKRVVVPQALRVLRLRPGRKYCTVGRLSHEVGWKYQDVVSRLEERRKVKSKAYYE 567
            ++IDG  HLLGRLAS VAK+LL G K+VV+R E + ISG F R+KLKY ++LRK    NP RG  FH+RAP +I ++ +RGM+PHKT RG  AL+ L+ +EG+P  Y K K +  P A R  RL+P RK+C VGRLSHEVGW++QDVV++LE +RKVK  AY+E
Sbjct:    8 IIIDGKNHLLGRLASIVAKKLLQGDKVVVLRAEEIVISGNFHRSKLKYMSFLRKRCNINPARGA-FHYRAPGKIFWRTVRGMLPHKTNRGNEALKNLRAYEGVPAKYQKTKSLHAPSASR-FRLQPRRKFCVVGRLSHEVGWQFQDVVAKLEAKRKVKGAAYFE 169          
BLAST of FC932460 vs. ExPASy Swiss-Prot
Match: RL13A_LUPLU (60S ribosomal protein L13a OS=Lupinus luteus GN=RPL13A PE=2 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 7.945e-49
Identity = 95/164 (57.93%), Postives = 122/164 (74.39%), Query Frame = 1
Query:   76 VVIDGAGHLLGRLASTVAKQLLNGQKIVVVRCEALNISGEFFRAKLKYHAYLRKMTRFNPTRGGPFHFRAPSRILYKAIRGMMPHKTARGAAALERLKVFEGIPPPYDKKKRVVVPQALRVLRLRPGRKYCTVGRLSHEVGWKYQDVVSRLEERRKVKSKAYYE 567
            VV+D   H+LGRLAS VAK+LLNGQK+V+VR E + ISG   R K+KY  +LRK     P+ G P H  APS+I ++ +RGM+PHKT RG  AL RLKV+EGIPPP+DK+KR+VVP AL+VLRL+ G KYC +G+LS EVGW Y D +  LE++RK +S+  YE
Sbjct:   12 VVVDARHHMLGRLASIVAKELLNGQKVVIVRSEEICISGGLVRQKMKYLRFLRKRMNTKPSHG-PIHC-APSKIFWRTVRGMIPHKTKRGEHALARLKVYEGIPPPFDKQKRLVVPDALKVLRLQKGHKYCLLGQLSSEVGWNYYDTIKELEKKRKERSQVVYE 173          
BLAST of FC932460 vs. ExPASy Swiss-Prot
Match: RL13A_PIG (60S ribosomal protein L13a (Fragment) OS=Sus scrofa GN=RPL13A PE=2 SV=2)

HSP 1 Score: 190.274 bits (482), Expect = 8.784e-48
Identity = 92/137 (67.15%), Postives = 115/137 (83.94%), Query Frame = 1
Query:   73 VVVIDGAGHLLGRLASTVAKQLLNGQKIVVVRCEALNISGEFFRAKLKYHAYLRKMTRFNPTRGGPFHFRAPSRILYKAIRGMMPHKTARGAAALERLKVFEGIPPPYDKKKRVVVPQALRVLRLRPGRKYCTVGRL 483
            V+V+DG GHLLGRLA+ VAKQ+L G+K+VVVRCE +NISG F+R KLKY A+LRK    NP+RG P+HFRAPSRI ++ +RGM+PHKT RG AAL+RLKVF+GIPPPYDKKKR+VVP AL+V+RL+   K+  +GRL
Sbjct:    2 VLVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRG-PYHFRAPSRIFWRTVRGMLPHKTKRGQAALDRLKVFDGIPPPYDKKKRMVVPAALKVVRLKLTGKFXYLGRL 137          
BLAST of FC932460 vs. ExPASy Swiss-Prot
Match: R13AX_HUMAN (Putative 60S ribosomal protein L13a-like MGC87657 OS=Homo sapiens PE=5 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.509e-23
Identity = 51/82 (62.20%), Postives = 66/82 (80.49%), Query Frame = 1
Query:  319 MMPHKTARGAAALERLKVFEGIPPPYDKKKRVVVPQALRVLRLRPGRKYCTVGRLSHEVGWKYQDVVSRLEERRKVKSKAYY 564
            M+ HKT RG A+L+ LKVF+GIPPPYDKKKR+VVP AL+V+RL+P RK+  +GR + EV WKYQ V + LEE+RK K+K +Y
Sbjct:    1 MLRHKTKRGHASLDCLKVFDGIPPPYDKKKRMVVPAALKVVRLKPTRKFALLGRQAQEVRWKYQAVTATLEEKRKEKAKIHY 82          
BLAST of FC932460 vs. ExPASy Swiss-Prot
Match: RL13_METAC (50S ribosomal protein L13P OS=Methanosarcina acetivorans GN=rpl13p PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.023e-19
Identity = 57/146 (39.04%), Postives = 84/146 (57.53%), Query Frame = 1
Query:   73 VVVIDGAGHLLGRLASTVAKQLLNG-QKIVVVRCEALNISGEFFRAKLKYHAYLRKMTRFNPTRGGPFHFRAPSRILYKAIRGMMPHKTARGAAALERLKVFEGIPPPYDKKKRVVVPQALRVLRLRPGRKYCTVGRLSHEVGWKY 507
            + VID  G +LGRLAS+VAKQLL+G +K+ ++  E   ISG       +Y    R+      T  GP+  + P RIL + IRGM+P+K ARG  A+ RLKV+ G+P      + V +P A   +RL    +Y  +G +S ++G K+
Sbjct:    4 MTVIDAKGLILGRLASSVAKQLLSGDEKVYIINAEQAIISGSRAATLREY----RETRERGATEFGPYFPKRPDRILKRTIRGMLPYKRARGRDAMSRLKVYVGVPYELKGAETVTIPDA--DMRLLSSSRYVELGEVSQKMGSKF 143          
BLAST of FC932460 vs. ExPASy Swiss-Prot
Match: RL13_PYRKO (50S ribosomal protein L13P OS=Pyrococcus kodakaraensis GN=rpl13p PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.567e-19
Identity = 59/145 (40.69%), Postives = 85/145 (58.62%), Query Frame = 1
Query:   79 VIDGAGHLLGRLASTVAKQLLNGQKIVVVRCEALNISG--EFFRAKLKYHAYLRKMTRFNPTRGGPFHFRAPSRILYKAIRGMMPHKTARGAAALERLKVFEGIPPPYDKKKRVVVPQALRVLRLRPGRKYCTVGRLSHEVGWKY 507
            +I+  G +LGRLAS VAK LL G+++V+V  E   I+G  E   AK K    LR  TR NP RG PF+ +    I+ + +RGM+P KT RG  A +RLKV+ G+P  ++ K+   + +A       P  KY TVG ++  +G K+
Sbjct:    3 IINAEGLILGRLASKVAKMLLEGEEVVIVNAEKAIITGNREDIFAKYKQRTELR--TRTNPRRG-PFYPKRSDEIVRRTVRGMLPWKTDRGRKAFKRLKVYVGVPKEFEGKEFETISEAHMSRLATP--KYVTVGEVAKFLGGKF 142          
BLAST of FC932460 vs. ExPASy Swiss-Prot
Match: RL13_PYRAB (50S ribosomal protein L13P OS=Pyrococcus abyssi GN=rpl13p PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.567e-19
Identity = 63/146 (43.15%), Postives = 88/146 (60.27%), Query Frame = 1
Query:   79 VIDGAGHLLGRLASTVAKQLLNGQKIVVVRCEALNISG--EFFRAKLKYHAYLRKMTRFNPTRGGPFHFRAPSRILYKAIRGMMPHKTARGAAALERLKVFEGIPPPYDKKKRVVVPQALRVLRL-RPGRKYCTVGRLSHEVGWKY 507
            +I+  G +LGRLAS VAK LL G+++V+V  E   I+G  E   +K K    LR +T  NP RG PF+ +    I+ + IRGM+P KT RG  A +RLKV+ GIP  +  K+   + +A  V RL RP  KY TVG ++  +G K+
Sbjct:    3 IINAEGLILGRLASRVAKMLLEGEEVVIVNAEKAVITGNREVIFSKYKQRTGLRTLT--NPRRG-PFYPKRSDEIVRRTIRGMLPWKTDRGRKAFKRLKVYVGIPKEFKDKQLETIVEA-HVSRLSRP--KYVTVGEVAKFLGGKF 142          
The following BLAST results are available for this feature:
BLAST of FC932460 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
R13A1_ARATH4.501e-5260.3760S ribosomal protein L13a-1 OS=Arabidopsis thalia... [more]
R13A4_ARATH1.710e-5157.9360S ribosomal protein L13a-4 OS=Arabidopsis thalia... [more]
RL13A_DICDI1.891e-5060.8460S ribosomal protein L13a OS=Dictyostelium discoi... [more]
RL13A_CAEEL1.226e-4957.3260S ribosomal protein L13a OS=Caenorhabditis elega... [more]
RL13A_LUPLU7.945e-4957.9360S ribosomal protein L13a OS=Lupinus luteus GN=RP... [more]
RL13A_PIG8.784e-4867.1560S ribosomal protein L13a (Fragment) OS=Sus scrof... [more]
R13AX_HUMAN1.509e-2362.20Putative 60S ribosomal protein L13a-like MGC87657 ... [more]
RL13_METAC5.023e-1939.0450S ribosomal protein L13P OS=Methanosarcina aceti... [more]
RL13_PYRKO8.567e-1940.6950S ribosomal protein L13P OS=Pyrococcus kodakarae... [more]
RL13_PYRAB8.567e-1943.1550S ribosomal protein L13P OS=Pyrococcus abyssi GN... [more]

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Properties
Property NameValue
Genbank descriptionC34208G12EF PostHarveN Citrus clementina cDNA clone C34208G12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932460 ID=FC932460; Name=FC932460; organism=Citrus clementina; type=EST; length=707bp
GACACGACAACAACCGCCGACAACATCCATCCCACGGGACATTAGATCAC
CAGGATGTCCTCCTTCGAATCAGTGGTCGTCATCGACGGCGCAGGACACC
TCCTCGGTCGTCTGGCCAGCACTGTCGCCAAGCAGCTGCTCAACGGTCAG
AAGATCGTCGTCGTGAGATGTGAGGCTCTCAACATCTCCGGCGAGTTCTT
CCGCGCGAAGCTCAAGTACCACGCCTACCTTCGCAAGATGACTCGTTTCA
ACCCCACCCGTGGTGGTCCCTTCCACTTCCGCGCTCCTTCCCGTATCCTC
TACAAGGCCATCCGCGGCATGATGCCCCACAAGACCGCCCGTGGTGCCGC
CGCTCTGGAGCGCCTCAAGGTCTTCGAGGGTATTCCCCCTCCCTACGACA
AGAAGAAGCGTGTCGTTGTTCCCCAGGCTCTCCGTGTCCTGCGTCTCCGC
CCCGGTCGCAAGTACTGCACCGTCGGCCGTCTCAGCCACGAGGTTGGCTG
GAAGTACCAGGATGTTGTTTCCAGACTCGAGGAGCGCAGAAAGGTCAAGA
GCAAGGCCTACTACGAGCGCAAGAAGGCCGCTCGCCGTGTCCTTGCCAAG
GCCGAGCAGGGAGCGAACGTGGACAGCCAGACCAAGACCCAGCTTGCTCA
GTTTGGCTACTAGATACCTTTAGCGTGGCTGGTTGTTGTGTCNAGCGATG
GTTCTGG
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