FC932460

Overview
NameFC932460
Unique NameFC932460
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length707
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932460 vs. ExPASy Swiss-Prot
Match: RL13_METBF (50S ribosomal protein L13P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rpl13p PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.567e-19
Identity = 58/146 (39.73%), Postives = 83/146 (56.85%), Query Frame = 1
Query:   73 VVVIDGAGHLLGRLASTVAKQLLNG-QKIVVVRCEALNISGEFFRAKLKYHAYLRKMTRFNPTRGGPFHFRAPSRILYKAIRGMMPHKTARGAAALERLKVFEGIPPPYDKKKRVVVPQALRVLRLRPGRKYCTVGRLSHEVGWKY 507
            + VID  G +LGRLASTVAKQLL+G ++I +V  E   ISG       +Y    R+      T  GP+  + P RIL + IRGM+P+K ARG  A+ RLKV+ G+P      + + +  A   +RL    KY  +G +S ++G K+
Sbjct:    1 MTVIDANGLILGRLASTVAKQLLSGDEEIYIVNAEKAVISGSRATTLKEY----RETRERGSTEFGPYFPKRPDRILKRTIRGMLPYKRARGRDAMSRLKVYVGVPTELKDTETITIADA--DMRLLSSSKYIELGEVSQKMGSKF 140          
BLAST of FC932460 vs. ExPASy Swiss-Prot
Match: RL13_PYRHO (50S ribosomal protein L13P OS=Pyrococcus horikoshii GN=rpl13p PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.119e-18
Identity = 63/146 (43.15%), Postives = 87/146 (59.59%), Query Frame = 1
Query:   79 VIDGAGHLLGRLASTVAKQLLNGQKIVVVRCEALNISG--EFFRAKLKYHAYLRKMTRFNPTRGGPFHFRAPSRILYKAIRGMMPHKTARGAAALERLKVFEGIPPPYDKKKRVVVPQALRVLRL-RPGRKYCTVGRLSHEVGWKY 507
            +I+  G +LGRLAS VAK LL G+++V+V  E   I+G  E   +K K    LR +T  NP RG PF+ +    I+ + IRGM+P KT RG  A  RLKV+ GIP  +  K+   + +A  V RL RP  KY TVG ++  +G K+
Sbjct:    3 IINADGLILGRLASRVAKMLLEGEEVVIVNAEKAVITGNREVIFSKYKQRTGLRTLT--NPRRG-PFYPKRSDEIVRRTIRGMLPWKTDRGRKAFRRLKVYVGIPKEFQDKQLETIVEA-HVSRLSRP--KYVTVGEVAKFLGGKF 142          
BLAST of FC932460 vs. ExPASy Swiss-Prot
Match: RL13_ARCFU (50S ribosomal protein L13P OS=Archaeoglobus fulgidus GN=rpl13p PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.119e-18
Identity = 53/146 (36.30%), Postives = 87/146 (59.59%), Query Frame = 1
Query:   67 ESVVVIDGAGHLLGRLASTVAKQLLNGQKIVVVRCEALNISGEFFRAKLKYHAYLRKMTRFNPTRGGPFHFRAPSRILYKAIRGMMPHKTARGAAALERLKVFEGIPPPYDKKKRVVVPQALRVLRLRPGRKYCTVGRLSHEVGWK 504
            +   VID +GH+LGRL+S +AK+LLNG++IVVV  E   I+G+ +   + +  Y  K  R +  + GP+  R P RI  + +RGM+P K++RG  A  RL+VF G+P     ++   +  AL + ++    KY T+  +S  +G++
Sbjct:   14 DDFTVIDASGHILGRLSSKIAKRLLNGERIVVVNAEKAVITGDKY---MVFERYKEKYDRGSKEK-GPYFPRHPERIFKRTVRGMLPWKSSRGRDAYRRLRVFMGVPEELQGREFEKIEDAL-LEKVSKTDKYVTLAEVSRYLGFR 154          
BLAST of FC932460 vs. ExPASy Swiss-Prot
Match: RL13_METBU (50S ribosomal protein L13P OS=Methanococcoides burtonii (strain DSM 6242) GN=rpl13p PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.461e-18
Identity = 58/145 (40.00%), Postives = 82/145 (56.55%), Query Frame = 1
Query:   73 VVVIDGAGHLLGRLASTVAKQLLNGQKIVVVRCEALNISGEFFRAKLKYHAYLRKMTRFNPTRGGPFHFRAPSRILYKAIRGMMPHKTARGAAALERLKVFEGIPPPYDKKKRVVVPQALRVLRLRPGRKYCTVGRLSHEVGWKY 507
            + VID  G ++GRLAS VAK LL+G+++ +V  E   ISG       +Y       TR      GP+  R P RIL + +RGM+P+K ARG  A+ RLKV+ GIP  Y   + V V +   + RL    KY T+G +S ++G K+
Sbjct:    1 MTVIDANGLIMGRLASNVAKMLLSGEEVSIVNAERAVISGSKVTTFEEYDVIRNMGTR----EFGPYFPRRPDRILKRTVRGMLPYKRARGKDAMGRLKVYVGIPYEYQDAEFVSV-EGAEMTRL-SSNKYVTIGDVSRQLGSKF 139          
BLAST of FC932460 vs. ExPASy Swiss-Prot
Match: RL13_SULSO (50S ribosomal protein L13P OS=Sulfolobus solfataricus GN=rpl13p PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.909e-18
Identity = 55/145 (37.93%), Postives = 85/145 (58.62%), Query Frame = 1
Query:   67 ESVVVIDGAGHLLGRLASTVAKQLLNGQKIVVVRCEALNISGEFFRAKLKYHAYLRKMTRFNPTRGGPFHFRAPSRILYKAIRGMMPHKTARGAAALERLKVFEGIPPPYDKKKRVVVPQALRVLRLRPGRKYCTVGRLSHEVGW 501
            E VV+I+  G +LGR+AS V + L  G+K+++V  E   ISGE  R    Y   L   T FNP R G    R+P  I+ + IRGM+P K+++G   L+ +K++ G+P  ++ ++ +  P +  V RL+   KY TV  +S E+GW
Sbjct:    7 EQVVIINAEGQILGRMASNVVRLLKEGKKVIIVNGEKAVISGEKNRVIESYKLLLTVKTLFNPYRNGIRRPRSPINIVKRTIRGMLP-KSSKGRRMLKNVKIYVGVPKEFEGRQFIKFPDS-DVSRLK--GKYVTVEVVSKELGW 147          
BLAST of FC932460 vs. ExPASy Swiss-Prot
Match: RL13_METMA (50S ribosomal protein L13P OS=Methanosarcina mazei GN=rpl13p PE=3 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 1.909e-18
Identity = 58/146 (39.73%), Postives = 83/146 (56.85%), Query Frame = 1
Query:   73 VVVIDGAGHLLGRLASTVAKQLLNG-QKIVVVRCEALNISGEFFRAKLKYHAYLRKMTRFNPTRGGPFHFRAPSRILYKAIRGMMPHKTARGAAALERLKVFEGIPPPYDKKKRVVVPQALRVLRLRPGRKYCTVGRLSHEVGWKY 507
            + VID  G +LGRLAS+VAKQLL+G +K+ ++  E   ISG       +Y    R+      T  GP+  + P RIL + IRGM+P+K ARG  A+ RLKV+ G+  PY+ K       A   +RL    KY  +G +S ++G K+
Sbjct:    1 MTVIDAKGLILGRLASSVAKQLLSGDEKVYIINAEKAIISGSRAATLREY----RETRDRGATEFGPYFPKRPDRILKRTIRGMLPYKRARGRDAMSRLKVYVGV--PYELKGAETTTIADADMRLLSSNKYVELGEVSQKMGSKF 140          
BLAST of FC932460 vs. ExPASy Swiss-Prot
Match: RLSX_METTH (Fused L13/S9 ribosomal protein OS=Methanobacterium thermoautotrophicum GN=rpl13p/rps9p PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.256e-18
Identity = 50/146 (34.25%), Postives = 86/146 (58.90%), Query Frame = 1
Query:   73 VVVIDGAGHLLGRLASTVAKQLLNGQKIVVVRCEALNISGEFFRAKLKYHAYLRKMTRFNPTRGGPFHFRAPSRILYKAIRGMMPHKTARGAAALERLKVFEGIPPPYDKKKRVVVPQALRVLRLRPGRKYCTVGRLSHEVGWKYQ 510
            +++I+G GH+LGRLAS V+K+LL G++++V+  E + I+G    A  KY   + + +  NP R GP + R P  I  + +RGM+P+K ++G  A + LK + GIP  +  ++ V +P A    +    +K   +G +S  +G + Q
Sbjct:    3 LMIINGEGHILGRLASVVSKKLLEGEEVIVLNAEKILITGSKEWAYGKYKQRIDRASISNPRRMGPKYPRRPDDIFRRTVRGMLPYKKSKGREAFKGLKAYVGIPREFKDEEMVEIPDA----KAGSIKKGMELGEISELLGARLQ 144          
BLAST of FC932460 vs. ExPASy Swiss-Prot
Match: RL13_PYRFU (50S ribosomal protein L13P OS=Pyrococcus furiosus GN=rpl13p PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.256e-18
Identity = 62/146 (42.47%), Postives = 87/146 (59.59%), Query Frame = 1
Query:   79 VIDGAGHLLGRLASTVAKQLLNGQKIVVVRCEALNISG--EFFRAKLKYHAYLRKMTRFNPTRGGPFHFRAPSRILYKAIRGMMPHKTARGAAALERLKVFEGIPPPYDKKKRVVVPQALRVLRL-RPGRKYCTVGRLSHEVGWKY 507
            +I+  G +LGRLAS VAK LL G+++V+V  E   I+G  +    K K    LR +T  NP RG PF+ +    I+ + IRGM+P KT RG  A +RLKV+ GIP  +  K+   + +A  V RL RP  KY TVG ++  +G K+
Sbjct:    3 IINAEGLILGRLASKVAKMLLEGEEVVIVNAEKAVITGNRDVIFKKYKQRTELRTLT--NPRRG-PFYPKRSDEIVRRTIRGMLPWKTDRGRKAFKRLKVYVGIPKEFQGKELETIIEA-HVSRLSRP--KYVTVGEVAKFLGGKF 142          
BLAST of FC932460 vs. ExPASy Swiss-Prot
Match: RL13_METHJ (50S ribosomal protein L13P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rpl13p PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.616e-17
Identity = 57/145 (39.31%), Postives = 80/145 (55.17%), Query Frame = 1
Query:   73 VVVIDGAGHLLGRLASTVAKQLLNGQKIVVVRCEALNISGEFFRAKLKYHAYLRKMTRFNPTRGGPFHFRAPSRILYKAIRGMMPHKTARGAAALERLKVFEGIPPPYDKKKRVVVPQALRVLRLRPGRKYCTVGRLSHEVGWKY 507
            VVVIDG G LLGRLAS VAK+ L G++I VV  E   ISG   R    Y    ++ +R     GGPF  R P  IL + IRGM+P+K  RG  A++R++++ G+P     +    +  A +     P   + T+G +S  +G KY
Sbjct:    2 VVVIDGDGLLLGRLASNVAKRALAGEEIAVVNAEKAVISGNRARVLGNYKQKRQRGSR----EGGPFFPRRPDHILKRTIRGMIPYKRERGIEAMKRIRIYVGVPDELSGQPFETIEDASKKRLGNP--SHVTLGAVSTFLGAKY 140          
BLAST of FC932460 vs. ExPASy Swiss-Prot
Match: RL13_PYRAE (50S ribosomal protein L13P OS=Pyrobaculum aerophilum GN=rpl13p PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.701e-17
Identity = 63/167 (37.72%), Postives = 95/167 (56.89%), Query Frame = 1
Query:   76 VVIDGAGHLLGRLASTVAKQLLN--GQKIVVVRCEALNISGEFFRAKLKYHAYLRKM----TRFNPTRGGPFHFRAPSRILYKAIRGMMPHKTARGAAALERLKVFEGIPPPYDKKKRVV---VPQALRVLRLRPGRKYCTVGRLSHEVGWKYQDVVSRLEERRKVK 549
            V++D  GH+ GRLA+ +AK LL     +IVVV  E L I+G+    K+    + RK+    T +NP + GP   R P R+  + +RGM+P K+  G +AL+RL+V+  IP    ++KR+V   VP+A   LRLRP  +Y T+     E  W+  D  +  + RR V+
Sbjct:   19 VIVDAEGHVAGRLATYIAKALLERPNLRIVVVNAEKLVITGD---EKMVIEWFKRKISEWRTHYNPEKAGPKVPRRPDRVFKRIVRGMLPKKSETGRSALKRLRVYMSIPIEIMQRKRLVLYEVPEA--KLRLRPLLQYTTL-----EEVWRSIDPEAWEKWRRAVE 175          
The following BLAST results are available for this feature:
BLAST of FC932460 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
RL13_METBF8.567e-1939.7350S ribosomal protein L13P OS=Methanosarcina barke... [more]
RL13_PYRHO1.119e-1843.1550S ribosomal protein L13P OS=Pyrococcus horikoshi... [more]
RL13_ARCFU1.119e-1836.3050S ribosomal protein L13P OS=Archaeoglobus fulgid... [more]
RL13_METBU1.461e-1840.0050S ribosomal protein L13P OS=Methanococcoides bur... [more]
RL13_SULSO1.909e-1837.9350S ribosomal protein L13P OS=Sulfolobus solfatari... [more]
RL13_METMA1.909e-1839.7350S ribosomal protein L13P OS=Methanosarcina mazei... [more]
RLSX_METTH3.256e-1834.25Fused L13/S9 ribosomal protein OS=Methanobacterium... [more]
RL13_PYRFU3.256e-1842.4750S ribosomal protein L13P OS=Pyrococcus furiosus ... [more]
RL13_METHJ1.616e-1739.3150S ribosomal protein L13P OS=Methanospirillum hun... [more]
RL13_PYRAE4.701e-1737.7250S ribosomal protein L13P OS=Pyrobaculum aerophil... [more]

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Properties
Property NameValue
Genbank descriptionC34208G12EF PostHarveN Citrus clementina cDNA clone C34208G12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932460 ID=FC932460; Name=FC932460; organism=Citrus clementina; type=EST; length=707bp
GACACGACAACAACCGCCGACAACATCCATCCCACGGGACATTAGATCAC
CAGGATGTCCTCCTTCGAATCAGTGGTCGTCATCGACGGCGCAGGACACC
TCCTCGGTCGTCTGGCCAGCACTGTCGCCAAGCAGCTGCTCAACGGTCAG
AAGATCGTCGTCGTGAGATGTGAGGCTCTCAACATCTCCGGCGAGTTCTT
CCGCGCGAAGCTCAAGTACCACGCCTACCTTCGCAAGATGACTCGTTTCA
ACCCCACCCGTGGTGGTCCCTTCCACTTCCGCGCTCCTTCCCGTATCCTC
TACAAGGCCATCCGCGGCATGATGCCCCACAAGACCGCCCGTGGTGCCGC
CGCTCTGGAGCGCCTCAAGGTCTTCGAGGGTATTCCCCCTCCCTACGACA
AGAAGAAGCGTGTCGTTGTTCCCCAGGCTCTCCGTGTCCTGCGTCTCCGC
CCCGGTCGCAAGTACTGCACCGTCGGCCGTCTCAGCCACGAGGTTGGCTG
GAAGTACCAGGATGTTGTTTCCAGACTCGAGGAGCGCAGAAAGGTCAAGA
GCAAGGCCTACTACGAGCGCAAGAAGGCCGCTCGCCGTGTCCTTGCCAAG
GCCGAGCAGGGAGCGAACGTGGACAGCCAGACCAAGACCCAGCTTGCTCA
GTTTGGCTACTAGATACCTTTAGCGTGGCTGGTTGTTGTGTCNAGCGATG
GTTCTGG
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