FC932460
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC932460 vs. ExPASy Swiss-Prot
Match: RL13_METBF (50S ribosomal protein L13P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rpl13p PE=3 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 8.567e-19 Identity = 58/146 (39.73%), Postives = 83/146 (56.85%), Query Frame = 1 Query: 73 VVVIDGAGHLLGRLASTVAKQLLNG-QKIVVVRCEALNISGEFFRAKLKYHAYLRKMTRFNPTRGGPFHFRAPSRILYKAIRGMMPHKTARGAAALERLKVFEGIPPPYDKKKRVVVPQALRVLRLRPGRKYCTVGRLSHEVGWKY 507 + VID G +LGRLASTVAKQLL+G ++I +V E ISG +Y R+ T GP+ + P RIL + IRGM+P+K ARG A+ RLKV+ G+P + + + A +RL KY +G +S ++G K+ Sbjct: 1 MTVIDANGLILGRLASTVAKQLLSGDEEIYIVNAEKAVISGSRATTLKEY----RETRERGSTEFGPYFPKRPDRILKRTIRGMLPYKRARGRDAMSRLKVYVGVPTELKDTETITIADA--DMRLLSSSKYIELGEVSQKMGSKF 140
BLAST of FC932460 vs. ExPASy Swiss-Prot
Match: RL13_PYRHO (50S ribosomal protein L13P OS=Pyrococcus horikoshii GN=rpl13p PE=1 SV=1) HSP 1 Score: 93.5893 bits (231), Expect = 1.119e-18 Identity = 63/146 (43.15%), Postives = 87/146 (59.59%), Query Frame = 1 Query: 79 VIDGAGHLLGRLASTVAKQLLNGQKIVVVRCEALNISG--EFFRAKLKYHAYLRKMTRFNPTRGGPFHFRAPSRILYKAIRGMMPHKTARGAAALERLKVFEGIPPPYDKKKRVVVPQALRVLRL-RPGRKYCTVGRLSHEVGWKY 507 +I+ G +LGRLAS VAK LL G+++V+V E I+G E +K K LR +T NP RG PF+ + I+ + IRGM+P KT RG A RLKV+ GIP + K+ + +A V RL RP KY TVG ++ +G K+ Sbjct: 3 IINADGLILGRLASRVAKMLLEGEEVVIVNAEKAVITGNREVIFSKYKQRTGLRTLT--NPRRG-PFYPKRSDEIVRRTIRGMLPWKTDRGRKAFRRLKVYVGIPKEFQDKQLETIVEA-HVSRLSRP--KYVTVGEVAKFLGGKF 142
BLAST of FC932460 vs. ExPASy Swiss-Prot
Match: RL13_ARCFU (50S ribosomal protein L13P OS=Archaeoglobus fulgidus GN=rpl13p PE=3 SV=1) HSP 1 Score: 93.5893 bits (231), Expect = 1.119e-18 Identity = 53/146 (36.30%), Postives = 87/146 (59.59%), Query Frame = 1 Query: 67 ESVVVIDGAGHLLGRLASTVAKQLLNGQKIVVVRCEALNISGEFFRAKLKYHAYLRKMTRFNPTRGGPFHFRAPSRILYKAIRGMMPHKTARGAAALERLKVFEGIPPPYDKKKRVVVPQALRVLRLRPGRKYCTVGRLSHEVGWK 504 + VID +GH+LGRL+S +AK+LLNG++IVVV E I+G+ + + + Y K R + + GP+ R P RI + +RGM+P K++RG A RL+VF G+P ++ + AL + ++ KY T+ +S +G++ Sbjct: 14 DDFTVIDASGHILGRLSSKIAKRLLNGERIVVVNAEKAVITGDKY---MVFERYKEKYDRGSKEK-GPYFPRHPERIFKRTVRGMLPWKSSRGRDAYRRLRVFMGVPEELQGREFEKIEDAL-LEKVSKTDKYVTLAEVSRYLGFR 154
BLAST of FC932460 vs. ExPASy Swiss-Prot
Match: RL13_METBU (50S ribosomal protein L13P OS=Methanococcoides burtonii (strain DSM 6242) GN=rpl13p PE=3 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 1.461e-18 Identity = 58/145 (40.00%), Postives = 82/145 (56.55%), Query Frame = 1 Query: 73 VVVIDGAGHLLGRLASTVAKQLLNGQKIVVVRCEALNISGEFFRAKLKYHAYLRKMTRFNPTRGGPFHFRAPSRILYKAIRGMMPHKTARGAAALERLKVFEGIPPPYDKKKRVVVPQALRVLRLRPGRKYCTVGRLSHEVGWKY 507 + VID G ++GRLAS VAK LL+G+++ +V E ISG +Y TR GP+ R P RIL + +RGM+P+K ARG A+ RLKV+ GIP Y + V V + + RL KY T+G +S ++G K+ Sbjct: 1 MTVIDANGLIMGRLASNVAKMLLSGEEVSIVNAERAVISGSKVTTFEEYDVIRNMGTR----EFGPYFPRRPDRILKRTVRGMLPYKRARGKDAMGRLKVYVGIPYEYQDAEFVSV-EGAEMTRL-SSNKYVTIGDVSRQLGSKF 139
BLAST of FC932460 vs. ExPASy Swiss-Prot
Match: RL13_SULSO (50S ribosomal protein L13P OS=Sulfolobus solfataricus GN=rpl13p PE=3 SV=1) HSP 1 Score: 92.8189 bits (229), Expect = 1.909e-18 Identity = 55/145 (37.93%), Postives = 85/145 (58.62%), Query Frame = 1 Query: 67 ESVVVIDGAGHLLGRLASTVAKQLLNGQKIVVVRCEALNISGEFFRAKLKYHAYLRKMTRFNPTRGGPFHFRAPSRILYKAIRGMMPHKTARGAAALERLKVFEGIPPPYDKKKRVVVPQALRVLRLRPGRKYCTVGRLSHEVGW 501 E VV+I+ G +LGR+AS V + L G+K+++V E ISGE R Y L T FNP R G R+P I+ + IRGM+P K+++G L+ +K++ G+P ++ ++ + P + V RL+ KY TV +S E+GW Sbjct: 7 EQVVIINAEGQILGRMASNVVRLLKEGKKVIIVNGEKAVISGEKNRVIESYKLLLTVKTLFNPYRNGIRRPRSPINIVKRTIRGMLP-KSSKGRRMLKNVKIYVGVPKEFEGRQFIKFPDS-DVSRLK--GKYVTVEVVSKELGW 147
BLAST of FC932460 vs. ExPASy Swiss-Prot
Match: RL13_METMA (50S ribosomal protein L13P OS=Methanosarcina mazei GN=rpl13p PE=3 SV=2) HSP 1 Score: 92.8189 bits (229), Expect = 1.909e-18 Identity = 58/146 (39.73%), Postives = 83/146 (56.85%), Query Frame = 1 Query: 73 VVVIDGAGHLLGRLASTVAKQLLNG-QKIVVVRCEALNISGEFFRAKLKYHAYLRKMTRFNPTRGGPFHFRAPSRILYKAIRGMMPHKTARGAAALERLKVFEGIPPPYDKKKRVVVPQALRVLRLRPGRKYCTVGRLSHEVGWKY 507 + VID G +LGRLAS+VAKQLL+G +K+ ++ E ISG +Y R+ T GP+ + P RIL + IRGM+P+K ARG A+ RLKV+ G+ PY+ K A +RL KY +G +S ++G K+ Sbjct: 1 MTVIDAKGLILGRLASSVAKQLLSGDEKVYIINAEKAIISGSRAATLREY----RETRDRGATEFGPYFPKRPDRILKRTIRGMLPYKRARGRDAMSRLKVYVGV--PYELKGAETTTIADADMRLLSSNKYVELGEVSQKMGSKF 140
BLAST of FC932460 vs. ExPASy Swiss-Prot
Match: RLSX_METTH (Fused L13/S9 ribosomal protein OS=Methanobacterium thermoautotrophicum GN=rpl13p/rps9p PE=3 SV=1) HSP 1 Score: 92.0485 bits (227), Expect = 3.256e-18 Identity = 50/146 (34.25%), Postives = 86/146 (58.90%), Query Frame = 1 Query: 73 VVVIDGAGHLLGRLASTVAKQLLNGQKIVVVRCEALNISGEFFRAKLKYHAYLRKMTRFNPTRGGPFHFRAPSRILYKAIRGMMPHKTARGAAALERLKVFEGIPPPYDKKKRVVVPQALRVLRLRPGRKYCTVGRLSHEVGWKYQ 510 +++I+G GH+LGRLAS V+K+LL G++++V+ E + I+G A KY + + + NP R GP + R P I + +RGM+P+K ++G A + LK + GIP + ++ V +P A + +K +G +S +G + Q Sbjct: 3 LMIINGEGHILGRLASVVSKKLLEGEEVIVLNAEKILITGSKEWAYGKYKQRIDRASISNPRRMGPKYPRRPDDIFRRTVRGMLPYKKSKGREAFKGLKAYVGIPREFKDEEMVEIPDA----KAGSIKKGMELGEISELLGARLQ 144
BLAST of FC932460 vs. ExPASy Swiss-Prot
Match: RL13_PYRFU (50S ribosomal protein L13P OS=Pyrococcus furiosus GN=rpl13p PE=3 SV=1) HSP 1 Score: 92.0485 bits (227), Expect = 3.256e-18 Identity = 62/146 (42.47%), Postives = 87/146 (59.59%), Query Frame = 1 Query: 79 VIDGAGHLLGRLASTVAKQLLNGQKIVVVRCEALNISG--EFFRAKLKYHAYLRKMTRFNPTRGGPFHFRAPSRILYKAIRGMMPHKTARGAAALERLKVFEGIPPPYDKKKRVVVPQALRVLRL-RPGRKYCTVGRLSHEVGWKY 507 +I+ G +LGRLAS VAK LL G+++V+V E I+G + K K LR +T NP RG PF+ + I+ + IRGM+P KT RG A +RLKV+ GIP + K+ + +A V RL RP KY TVG ++ +G K+ Sbjct: 3 IINAEGLILGRLASKVAKMLLEGEEVVIVNAEKAVITGNRDVIFKKYKQRTELRTLT--NPRRG-PFYPKRSDEIVRRTIRGMLPWKTDRGRKAFKRLKVYVGIPKEFQGKELETIIEA-HVSRLSRP--KYVTVGEVAKFLGGKF 142
BLAST of FC932460 vs. ExPASy Swiss-Prot
Match: RL13_METHJ (50S ribosomal protein L13P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rpl13p PE=3 SV=1) HSP 1 Score: 89.7373 bits (221), Expect = 1.616e-17 Identity = 57/145 (39.31%), Postives = 80/145 (55.17%), Query Frame = 1 Query: 73 VVVIDGAGHLLGRLASTVAKQLLNGQKIVVVRCEALNISGEFFRAKLKYHAYLRKMTRFNPTRGGPFHFRAPSRILYKAIRGMMPHKTARGAAALERLKVFEGIPPPYDKKKRVVVPQALRVLRLRPGRKYCTVGRLSHEVGWKY 507 VVVIDG G LLGRLAS VAK+ L G++I VV E ISG R Y ++ +R GGPF R P IL + IRGM+P+K RG A++R++++ G+P + + A + P + T+G +S +G KY Sbjct: 2 VVVIDGDGLLLGRLASNVAKRALAGEEIAVVNAEKAVISGNRARVLGNYKQKRQRGSR----EGGPFFPRRPDHILKRTIRGMIPYKRERGIEAMKRIRIYVGVPDELSGQPFETIEDASKKRLGNP--SHVTLGAVSTFLGAKY 140
BLAST of FC932460 vs. ExPASy Swiss-Prot
Match: RL13_PYRAE (50S ribosomal protein L13P OS=Pyrobaculum aerophilum GN=rpl13p PE=3 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 4.701e-17 Identity = 63/167 (37.72%), Postives = 95/167 (56.89%), Query Frame = 1 Query: 76 VVIDGAGHLLGRLASTVAKQLLN--GQKIVVVRCEALNISGEFFRAKLKYHAYLRKM----TRFNPTRGGPFHFRAPSRILYKAIRGMMPHKTARGAAALERLKVFEGIPPPYDKKKRVV---VPQALRVLRLRPGRKYCTVGRLSHEVGWKYQDVVSRLEERRKVK 549 V++D GH+ GRLA+ +AK LL +IVVV E L I+G+ K+ + RK+ T +NP + GP R P R+ + +RGM+P K+ G +AL+RL+V+ IP ++KR+V VP+A LRLRP +Y T+ E W+ D + + RR V+ Sbjct: 19 VIVDAEGHVAGRLATYIAKALLERPNLRIVVVNAEKLVITGD---EKMVIEWFKRKISEWRTHYNPEKAGPKVPRRPDRVFKRIVRGMLPKKSETGRSALKRLRVYMSIPIEIMQRKRLVLYEVPEA--KLRLRPLLQYTTL-----EEVWRSIDPEAWEKWRRAVE 175 The following BLAST results are available for this feature:
BLAST of FC932460 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 55
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Sequences
The
following sequences are available for this feature:
EST sequence >FC932460 ID=FC932460; Name=FC932460; organism=Citrus clementina; type=EST; length=707bpback to top |