FC932460
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC932460 vs. ExPASy Swiss-Prot
Match: RL13_THENV (50S ribosomal protein L13P OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=rpl13p PE=3 SV=1) HSP 1 Score: 87.8113 bits (216), Expect = 6.140e-17 Identity = 58/165 (35.15%), Postives = 90/165 (54.55%), Query Frame = 1 Query: 76 VVIDGAGHLLGRLASTVAKQLLN--GQKIVVVRCEALNISGEFFRAKLKYHAYLRKM----TRFNPTRGGPFHFRAPSRILYKAIRGMMPHKTARGAAALERLKVFEGIPPPYDKKKRVVVPQALRV-LRLRPGRKYCTVGRLSHEV---GWKYQDVVSRLEERR 540 VVI+ GH+ GRLA+ +AK LL G +IVVV E L ++G+ K+ + RK+ T +NP + GP R P R+ + +RGM+P + G AL+RL+V+ +P +KR+VV + LR+RP KY T+ + +V W+ L ++R Sbjct: 17 VVINAEGHIAGRLATYIAKALLEKPGLRIVVVNAEKLVVTGD---EKMVVEWFKRKISEWGTHYNPEKAGPKIPRRPDRVFKRMVRGMLPKRAESGRRALKRLRVYVSVPMELLSRKRLVVYEVPPAKLRMRPLAKYVTLEEVWRQVDPAAWEQWKKAQELWQKR 178
BLAST of FC932460 vs. ExPASy Swiss-Prot
Match: RL13_PYRIL (50S ribosomal protein L13P OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rpl13p PE=3 SV=1) HSP 1 Score: 87.0409 bits (214), Expect = 1.047e-16 Identity = 56/160 (35.00%), Postives = 89/160 (55.62%), Query Frame = 1 Query: 76 VVIDGAGHLLGRLASTVAKQLLN--GQKIVVVRCEALNISGEFFRAKLKYHAYLRKM----TRFNPTRGGPFHFRAPSRILYKAIRGMMPHKTARGAAALERLKVFEGIP-PPYDKKKRVVVPQALRVLRLRPGRKYCTVGRLSHEVGWKYQDVVSRLEE 534 ++ID GH+ GRLA+ VAK LL +IVVV E L I+G+ K+ + RK+ T +NP + GP R P R+ + +RGM+P K RG +AL+RL+V+ IP ++KK V+ L L+++P K+ T+ + + + + R +E Sbjct: 17 IIIDADGHIAGRLATYVAKALLERPSLRIVVVNAEKLVITGD---RKMVIEWFKRKISEWRTHYNPEKAGPKIPRRPDRVFKRIVRGMLPKKNMRGRSALKRLRVYMSIPLEMLNRKKLVLYEVPLAKLKVKPLAKFVTLEEVWRNIDFAAWEQWKRAQE 173
BLAST of FC932460 vs. ExPASy Swiss-Prot
Match: RL13_METST (50S ribosomal protein L13P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rpl13p PE=3 SV=1) HSP 1 Score: 87.0409 bits (214), Expect = 1.047e-16 Identity = 49/119 (41.18%), Postives = 72/119 (60.50%), Query Frame = 1 Query: 73 VVVIDGAGHLLGRLASTVAKQLLNGQKIVVVRCEALNISGEFFRAKLKYHAYLRKMTRFNPTRGGPFHFRAPSRILYKAIRGMMPHKTARGAAALERLKVFEGIPPPYDKKKRVVVPQA 429 V +IDG G +LGRLASTV+K+LL+G++I ++ E + ISG KY + + + NP GP + R P I + +RGM+P++ A G AA + LKV GIP + ++ V V QA Sbjct: 2 VTIIDGEGLVLGRLASTVSKRLLDGEEITIINAEKIIISGNKDFIYAKYKQRVDRASISNPRDLGPKYPRRPDDIFRRTVRGMIPYRKAHGRAAYKNLKVNVGIPKELEGQEVVEVEQA 120
BLAST of FC932460 vs. ExPASy Swiss-Prot
Match: RL13_AERPE (50S ribosomal protein L13P OS=Aeropyrum pernix GN=rpl13p PE=3 SV=1) HSP 1 Score: 82.8037 bits (203), Expect = 1.975e-15 Identity = 49/143 (34.27%), Postives = 76/143 (53.15%), Query Frame = 1 Query: 76 VVIDGAGHLLGRLASTVAKQLLNGQKIVVVRCEALNISGEFFRAKLKYHAYLRKMTRFNPTRGGPFHFRAPSRILYKAIRGMMPHKTARGAAALERLKVFEGIPPPYDKKKRVVVPQALRVLRLRPGRKYCTVGRLSHEVGWK 504 +V+DG+G ++GRLAS VAK LL G ++ VV E + +SG+ Y + + + P R P R+ A+RGM+P ARG AL RL+V+ G+P ++ V P+A R Y +G ++ ++GWK Sbjct: 11 IVVDGSGMIMGRLASVVAKLLLAGWRVNVVNAEKIVLSGDPRMVVESYRTTVLGVKSHFSHKWRPKRPRTPQRLFKHAVRGMLPKNKARGRRALARLRVYVGVPDELKGREFVRFPEA---DASRLSSHYIELGAVARQLGWK 150
BLAST of FC932460 vs. ExPASy Swiss-Prot
Match: RL13_METKA (50S ribosomal protein L13P OS=Methanopyrus kandleri GN=rpl13p PE=3 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 3.369e-15 Identity = 55/150 (36.67%), Postives = 83/150 (55.33%), Query Frame = 1 Query: 67 ESVVVIDGAGHLLGRLASTVAKQLLNGQKIVVVRCEALNISGEFFRAKLKYHAYLRKMTRFNPTRGGPFHFRAPSRILYKAIRGMMPHKTARGAAALERLKVFEGIPPPYD----KKKRVVVPQALRVLRLRPGRKYCTVGRLSHEVGWK 504 E VID +LGRLAS VAK++L G++I V+ E I+G+ K +L+K+ R +P +G PF+ R P I + +RGM+P KT RG A +RL+ + G P + + +RV R+ L Y T+G LS E+G++ Sbjct: 13 EEWTVIDAENAVLGRLASVVAKRILKGERIAVINTEKAIITGKKNTIK---EEWLQKIQRGDPKKG-PFYPRRPDLIFRRVVRGMLPWKTKRGREAFKRLRAYIGTPRWVEEANIEPERVAEADMSRLGHL----WYVTLGELSEELGYQ 154
BLAST of FC932460 vs. ExPASy Swiss-Prot
Match: RL13_METJA (50S ribosomal protein L13P OS=Methanocaldococcus jannaschii GN=rpl13p PE=3 SV=2) HSP 1 Score: 80.4925 bits (197), Expect = 9.802e-15 Identity = 53/145 (36.55%), Postives = 76/145 (52.41%), Query Frame = 1 Query: 73 VVVIDGAGHLLGRLASTVAKQLLNGQKIVVVRCEALNISGEFFRAKLKYHAYLRKMTRFNPTRGGPFHFRAPSRILYKAIRGMMPHKTARGAAALERLKVFEGIPPPYDKKKRVVVPQALRVLRLRPGRKYCTVGRLSHEVGWKY 507 + VID G +LGRLAS VAK++L G++IV+V E + I+G Y K NP R GP R P IL + IR M+P+K +G A +R+KV+ G P K + V + ++ KY T+ LS +G K+ Sbjct: 1 MTVIDAEGAILGRLASEVAKRVLRGEEIVIVNAEMVVITGNKDWIIKTYQEEREKKNVANPRRFGPKFPRRPDDILRRTIRKMLPYKKPKGREAFKRVKVYVGNP------KNLTVDE--KISHKLNTTKYITLAELSKHLGAKF 137
BLAST of FC932460 vs. ExPASy Swiss-Prot
Match: RL13_NANEQ (50S ribosomal protein L13P OS=Nanoarchaeum equitans GN=rpl13p PE=3 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 2.184e-14 Identity = 56/163 (34.36%), Postives = 88/163 (53.99%), Query Frame = 1 Query: 64 FESVVVIDGAGHLLGRLASTVAKQLLNGQKIVVVRCEALNISGEFFRAKLKYHAYLRKMTRFNPTRGGPFHFRAPSRILYKAIRGMMPHKTARGAAALERLKVFEGIPPPYDKKKRVVV--------PQAL--RVLRLRP-----GRKYCTVGRLSHEVGWKY 507 F ++ D G +LGRLAS VA+ L G ++ +V E I+G+ K ++ L+K+ R + +G PF+ + P IL + IRGM+P KTARG L+ +KV+ G+P K ++ + P+AL VL+ +P KY +G LS +G K+ Sbjct: 3 FLGELIYDAEGLVLGRLASIVARNLKRGYRVKIVNAEKAIITGDPNMVKKEW---LQKVKRGDYYKG-PFYPKRPDNILKRVIRGMLPRKTARGRELLKNVKVYIGVPEELKDKPKLGLNLENAKGYPEALIKEVLKAKPKFERGNIKYIELGELSKYLGAKF 161
BLAST of FC932460 vs. ExPASy Swiss-Prot
Match: RL13_SULAC (50S ribosomal protein L13P OS=Sulfolobus acidocaldarius GN=rpl13p PE=3 SV=2) HSP 1 Score: 75.0998 bits (183), Expect = 4.118e-13 Identity = 53/148 (35.81%), Postives = 73/148 (49.32%), Query Frame = 1 Query: 55 MSSFESVVVIDGAGHLLGRLASTVAKQLLNGQKIVVVRCEALNISGEFFRAKLKYHAYLRKMTRFNPTRGGPFHFRAPSRILYKAIRGMMPHKTARGAAALERLKVFEGIPPPYDKKKRVVVPQALRVLRLRPGRKYCTVGRLSHEVG 498 MSS E +V++D +LGR+++ +AK L +G+K+ VV E ISG R Y T NP R G R P I+ + +RGM+P K G LK + GIP + K + A V RL+ KY TV LS +G Sbjct: 1 MSSQEEIVIVDATNQILGRMSTHIAKLLKSGKKVYVVNAEKAIISGPRSRVLEGYSLLFTVKTMQNPYRQGIRRPRNPINIVKRTVRGMLP-KNKLGKQIYRNLKAYIGIPKELEGKSMIRFDDA-DVSRLK--GKYITVAELSRLLG 144
BLAST of FC932460 vs. ExPASy Swiss-Prot
Match: RL13_METMP (50S ribosomal protein L13P OS=Methanococcus maripaludis GN=rpl13p PE=3 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 2.044e-12 Identity = 48/146 (32.88%), Postives = 75/146 (51.37%), Query Frame = 1 Query: 73 VVVIDGAGHLLGRLASTVAKQLLNGQKIVVVRCEALNISGEFFRAKLKYHAYLRKMTRFNPTRGGPFHFRAPSRILYKAIRGMMPHKTARGAAALERLKVFEGIPPPYDKKKRV-VVPQALRVLRLRPGRKYCTVGRLSHEVGWKY 507 +VV++ ++GRLAS VAK L+G++I VV E ++G KY + + NP + GP + R P I+ + IRGM+P+K RG A +++K+ G+P + P + KY TVG LS +G K+ Sbjct: 1 MVVVNAENAVVGRLASYVAKLALSGEEITVVNAEKAIMTGNKEYIFQKYVQLRTRKSISNPKKMGPKYPRRPDDIVRRVIRGMLPYKKPRGVEAFKKIKIEVGVPEGVSIDINLGSAPNTI---------KYVTVGELSQFLGAKF 137
BLAST of FC932460 vs. ExPASy Swiss-Prot
Match: RL13_SULTO (50S ribosomal protein L13P OS=Sulfolobus tokodaii GN=rpl13p PE=3 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 2.669e-12 Identity = 51/144 (35.42%), Postives = 74/144 (51.39%), Query Frame = 1 Query: 67 ESVVVIDGAGHLLGRLASTVAKQLLNGQKIVVVRCEALNISGEFFRAKLKYHAYLRKMTRFNPTRGGPFHFRAPSRILYKAIRGMMPHKTARGAAALERLKVFEGIPPPYDKKKRVVVPQALRVLRLRPGRKYCTVGRLSHEVG 498 E +VV++ +LGR+A+ +AK L+ G+++VVV E ISG R Y NP + R P I+ + +RGM+P K G + L VF GIP Y K K+++ + V RL+ KY TVG LS +G Sbjct: 3 EQLVVVNAENQILGRMATHIAKLLIQGKRVVVVNAEKAIISGPRARVVRGYSLIFSVRKFQNPEKNTIKRPRTPINIVKRTVRGMLP-KNKSGKMMFKNLIVFIGIPAEY-KDKQMIRFEDADVKRLK--GKYITVGELSKLLG 142 The following BLAST results are available for this feature:
BLAST of FC932460 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 55
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Sequences
The
following sequences are available for this feature:
EST sequence >FC932460 ID=FC932460; Name=FC932460; organism=Citrus clementina; type=EST; length=707bpback to top |