FC932460

Overview
NameFC932460
Unique NameFC932460
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length707
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15393 contig Ccv1_Contig15393:12..718. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932460 vs. ExPASy Swiss-Prot
Match: RL13_THENV (50S ribosomal protein L13P OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=rpl13p PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.140e-17
Identity = 58/165 (35.15%), Postives = 90/165 (54.55%), Query Frame = 1
Query:   76 VVIDGAGHLLGRLASTVAKQLLN--GQKIVVVRCEALNISGEFFRAKLKYHAYLRKM----TRFNPTRGGPFHFRAPSRILYKAIRGMMPHKTARGAAALERLKVFEGIPPPYDKKKRVVVPQALRV-LRLRPGRKYCTVGRLSHEV---GWKYQDVVSRLEERR 540
            VVI+  GH+ GRLA+ +AK LL   G +IVVV  E L ++G+    K+    + RK+    T +NP + GP   R P R+  + +RGM+P +   G  AL+RL+V+  +P     +KR+VV +     LR+RP  KY T+  +  +V    W+       L ++R
Sbjct:   17 VVINAEGHIAGRLATYIAKALLEKPGLRIVVVNAEKLVVTGD---EKMVVEWFKRKISEWGTHYNPEKAGPKIPRRPDRVFKRMVRGMLPKRAESGRRALKRLRVYVSVPMELLSRKRLVVYEVPPAKLRMRPLAKYVTLEEVWRQVDPAAWEQWKKAQELWQKR 178          
BLAST of FC932460 vs. ExPASy Swiss-Prot
Match: RL13_PYRIL (50S ribosomal protein L13P OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rpl13p PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.047e-16
Identity = 56/160 (35.00%), Postives = 89/160 (55.62%), Query Frame = 1
Query:   76 VVIDGAGHLLGRLASTVAKQLLN--GQKIVVVRCEALNISGEFFRAKLKYHAYLRKM----TRFNPTRGGPFHFRAPSRILYKAIRGMMPHKTARGAAALERLKVFEGIP-PPYDKKKRVVVPQALRVLRLRPGRKYCTVGRLSHEVGWKYQDVVSRLEE 534
            ++ID  GH+ GRLA+ VAK LL     +IVVV  E L I+G+    K+    + RK+    T +NP + GP   R P R+  + +RGM+P K  RG +AL+RL+V+  IP    ++KK V+    L  L+++P  K+ T+  +   + +   +   R +E
Sbjct:   17 IIIDADGHIAGRLATYVAKALLERPSLRIVVVNAEKLVITGD---RKMVIEWFKRKISEWRTHYNPEKAGPKIPRRPDRVFKRIVRGMLPKKNMRGRSALKRLRVYMSIPLEMLNRKKLVLYEVPLAKLKVKPLAKFVTLEEVWRNIDFAAWEQWKRAQE 173          
BLAST of FC932460 vs. ExPASy Swiss-Prot
Match: RL13_METST (50S ribosomal protein L13P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rpl13p PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.047e-16
Identity = 49/119 (41.18%), Postives = 72/119 (60.50%), Query Frame = 1
Query:   73 VVVIDGAGHLLGRLASTVAKQLLNGQKIVVVRCEALNISGEFFRAKLKYHAYLRKMTRFNPTRGGPFHFRAPSRILYKAIRGMMPHKTARGAAALERLKVFEGIPPPYDKKKRVVVPQA 429
            V +IDG G +LGRLASTV+K+LL+G++I ++  E + ISG       KY   + + +  NP   GP + R P  I  + +RGM+P++ A G AA + LKV  GIP   + ++ V V QA
Sbjct:    2 VTIIDGEGLVLGRLASTVSKRLLDGEEITIINAEKIIISGNKDFIYAKYKQRVDRASISNPRDLGPKYPRRPDDIFRRTVRGMIPYRKAHGRAAYKNLKVNVGIPKELEGQEVVEVEQA 120          
BLAST of FC932460 vs. ExPASy Swiss-Prot
Match: RL13_AERPE (50S ribosomal protein L13P OS=Aeropyrum pernix GN=rpl13p PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.975e-15
Identity = 49/143 (34.27%), Postives = 76/143 (53.15%), Query Frame = 1
Query:   76 VVIDGAGHLLGRLASTVAKQLLNGQKIVVVRCEALNISGEFFRAKLKYHAYLRKMTRFNPTRGGPFHFRAPSRILYKAIRGMMPHKTARGAAALERLKVFEGIPPPYDKKKRVVVPQALRVLRLRPGRKYCTVGRLSHEVGWK 504
            +V+DG+G ++GRLAS VAK LL G ++ VV  E + +SG+       Y   +  +      +  P   R P R+   A+RGM+P   ARG  AL RL+V+ G+P     ++ V  P+A      R    Y  +G ++ ++GWK
Sbjct:   11 IVVDGSGMIMGRLASVVAKLLLAGWRVNVVNAEKIVLSGDPRMVVESYRTTVLGVKSHFSHKWRPKRPRTPQRLFKHAVRGMLPKNKARGRRALARLRVYVGVPDELKGREFVRFPEA---DASRLSSHYIELGAVARQLGWK 150          
BLAST of FC932460 vs. ExPASy Swiss-Prot
Match: RL13_METKA (50S ribosomal protein L13P OS=Methanopyrus kandleri GN=rpl13p PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.369e-15
Identity = 55/150 (36.67%), Postives = 83/150 (55.33%), Query Frame = 1
Query:   67 ESVVVIDGAGHLLGRLASTVAKQLLNGQKIVVVRCEALNISGEFFRAKLKYHAYLRKMTRFNPTRGGPFHFRAPSRILYKAIRGMMPHKTARGAAALERLKVFEGIPPPYD----KKKRVVVPQALRVLRLRPGRKYCTVGRLSHEVGWK 504
            E   VID    +LGRLAS VAK++L G++I V+  E   I+G+    K     +L+K+ R +P +G PF+ R P  I  + +RGM+P KT RG  A +RL+ + G P   +    + +RV      R+  L     Y T+G LS E+G++
Sbjct:   13 EEWTVIDAENAVLGRLASVVAKRILKGERIAVINTEKAIITGKKNTIK---EEWLQKIQRGDPKKG-PFYPRRPDLIFRRVVRGMLPWKTKRGREAFKRLRAYIGTPRWVEEANIEPERVAEADMSRLGHL----WYVTLGELSEELGYQ 154          
BLAST of FC932460 vs. ExPASy Swiss-Prot
Match: RL13_METJA (50S ribosomal protein L13P OS=Methanocaldococcus jannaschii GN=rpl13p PE=3 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 9.802e-15
Identity = 53/145 (36.55%), Postives = 76/145 (52.41%), Query Frame = 1
Query:   73 VVVIDGAGHLLGRLASTVAKQLLNGQKIVVVRCEALNISGEFFRAKLKYHAYLRKMTRFNPTRGGPFHFRAPSRILYKAIRGMMPHKTARGAAALERLKVFEGIPPPYDKKKRVVVPQALRVLRLRPGRKYCTVGRLSHEVGWKY 507
            + VID  G +LGRLAS VAK++L G++IV+V  E + I+G        Y     K    NP R GP   R P  IL + IR M+P+K  +G  A +R+KV+ G P      K + V +  ++       KY T+  LS  +G K+
Sbjct:    1 MTVIDAEGAILGRLASEVAKRVLRGEEIVIVNAEMVVITGNKDWIIKTYQEEREKKNVANPRRFGPKFPRRPDDILRRTIRKMLPYKKPKGREAFKRVKVYVGNP------KNLTVDE--KISHKLNTTKYITLAELSKHLGAKF 137          
BLAST of FC932460 vs. ExPASy Swiss-Prot
Match: RL13_NANEQ (50S ribosomal protein L13P OS=Nanoarchaeum equitans GN=rpl13p PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.184e-14
Identity = 56/163 (34.36%), Postives = 88/163 (53.99%), Query Frame = 1
Query:   64 FESVVVIDGAGHLLGRLASTVAKQLLNGQKIVVVRCEALNISGEFFRAKLKYHAYLRKMTRFNPTRGGPFHFRAPSRILYKAIRGMMPHKTARGAAALERLKVFEGIPPPYDKKKRVVV--------PQAL--RVLRLRP-----GRKYCTVGRLSHEVGWKY 507
            F   ++ D  G +LGRLAS VA+ L  G ++ +V  E   I+G+    K ++   L+K+ R +  +G PF+ + P  IL + IRGM+P KTARG   L+ +KV+ G+P     K ++ +        P+AL   VL+ +P       KY  +G LS  +G K+
Sbjct:    3 FLGELIYDAEGLVLGRLASIVARNLKRGYRVKIVNAEKAIITGDPNMVKKEW---LQKVKRGDYYKG-PFYPKRPDNILKRVIRGMLPRKTARGRELLKNVKVYIGVPEELKDKPKLGLNLENAKGYPEALIKEVLKAKPKFERGNIKYIELGELSKYLGAKF 161          
BLAST of FC932460 vs. ExPASy Swiss-Prot
Match: RL13_SULAC (50S ribosomal protein L13P OS=Sulfolobus acidocaldarius GN=rpl13p PE=3 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 4.118e-13
Identity = 53/148 (35.81%), Postives = 73/148 (49.32%), Query Frame = 1
Query:   55 MSSFESVVVIDGAGHLLGRLASTVAKQLLNGQKIVVVRCEALNISGEFFRAKLKYHAYLRKMTRFNPTRGGPFHFRAPSRILYKAIRGMMPHKTARGAAALERLKVFEGIPPPYDKKKRVVVPQALRVLRLRPGRKYCTVGRLSHEVG 498
            MSS E +V++D    +LGR+++ +AK L +G+K+ VV  E   ISG   R    Y       T  NP R G    R P  I+ + +RGM+P K   G      LK + GIP   + K  +    A  V RL+   KY TV  LS  +G
Sbjct:    1 MSSQEEIVIVDATNQILGRMSTHIAKLLKSGKKVYVVNAEKAIISGPRSRVLEGYSLLFTVKTMQNPYRQGIRRPRNPINIVKRTVRGMLP-KNKLGKQIYRNLKAYIGIPKELEGKSMIRFDDA-DVSRLK--GKYITVAELSRLLG 144          
BLAST of FC932460 vs. ExPASy Swiss-Prot
Match: RL13_METMP (50S ribosomal protein L13P OS=Methanococcus maripaludis GN=rpl13p PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.044e-12
Identity = 48/146 (32.88%), Postives = 75/146 (51.37%), Query Frame = 1
Query:   73 VVVIDGAGHLLGRLASTVAKQLLNGQKIVVVRCEALNISGEFFRAKLKYHAYLRKMTRFNPTRGGPFHFRAPSRILYKAIRGMMPHKTARGAAALERLKVFEGIPPPYDKKKRV-VVPQALRVLRLRPGRKYCTVGRLSHEVGWKY 507
            +VV++    ++GRLAS VAK  L+G++I VV  E   ++G       KY     + +  NP + GP + R P  I+ + IRGM+P+K  RG  A +++K+  G+P        +   P  +         KY TVG LS  +G K+
Sbjct:    1 MVVVNAENAVVGRLASYVAKLALSGEEITVVNAEKAIMTGNKEYIFQKYVQLRTRKSISNPKKMGPKYPRRPDDIVRRVIRGMLPYKKPRGVEAFKKIKIEVGVPEGVSIDINLGSAPNTI---------KYVTVGELSQFLGAKF 137          
BLAST of FC932460 vs. ExPASy Swiss-Prot
Match: RL13_SULTO (50S ribosomal protein L13P OS=Sulfolobus tokodaii GN=rpl13p PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.669e-12
Identity = 51/144 (35.42%), Postives = 74/144 (51.39%), Query Frame = 1
Query:   67 ESVVVIDGAGHLLGRLASTVAKQLLNGQKIVVVRCEALNISGEFFRAKLKYHAYLRKMTRFNPTRGGPFHFRAPSRILYKAIRGMMPHKTARGAAALERLKVFEGIPPPYDKKKRVVVPQALRVLRLRPGRKYCTVGRLSHEVG 498
            E +VV++    +LGR+A+ +AK L+ G+++VVV  E   ISG   R    Y          NP +      R P  I+ + +RGM+P K   G    + L VF GIP  Y K K+++  +   V RL+   KY TVG LS  +G
Sbjct:    3 EQLVVVNAENQILGRMATHIAKLLIQGKRVVVVNAEKAIISGPRARVVRGYSLIFSVRKFQNPEKNTIKRPRTPINIVKRTVRGMLP-KNKSGKMMFKNLIVFIGIPAEY-KDKQMIRFEDADVKRLK--GKYITVGELSKLLG 142          
The following BLAST results are available for this feature:
BLAST of FC932460 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
RL13_THENV6.140e-1735.1550S ribosomal protein L13P OS=Thermoproteus neutro... [more]
RL13_PYRIL1.047e-1635.0050S ribosomal protein L13P OS=Pyrobaculum islandic... [more]
RL13_METST1.047e-1641.1850S ribosomal protein L13P OS=Methanosphaera stadt... [more]
RL13_AERPE1.975e-1534.2750S ribosomal protein L13P OS=Aeropyrum pernix GN=... [more]
RL13_METKA3.369e-1536.6750S ribosomal protein L13P OS=Methanopyrus kandler... [more]
RL13_METJA9.802e-1536.5550S ribosomal protein L13P OS=Methanocaldococcus j... [more]
RL13_NANEQ2.184e-1434.3650S ribosomal protein L13P OS=Nanoarchaeum equitan... [more]
RL13_SULAC4.118e-1335.8150S ribosomal protein L13P OS=Sulfolobus acidocald... [more]
RL13_METMP2.044e-1232.8850S ribosomal protein L13P OS=Methanococcus maripa... [more]
RL13_SULTO2.669e-1235.4250S ribosomal protein L13P OS=Sulfolobus tokodaii ... [more]

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Properties
Property NameValue
Genbank descriptionC34208G12EF PostHarveN Citrus clementina cDNA clone C34208G12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932460 ID=FC932460; Name=FC932460; organism=Citrus clementina; type=EST; length=707bp
GACACGACAACAACCGCCGACAACATCCATCCCACGGGACATTAGATCAC
CAGGATGTCCTCCTTCGAATCAGTGGTCGTCATCGACGGCGCAGGACACC
TCCTCGGTCGTCTGGCCAGCACTGTCGCCAAGCAGCTGCTCAACGGTCAG
AAGATCGTCGTCGTGAGATGTGAGGCTCTCAACATCTCCGGCGAGTTCTT
CCGCGCGAAGCTCAAGTACCACGCCTACCTTCGCAAGATGACTCGTTTCA
ACCCCACCCGTGGTGGTCCCTTCCACTTCCGCGCTCCTTCCCGTATCCTC
TACAAGGCCATCCGCGGCATGATGCCCCACAAGACCGCCCGTGGTGCCGC
CGCTCTGGAGCGCCTCAAGGTCTTCGAGGGTATTCCCCCTCCCTACGACA
AGAAGAAGCGTGTCGTTGTTCCCCAGGCTCTCCGTGTCCTGCGTCTCCGC
CCCGGTCGCAAGTACTGCACCGTCGGCCGTCTCAGCCACGAGGTTGGCTG
GAAGTACCAGGATGTTGTTTCCAGACTCGAGGAGCGCAGAAAGGTCAAGA
GCAAGGCCTACTACGAGCGCAAGAAGGCCGCTCGCCGTGTCCTTGCCAAG
GCCGAGCAGGGAGCGAACGTGGACAGCCAGACCAAGACCCAGCTTGCTCA
GTTTGGCTACTAGATACCTTTAGCGTGGCTGGTTGTTGTGTCNAGCGATG
GTTCTGG
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