FC932461

Overview
NameFC932461
Unique NameFC932461
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length719
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC932461_ssr47 microsatellite FC932461_ssr47:47..64. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig15373 contig Ccv1_Contig15373:1..713. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932461 vs. ExPASy Swiss-Prot
Match: IDHC_HUMAN (Isocitrate dehydrogenase [NADP] cytoplasmic OS=Homo sapiens GN=IDH1 PE=1 SV=2)

HSP 1 Score: 241.891 bits (616), Expect = 2.596e-63
Identity = 112/173 (64.74%), Postives = 139/173 (80.35%), Query Frame = 3
Query:  201 IVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGRTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVALSM 719
            +VEM GDEMTR+ W+ IK+KLIFP++ELD+  +DLG+ NRDAT+D+VT ++AEA  K+NV +KCATITPDE RV+EF LKQMWKSPNGTIRNIL GTVFRE IICKN+PRL+ G  KPI IGRHA+GDQYRATD V+ GPGK+++ + P    +K    V+NF   GGVA+ M
Sbjct:   10 VVEMQGDEMTRIIWELIKEKLIFPYVELDLHSYDLGIENRDATNDQVTKDAAEAIKKHNVGVKCATITPDEKRVEEFKLKQMWKSPNGTIRNILGGTVFREAIICKNIPRLVSGWVKPIIIGRHAYGDQYRATDFVVPGPGKVEITYTPSDGTQKVTYLVHNFEEGGGVAMGM 182          
BLAST of FC932461 vs. ExPASy Swiss-Prot
Match: IDHC_MICME (Isocitrate dehydrogenase [NADP] cytoplasmic OS=Microtus mexicanus GN=IDH1 PE=2 SV=1)

HSP 1 Score: 241.506 bits (615), Expect = 3.390e-63
Identity = 112/173 (64.74%), Postives = 139/173 (80.35%), Query Frame = 3
Query:  201 IVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGRTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVALSM 719
            +VEM GDEMTR+ W+ IK+KLI P++ELD+  +DLG+ NRDAT+D+VT ++AEA  KYNV +KCATITPDE RV+EF LKQMWKSPNGTIRNIL GTVFRE IICKN+PRL+ G  KPI IGRHA+GDQYRATD V+ GPGK+++ F P+   +K    V++F   GGVA+ M
Sbjct:   10 VVEMQGDEMTRIIWELIKEKLILPYVELDLHSYDLGIENRDATNDQVTKDAAEAIKKYNVGVKCATITPDEKRVEEFKLKQMWKSPNGTIRNILGGTVFREAIICKNIPRLVTGWVKPIIIGRHAYGDQYRATDFVVPGPGKVEITFTPKDGSQKVTYLVHSFEEGGGVAMGM 182          
BLAST of FC932461 vs. ExPASy Swiss-Prot
Match: IDHP_YEAST (Isocitrate dehydrogenase [NADP], mitochondrial OS=Saccharomyces cerevisiae GN=IDP1 PE=1 SV=1)

HSP 1 Score: 240.35 bits (612), Expect = 7.552e-63
Identity = 117/190 (61.58%), Postives = 145/190 (76.32%), Query Frame = 3
Query:  156 TKKKMAFQKIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGRTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKD--EKTELEVYNFTGEGGVALSM 719
            T +  AF KIKV  P+VE+DGDEMTR+ W  IK KLI P+L++D+KY+DL + +RDAT DK+T ++AEA  KY V IKCATITPDEARVKEF L +MWKSPNGTIRNIL GTVFREPI+   +PRL+P   KPI IGRHA GDQY+ATDT+I GPG L+LV+ P      +   L+VY++ G  GVA++M
Sbjct:   11 TSRLAAFSKIKVKQPVVELDGDEMTRIIWDKIKKKLILPYLDVDLKYYDLSVESRDATSDKITQDAAEAIKKYGVGIKCATITPDEARVKEFNLHKMWKSPNGTIRNILGGTVFREPIVIPRIPRLVPRWEKPIIIGRHAHGDQYKATDTLIPGPGSLELVYKPSDPTTAQPQTLKVYDYKG-SGVAMAM 199          
BLAST of FC932461 vs. ExPASy Swiss-Prot
Match: IDHC_RAT (Isocitrate dehydrogenase [NADP] cytoplasmic OS=Rattus norvegicus GN=Idh1 PE=1 SV=1)

HSP 1 Score: 240.35 bits (612), Expect = 7.552e-63
Identity = 111/173 (64.16%), Postives = 139/173 (80.35%), Query Frame = 3
Query:  201 IVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGRTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVALSM 719
            +VEM GDEMTR+ W+ IK+KLI P++ELD+  +DLG+ NRDAT+D+VT ++AEA  KYNV +KCATITPDE RV+EF LKQMWKSPNGTIRNIL GTVFRE IICKN+PRL+ G  KPI IGRHA+GDQYRATD V+ GPGK+++ + P+   +K    V++F   GGVA+ M
Sbjct:   10 VVEMQGDEMTRIIWELIKEKLILPYVELDLHSYDLGIENRDATNDQVTKDAAEAIKKYNVGVKCATITPDEKRVEEFKLKQMWKSPNGTIRNILGGTVFREAIICKNIPRLVTGWVKPIIIGRHAYGDQYRATDFVVPGPGKVEITYTPKDGSQKVTYLVHDFEEGGGVAMGM 182          
BLAST of FC932461 vs. ExPASy Swiss-Prot
Match: IDHC_MOUSE (Isocitrate dehydrogenase [NADP] cytoplasmic OS=Mus musculus GN=Idh1 PE=1 SV=1)

HSP 1 Score: 240.35 bits (612), Expect = 7.552e-63
Identity = 111/173 (64.16%), Postives = 139/173 (80.35%), Query Frame = 3
Query:  201 IVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGRTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVALSM 719
            +VEM GDEMTR+ W+ IK+KLI P++ELD+  +DLG+ NRDAT+D+VT ++AEA  KYNV +KCATITPDE RV+EF LKQMWKSPNGTIRNIL GTVFRE IICKN+PRL+ G  KPI IGRHA+GDQYRATD V+ GPGK+++ + P+   +K    V++F   GGVA+ M
Sbjct:   10 VVEMQGDEMTRIIWELIKEKLILPYVELDLHSYDLGIENRDATNDQVTKDAAEAIKKYNVGVKCATITPDEKRVEEFKLKQMWKSPNGTIRNILGGTVFREAIICKNIPRLVTGWVKPIIIGRHAYGDQYRATDFVVPGPGKVEITYTPKDGTQKVTYMVHDFEEGGGVAMGM 182          
BLAST of FC932461 vs. ExPASy Swiss-Prot
Match: IDHC_MICOH (Isocitrate dehydrogenase [NADP] cytoplasmic OS=Microtus ochrogaster GN=IDH1 PE=3 SV=1)

HSP 1 Score: 240.35 bits (612), Expect = 7.552e-63
Identity = 111/173 (64.16%), Postives = 139/173 (80.35%), Query Frame = 3
Query:  201 IVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGRTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVALSM 719
            +VEM GDEMTR+ W+ IK+KLI P++ELD+  +DLG+ NRDAT+D+VT ++AEA  KYNV +KCATITPDE RV+EF LKQMWKSPNGTIRNIL GTVFRE IICKN+PRL+ G  KPI IGRHA+GDQYRATD V+ GPGK+++ + P+   +K    V++F   GGVA+ M
Sbjct:   10 VVEMQGDEMTRIIWELIKEKLILPYVELDLHSYDLGIENRDATNDQVTKDAAEAIKKYNVGVKCATITPDEKRVEEFKLKQMWKSPNGTIRNILGGTVFREAIICKNIPRLVTGWVKPIIIGRHAYGDQYRATDFVVPGPGKVEITYTPKDGSQKVTYLVHSFEEGGGVAMGM 182          
BLAST of FC932461 vs. ExPASy Swiss-Prot
Match: IDH_MYCTU (Isocitrate dehydrogenase [NADP] OS=Mycobacterium tuberculosis GN=icd PE=3 SV=1)

HSP 1 Score: 233.032 bits (593), Expect = 1.206e-60
Identity = 110/180 (61.11%), Postives = 137/180 (76.11%), Query Frame = 3
Query:  180 KIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGRTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVALSM 719
            KIKV+ P+VE+DGDEMTRV WK IKD LI P+L++ + Y+DLG+ +RDATDD+VT+++A A  K+ V +KCATITPDEARV+EF LK+MW SPNGTIRNIL GT+FREPI+  NVPRL+PG TKPI IGRHAFGDQYRAT+  +  PG + L F P         E+ +   +GGV L M
Sbjct:    6 KIKVSGPVVELDGDEMTRVIWKLIKDMLILPYLDIRLDYYDLGIEHRDATDDQVTIDAAYAIKKHGVGVKCATITPDEARVEEFNLKKMWLSPNGTIRNILGGTIFREPIVISNVPRLVPGWTKPIVIGRHAFGDQYRATNFKVDQPGTVTLTFTPADGSAPIVHEMVSIPEDGGVVLGM 185          
BLAST of FC932461 vs. ExPASy Swiss-Prot
Match: IDH_MYCBO (Isocitrate dehydrogenase [NADP] OS=Mycobacterium bovis GN=icd PE=3 SV=1)

HSP 1 Score: 233.032 bits (593), Expect = 1.206e-60
Identity = 110/180 (61.11%), Postives = 137/180 (76.11%), Query Frame = 3
Query:  180 KIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGRTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVALSM 719
            KIKV+ P+VE+DGDEMTRV WK IKD LI P+L++ + Y+DLG+ +RDATDD+VT+++A A  K+ V +KCATITPDEARV+EF LK+MW SPNGTIRNIL GT+FREPI+  NVPRL+PG TKPI IGRHAFGDQYRAT+  +  PG + L F P         E+ +   +GGV L M
Sbjct:    6 KIKVSGPVVELDGDEMTRVIWKLIKDMLILPYLDIRLDYYDLGIEHRDATDDQVTIDAAYAIKKHGVGVKCATITPDEARVEEFNLKKMWLSPNGTIRNILGGTIFREPIVISNVPRLVPGWTKPIVIGRHAFGDQYRATNFKVDQPGTVTLTFTPADGSAPIVHEMVSIPEDGGVVLGM 185          
BLAST of FC932461 vs. ExPASy Swiss-Prot
Match: IDH_SPHYA (Isocitrate dehydrogenase [NADP] OS=Sphingomonas yanoikuyae GN=icd PE=3 SV=1)

HSP 1 Score: 226.483 bits (576), Expect = 1.128e-58
Identity = 107/180 (59.44%), Postives = 139/180 (77.22%), Query Frame = 3
Query:  180 KIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGRTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVALSM 719
            KIKV NP+VE+DGDEMTR+ W+ I+++LI P+L++D+KY+DL +  RD T D++T+++A A  +Y V +KCATITPDEARV+EF LK+MWKSPNGTIRNIL G VFREPI+ KNVPRL+PG T PI +GRHAFGDQY+ATD  + G G L + +V     E+ E EV+ F    GVA+ M
Sbjct:    3 KIKVKNPVVEIDGDEMTRIIWEWIRERLILPYLDVDLKYYDLSVEKRDETSDQITIDAANAIKEYGVGVKCATITPDEARVEEFGLKKMWKSPNGTIRNILGGVVFREPIVIKNVPRLVPGWTDPIVVGRHAFGDQYKATDFKVPGAGTLTMKWVGT-NGEELEYEVFEFP-SAGVAMGM 180          
BLAST of FC932461 vs. ExPASy Swiss-Prot
Match: IDHC_DICDI (Isocitrate dehydrogenase [NADP] cytoplasmic OS=Dictyostelium discoideum GN=idhC PE=1 SV=1)

HSP 1 Score: 225.713 bits (574), Expect = 1.925e-58
Identity = 107/181 (59.12%), Postives = 136/181 (75.14%), Query Frame = 3
Query:  177 QKIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFVLKQMWKSPNGTIRNILNGTVFREPIICKNVPRLIPGRTKPICIGRHAFGDQYRATDTVIQGPGKLKLVFVPEGKDEKTELEVYNFTGEGGVALSM 719
            +KI V+NP+  + GDE TRV W  I+ KLIFPFL+L ++ +DLG+  RD T+D+VT+++A A  +  V IKCATITPDEARV EF LK+MWKSPNGTIRN L GT+FREPI+CKNVPRL+    K I IGRHAFGDQYRATD V++G GKL+L + P       + +V++F  +GGVAL M
Sbjct:    3 EKIIVSNPVANLLGDEQTRVIWDLIEKKLIFPFLDLKVETYDLGIEYRDKTNDQVTIDAANAIKRLKVGIKCATITPDEARVTEFGLKEMWKSPNGTIRNTLGGTLFREPIVCKNVPRLVTCWNKSIVIGRHAFGDQYRATDFVVKGAGKLELTYTPADGSAPQKFQVFDFPSDGGVALGM 183          
The following BLAST results are available for this feature:
BLAST of FC932461 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
IDHC_HUMAN2.596e-6364.74Isocitrate dehydrogenase [NADP] cytoplasmic OS=Hom... [more]
IDHC_MICME3.390e-6364.74Isocitrate dehydrogenase [NADP] cytoplasmic OS=Mic... [more]
IDHP_YEAST7.552e-6361.58Isocitrate dehydrogenase [NADP], mitochondrial OS=... [more]
IDHC_RAT7.552e-6364.16Isocitrate dehydrogenase [NADP] cytoplasmic OS=Rat... [more]
IDHC_MOUSE7.552e-6364.16Isocitrate dehydrogenase [NADP] cytoplasmic OS=Mus... [more]
IDHC_MICOH7.552e-6364.16Isocitrate dehydrogenase [NADP] cytoplasmic OS=Mic... [more]
IDH_MYCTU1.206e-6061.11Isocitrate dehydrogenase [NADP] OS=Mycobacterium t... [more]
IDH_MYCBO1.206e-6061.11Isocitrate dehydrogenase [NADP] OS=Mycobacterium b... [more]
IDH_SPHYA1.128e-5859.44Isocitrate dehydrogenase [NADP] OS=Sphingomonas ya... [more]
IDHC_DICDI1.925e-5859.12Isocitrate dehydrogenase [NADP] cytoplasmic OS=Dic... [more]

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Properties
Property NameValue
Genbank descriptionC34208H01EF PostHarveN Citrus clementina cDNA clone C34208H01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932461 ID=FC932461; Name=FC932461; organism=Citrus clementina; type=EST; length=719bp
GGAGTCCTGGTCAAACTCGAAAGCAGAAGCATTTCAATTTTCATAGTATT
ATTATTATTATTATTGCTTCTTGCTGCTTCTTTTTGTCCACACGACCTCG
GCACCTCCGCTCTGACCCTATTATCTCTCTCTAGTTGTGAATCAACCGAA
ACTGAACAAAGAAGAAAATGGCTTTTCAGAAGATCAAGGTCGCCAATCCC
ATCGTCGAAATGGACGGAGATGAAATGACTCGAGTTTTCTGGAAATCGAT
TAAGGATAAGCTTATTTTCCCTTTTCTGGAGTTGGACATAAAGTACTTCG
ACCTTGGCCTTCCGAATCGTGATGCAACTGATGACAAAGTTACCGTTGAA
AGTGCAGAAGCCACTCTCAAGTACAATGTAGCGATCAAGTGTGCTACTAT
TACTCCAGATGAAGCTCGTGTTAAGGAATTTGTCTTGAAACAGATGTGGA
AGAGTCCAAATGGGACAATCAGGAATATTTTGAATGGCACTGTTTTCAGA
GAACCAATCATTTGCAAAAATGTCCCTCGGCTTATTCCAGGCCGGACAAA
GCCCATATGCATTGGCAGGCATGCTTTTGGTGATCAATATCGAGCAACTG
ATACAGTTATTCAAGGACCTGGCAAACTTAAATTGGTGTTTGTACCAGAG
GGAAAAGATGAGAAGACAGAGTTAGAGGTTTACAACTTTACGGGTGAGGG
TGGAGTTGCATTGTCCATG
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