FC932465

Overview
NameFC932465
Unique NameFC932465
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length750
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15516 contig Ccv1_Contig15516:1..750. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932465 vs. ExPASy Swiss-Prot
Match: SUS3_ORYSJ (Sucrose synthase 3 OS=Oryza sativa subsp. japonica GN=SUS3 PE=1 SV=2)

HSP 1 Score: 246.128 bits (627), Expect = 1.486e-64
Identity = 118/193 (61.14%), Postives = 153/193 (79.27%), Query Frame = 2
Query:  131 LSRIPSIRERVEDTLSVHRNELVSLLSRYVAQGKGILQPHVLIDELDNIFGDDEGRQNLRDGPFSEVIKSAQEAIVLPPFVAIAVRPRPGVWEYVRVNVYELSVEQLSVSEYLHFKEELVDAAFNERFVLELDFEPFNATFPRPNRSSSIGNGVQFLNRHLSSSMFRNKDCLEPLLDFLRAHKYKGHLLMLND 709
            L+R+ S+RER+ D+LS H NELV++ SR V QGKG+LQPH +I E +    + E R+ L+D    +V++ AQEAIV+PP++A+A+RPRPGVWEY+R+NV +L VE+LSV EYL FKE+LVD +    FVLELDFEPFNA+FPRP+ S SIGNGVQFLNRHLSS +F +K+ + PLL+FLRAH YKG  +MLND
Sbjct:   10 LTRLHSMRERIGDSLSAHTNELVAVFSRLVNQGKGMLQPHQIIAEYNAAIPEGE-REKLKDSALEDVLRGAQEAIVIPPWIALAIRPRPGVWEYLRINVSQLGVEELSVPEYLQFKEQLVDGSTQNNFVLELDFEPFNASFPRPSLSKSIGNGVQFLNRHLSSKLFHDKESMYPLLNFLRAHNYKGMTMMLND 201          
BLAST of FC932465 vs. ExPASy Swiss-Prot
Match: SUS1_ORYSJ (Sucrose synthase 1 OS=Oryza sativa subsp. japonica GN=SUS1 PE=1 SV=1)

HSP 1 Score: 245.358 bits (625), Expect = 2.535e-64
Identity = 120/193 (62.18%), Postives = 153/193 (79.27%), Query Frame = 2
Query:  131 LSRIPSIRERVEDTLSVHRNELVSLLSRYVAQGKGILQPHVLIDELDNIFGDDEGRQNLRDGPFSEVIKSAQEAIVLPPFVAIAVRPRPGVWEYVRVNVYELSVEQLSVSEYLHFKEELVDAAFNERFVLELDFEPFNATFPRPNRSSSIGNGVQFLNRHLSSSMFRNKDCLEPLLDFLRAHKYKGHLLMLND 709
            LSR+ S+RER+ D+LS H NELV++ +R V  GKG+LQ H +I E +N   + + R+ L+DG F +V++SAQE IV+ P+VA+A+RPRPGVWEYVRVNV EL+VE L+V EYL FKE+LV+   N  FVLELDFEPFNA+FPRP+ S SIGNGVQFLNRHLSS +F +K+ + PLL+FLRAH YKG  +MLND
Sbjct:   10 LSRLHSVRERIGDSLSAHPNELVAVFTRLVNLGKGMLQAHQIIAEYNNAISEAD-REKLKDGAFEDVLRSAQEGIVISPWVALAIRPRPGVWEYVRVNVSELAVELLTVPEYLQFKEQLVEEGTNNNFVLELDFEPFNASFPRPSLSKSIGNGVQFLNRHLSSKLFHDKESMYPLLNFLRAHNYKGMTMMLND 201          
BLAST of FC932465 vs. ExPASy Swiss-Prot
Match: SUS1_SOLTU (Sucrose synthase OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 243.432 bits (620), Expect = 9.634e-64
Identity = 122/198 (61.62%), Postives = 152/198 (76.77%), Query Frame = 2
Query:  116 MAAPKLSRIPSIRERVEDTLSVHRNELVSLLSRYVAQGKGILQPHVLIDELDNIFGDDEGRQNLRDGPFSEVIKSAQEAIVLPPFVAIAVRPRPGVWEYVRVNVYELSVEQLSVSEYLHFKEELVDAAFNERFVLELDFEPFNATFPRPNRSSSIGNGVQFLNRHLSSSMFRNKDCLEPLLDFLRAHKYKGHLLMLND 709
            MA   L+R+ S+RERV+ TL+ HRNE++  LSR  + GKGIL+PH L+ E D I  DD+ + N  +  F E++KS QEAIVLPP+VA+A+R RPGVWEY+RVNV  L VE+LSV EYL FKEELVD A N  FVLELDFEPF A+FP+P  + SIGNGV+FLNRHLS+ MF +K+ + PLL+FLRAH YKG  +MLND
Sbjct:    1 MAERVLTRVHSLRERVDATLAAHRNEILLFLSRIESHGKGILKPHELLAEFDAIRQDDKNKLN--EHAFEELLKSTQEAIVLPPWVALAIRLRPGVWEYIRVNVNALVVEELSVPEYLQFKEELVDGASNGNFVLELDFEPFTASFPKPTLTKSIGNGVEFLNRHLSAKMFHDKESMTPLLEFLRAHHYKGKTMMLND 196          
BLAST of FC932465 vs. ExPASy Swiss-Prot
Match: SUS1_HORVU (Sucrose synthase 1 OS=Hordeum vulgare GN=SS1 PE=1 SV=1)

HSP 1 Score: 241.506 bits (615), Expect = 3.661e-63
Identity = 118/196 (60.20%), Postives = 155/196 (79.08%), Query Frame = 2
Query:  122 APKLSRIPSIRERVEDTLSVHRNELVSLLSRYVAQGKGILQPHVLIDELDNIFGDDEGRQNLRDGPFSEVIKSAQEAIVLPPFVAIAVRPRPGVWEYVRVNVYELSVEQLSVSEYLHFKEELVDAAFNERFVLELDFEPFNATFPRPNRSSSIGNGVQFLNRHLSSSMFRNKDCLEPLLDFLRAHKYKGHLLMLND 709
            A KL+R+ S+RER+  T S H NEL++L SRYV QGKG+LQ H L+ E D +F  D+ +      PF +++++AQEAIVLPP+VA+A+RPR GVW+Y+RVNV EL+VE+L+VSEYL FKE+LVD   + +FVLELDFEPFNA+FPRP+ S S G GVQFLNRHLSS +F++K+ L PLL+FL+AH YKG  ++LND
Sbjct:    2 AAKLTRLHSLRERLGATFSSHPNELIALFSRYVHQGKGMLQRHQLLAEFDALFESDKEKY----APFEDILRAAQEAIVLPPWVALAIRPRTGVWDYIRVNVSELAVEELTVSEYLAFKEQLVDEHASRKFVLELDFEPFNASFPRPSMSKSYGKGVQFLNRHLSSKLFQDKESLYPLLNFLKAHNYKGTTMILND 193          
BLAST of FC932465 vs. ExPASy Swiss-Prot
Match: SUSY_SOLLC (Sucrose synthase OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 240.736 bits (613), Expect = 6.245e-63
Identity = 122/198 (61.62%), Postives = 150/198 (75.76%), Query Frame = 2
Query:  116 MAAPKLSRIPSIRERVEDTLSVHRNELVSLLSRYVAQGKGILQPHVLIDELDNIFGDDEGRQNLRDGPFSEVIKSAQEAIVLPPFVAIAVRPRPGVWEYVRVNVYELSVEQLSVSEYLHFKEELVDAAFNERFVLELDFEPFNATFPRPNRSSSIGNGVQFLNRHLSSSMFRNKDCLEPLLDFLRAHKYKGHLLMLND 709
            MA   L+R+  +RERV+ TL  HRNE++  LSR  + GKGIL+PH L+ E D I  DD+ + N  +  F E++KS QEAIVLPP+VA+A+R RPGVWEYVRVNV  L VE+LSV EYL FKEELVD A N  FVLELDFEPF A+FP+P  + SIGNGV+FLNRHLS+ MF +K+ + PLL+FLRAH YKG  +MLND
Sbjct:    1 MAERVLTRVHRLRERVDATLCAHRNEILLFLSRIESHGKGILKPHELLAEFDAIRQDDKDKLN--EHAFEELLKSTQEAIVLPPWVALAIRLRPGVWEYVRVNVNALVVEELSVPEYLQFKEELVDGASNGNFVLELDFEPFTASFPKPTLTKSIGNGVEFLNRHLSAKMFHDKESMAPLLEFLRAHHYKGKTMMLND 196          
BLAST of FC932465 vs. ExPASy Swiss-Prot
Match: SUS2_HORVU (Sucrose synthase 2 OS=Hordeum vulgare GN=SS2 PE=1 SV=1)

HSP 1 Score: 239.965 bits (611), Expect = 1.065e-62
Identity = 117/193 (60.62%), Postives = 151/193 (78.24%), Query Frame = 2
Query:  131 LSRIPSIRERVEDTLSVHRNELVSLLSRYVAQGKGILQPHVLIDELDNIFGDDEGRQNLRDGPFSEVIKSAQEAIVLPPFVAIAVRPRPGVWEYVRVNVYELSVEQLSVSEYLHFKEELVDAAFNERFVLELDFEPFNATFPRPNRSSSIGNGVQFLNRHLSSSMFRNKDCLEPLLDFLRAHKYKGHLLMLND 709
            LSR+ S+RER+  +LS H NELV++ SR V QGKG+LQPH +  E +    + E R+ L++ PF ++++ AQEAIV+PP+VA+A+RPRPGVWEYVRVNV EL VE+LSV  YL FKE+L + + +  FVLELDF PFNA+FPRP+ S SIGNGVQFLNRHLSS +F +K+ + PLL+FLRAH YKG  +MLND
Sbjct:   10 LSRVHSVRERIGHSLSAHTNELVAVFSRLVNQGKGMLQPHQITAEYNAAIPEAE-REKLKNTPFEDLLRGAQEAIVIPPWVALAIRPRPGVWEYVRVNVSELGVEELSVLRYLQFKEQLANGSTDNNFVLELDFGPFNASFPRPSLSKSIGNGVQFLNRHLSSKLFHDKESMYPLLNFLRAHNYKGMTMMLND 201          
BLAST of FC932465 vs. ExPASy Swiss-Prot
Match: SUS2_SOLTU (Sucrose synthase OS=Solanum tuberosum PE=3 SV=1)

HSP 1 Score: 237.654 bits (605), Expect = 5.287e-62
Identity = 117/198 (59.09%), Postives = 152/198 (76.77%), Query Frame = 2
Query:  116 MAAPKLSRIPSIRERVEDTLSVHRNELVSLLSRYVAQGKGILQPHVLIDELDNIFGDDEGRQNLRDGPFSEVIKSAQEAIVLPPFVAIAVRPRPGVWEYVRVNVYELSVEQLSVSEYLHFKEELVDAAFNERFVLELDFEPFNATFPRPNRSSSIGNGVQFLNRHLSSSMFRNKDCLEPLLDFLRAHKYKGHLLMLND 709
            MA   L+R+ S+RER++ TL+ HRNE++  LSR  + GKGIL+PH L+ E ++I  +D+ + N  D  F EV+KS QEAIVLPP+VA+A+R RPGVWEYVRVNV  L VE+L+V E+L FKEELV+   N+ FVLELDFEPF A+FP+P  + SIGNGV+FLNRHLS+ MF +K+ + PLL+FLR H YKG  +MLND
Sbjct:    1 MAERVLTRVHSLRERLDATLAAHRNEILLFLSRIESHGKGILKPHQLLAEFESIHKEDKDKLN--DHAFEEVLKSTQEAIVLPPWVALAIRLRPGVWEYVRVNVNALIVEELTVPEFLQFKEELVNGTSNDNFVLELDFEPFTASFPKPTLTKSIGNGVEFLNRHLSAKMFHDKESMTPLLEFLRVHHYKGKTMMLND 196          
BLAST of FC932465 vs. ExPASy Swiss-Prot
Match: SUS1_TULGE (Sucrose synthase 1 OS=Tulipa gesneriana PE=2 SV=1)

HSP 1 Score: 237.269 bits (604), Expect = 6.904e-62
Identity = 117/198 (59.09%), Postives = 155/198 (78.28%), Query Frame = 2
Query:  116 MAAPKLSRIPSIRERVEDTLSVHRNELVSLLSRYVAQGKGILQPHVLIDELDNIFGDDEGRQNLRDGPFSEVIKSAQEAIVLPPFVAIAVRPRPGVWEYVRVNVYELSVEQLSVSEYLHFKEELVDAAFNERFVLELDFEPFNATFPRPNRSSSIGNGVQFLNRHLSSSMFRNKDCLEPLLDFLRAHKYKGHLLMLND 709
            M   +L+RI SI+ER+ D+LS H NEL++L SR++ QGKG+L+ H L+ E +++  + + R+ L+DG F + ++++QEAIV+PP+VA+A+RPRPGVWEYVRVNV EL+VE+ S  EYL FKE+LVD +    FVLE+DFEPFNA  PRP+ S SIGNGVQFLNRHLSS +F +K+ L PLL+FLR H YKG  LMLND
Sbjct:    1 MTERRLTRIHSIKERLGDSLSHHPNELLALFSRFIKQGKGMLERHQLLTEYESVIPEAD-REKLKDGVFEDTLRASQEAIVIPPWVALAIRPRPGVWEYVRVNVNELAVEECS--EYLKFKEDLVDRSSQSNFVLEMDFEPFNANVPRPSLSKSIGNGVQFLNRHLSSKLFHDKESLYPLLNFLREHNYKGTTLMLND 195          
BLAST of FC932465 vs. ExPASy Swiss-Prot
Match: SUSY_BETVU (Sucrose synthase (Fragment) OS=Beta vulgaris GN=SS1 PE=2 SV=1)

HSP 1 Score: 233.032 bits (593), Expect = 1.302e-60
Identity = 113/139 (81.29%), Postives = 126/139 (90.65%), Query Frame = 2
Query:  293 GRQNLRDGPFSEVIKSAQEAIVLPPFVAIAVRPRPGVWEYVRVNVYELSVEQLSVSEYLHFKEELVDAAFNERFVLELDFEPFNATFPRPNRSSSIGNGVQFLNRHLSSSMFRNKDCLEPLLDFLRAHKYKGHLLMLND 709
            G+Q L DGPFSEV++SAQEAIV+PPFVAIAVRPRPGVWEYVRVNV EL+VEQL+VSEYLHFKEELVD   ++ +VLELDFEPFN + PRP RSSSIGNGVQFLNRHLSSSMF NKDCLEPLLDFLR HK+KG ++MLND
Sbjct:    3 GKQILSDGPFSEVLRSAQEAIVVPPFVAIAVRPRPGVWEYVRVNVSELNVEQLTVSEYLHFKEELVDGKADDHYVLELDFEPFNESVPRPTRSSSIGNGVQFLNRHLSSSMFCNKDCLEPLLDFLRVHKHKGVVMMLND 141          
BLAST of FC932465 vs. ExPASy Swiss-Prot
Match: SUS1_DAUCA (Sucrose synthase isoform 1 OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 233.032 bits (593), Expect = 1.302e-60
Identity = 116/198 (58.59%), Postives = 148/198 (74.75%), Query Frame = 2
Query:  116 MAAPKLSRIPSIRERVEDTLSVHRNELVSLLSRYVAQGKGILQPHVLIDELDNIFGDDEGRQNLRDGPFSEVIKSAQEAIVLPPFVAIAVRPRPGVWEYVRVNVYELSVEQLSVSEYLHFKEELVDAAFNERFVLELDFEPFNATFPRPNRSSSIGNGVQFLNRHLSSSMFRNKDCLEPLLDFLRAHKYKGHLLMLND 709
            M  P L+R+ S+RER++ TL+ HRNE++  LSR  + GKGIL+PH L+ E + I  +D+ + +   G F+EVIKS QEAIV PP+VA+A+R RPGVWEYVRVNV+ L VE+LSV +YL FKEELV  + +  FVLELDF PF A+FPRP  + SIGNGV+FLNRHLS+ MF  KD + PLL+FLR H Y G  LMLN+
Sbjct:    1 MGEPVLTRVHSLRERMDSTLANHRNEILMFLSRIESHGKGILKPHQLLAEYEAISKEDKLKLDDGHGAFAEVIKSTQEAIVSPPWVALAIRLRPGVWEYVRVNVHHLVVEELSVPQYLQFKEELVIGSSDANFVLELDFAPFTASFPRPTLTKSIGNGVEFLNRHLSAKMFHGKDSMHPLLEFLRLHNYNGKTLMLNN 198          
The following BLAST results are available for this feature:
BLAST of FC932465 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
SUS3_ORYSJ1.486e-6461.14Sucrose synthase 3 OS=Oryza sativa subsp. japonica... [more]
SUS1_ORYSJ2.535e-6462.18Sucrose synthase 1 OS=Oryza sativa subsp. japonica... [more]
SUS1_SOLTU9.634e-6461.62Sucrose synthase OS=Solanum tuberosum PE=2 SV=1[more]
SUS1_HORVU3.661e-6360.20Sucrose synthase 1 OS=Hordeum vulgare GN=SS1 PE=1 ... [more]
SUSY_SOLLC6.245e-6361.62Sucrose synthase OS=Solanum lycopersicum PE=2 SV=1[more]
SUS2_HORVU1.065e-6260.62Sucrose synthase 2 OS=Hordeum vulgare GN=SS2 PE=1 ... [more]
SUS2_SOLTU5.287e-6259.09Sucrose synthase OS=Solanum tuberosum PE=3 SV=1[more]
SUS1_TULGE6.904e-6259.09Sucrose synthase 1 OS=Tulipa gesneriana PE=2 SV=1[more]
SUSY_BETVU1.302e-6081.29Sucrose synthase (Fragment) OS=Beta vulgaris GN=SS... [more]
SUS1_DAUCA1.302e-6058.59Sucrose synthase isoform 1 OS=Daucus carota PE=2 S... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34208H05EF PostHarveN Citrus clementina cDNA clone C34208H05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932465 ID=FC932465; Name=FC932465; organism=Citrus clementina; type=EST; length=750bp
GGGGTACTGCCACGACTTACACTTGTCACCTCCTTGTTTGCTTAACTTTT
TCTCTTTTTGATCATCACGGACTCTCTTTTGAAACAAGATTCGGTGATTC
ACGAGCAACAAAATCATGGCAGCCCCTAAGCTAAGTCGGATTCCGAGCAT
CAGAGAGCGCGTGGAGGACACTCTCTCTGTTCATCGTAATGAACTCGTTT
CTCTCCTCTCCAGGTATGTGGCTCAAGGCAAAGGGATTTTGCAACCGCAT
GTACTGATCGACGAGCTTGATAACATTTTTGGCGACGATGAAGGTCGGCA
GAACCTTCGGGATGGTCCGTTTAGCGAAGTTATCAAATCTGCTCAGGAAG
CGATAGTTCTGCCTCCGTTTGTGGCTATAGCAGTCCGTCCAAGACCAGGT
GTTTGGGAATATGTCCGTGTTAATGTCTATGAACTTAGCGTGGAGCAACT
AAGTGTTTCTGAATACCTTCACTTCAAAGAAGAACTTGTAGATGCGGCGT
TTAATGAAAGATTTGTGCTTGAGCTTGATTTTGAACCATTCAATGCAACT
TTTCCTCGCCCGAATCGGTCTTCATCAATTGGTAATGGGGTTCAGTTCCT
CAACCGTCACCTTTCTTCAAGTATGTTCCGCAACAAAGACTGTTTGGAGC
CCTTACTTGATTTCCTTCGAGCACACAAATATAAAGGGCATCTATTGATG
TTGAATGATCGGATTTCAAGCATTTCCCGGCTTCAGTCATCTCTGTCCAA
back to top