FC932468

Overview
NameFC932468
Unique NameFC932468
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length661
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932468 vs. ExPASy Swiss-Prot
Match: RL2_METBF (50S ribosomal protein L2P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 2.914e-31
Identity = 82/208 (39.42%), Postives = 115/208 (55.29%), Query Frame = 3
Query:   39 MGRVIRNQRKGRGS-IFTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPV 659
            MG+ I +Q +GRG+  + A +   KA  +   +D    +   +G V  + HD  R AP+AKV F    +        +A+EG+  G  I  G +A +  GNI+P+  +PEG  I N+E K  D G   R+SG Y TV+ H  E  +T V +PSG  K +    R +VGIVAGGGR D+P LKAG+  HK   +   +P+  GVAMNPV
Sbjct:    1 MGKRIISQNRGRGTPTYRAPSHKYKAELRHPRVD---ENTSIQGKVINLEHDPARSAPIAKVVFETGEE-----RLLLASEGIAVGSTIECGDDADVRPGNIVPIGKVPEGFFICNIESKPNDGGRFVRSSGVYATVVTH--ESNRTAVAMPSGNIKWLNPKCRAVVGIVAGGGRVDRPWLKAGKKYHKMKTRAAKYPRVSGVAMNPV 198          
BLAST of FC932468 vs. ExPASy Swiss-Prot
Match: RL8_ENCCU (60S ribosomal protein L8 OS=Encephalitozoon cuniculi GN=RPL8 PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 3.805e-31
Identity = 75/208 (36.06%), Postives = 114/208 (54.81%), Query Frame = 3
Query:   39 MGRVIRNQRKGRGSIFTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFI-ANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPV 659
            MG++ R  R+ +        +  + P     L +        G V +I+H+  RGAP+A + F+         +  + A+EGMYTGQ I  G +A + +GNI  + ++PEG  + +VE   GD G     +G+Y  V+ H  E  +T +K+PSG K  + +  R +VG+VAGGG  DKPLLKA  A +K   + + +P+ RGVAMNPV
Sbjct:    1 MGKITRRTREAK--------KKQRQPIVKVCLSYPIIPQVEEGEVIDIVHERSRGAPVAIISFKED-------DCMVPASEGMYTGQKILIGDDAPIDIGNITKIKNVPEGMAVNSVESVYGDGGTFAMVNGSYSLVVNHRKETNETVIKIPSGKKLTVSSECRCIVGVVAGGGIHDKPLLKASVAHYKAKARGHVFPRVRGVAMNPV 193          
BLAST of FC932468 vs. ExPASy Swiss-Prot
Match: RL2_HALLT (50S ribosomal protein L2P OS=Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 4.970e-31
Identity = 81/208 (38.94%), Postives = 111/208 (53.37%), Query Frame = 3
Query:   39 MGRVIRNQRKGRGS-IFTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPV 659
            MGR I+ QR+GRG   F A +   KA    + L+  +      G +  I HD  R APLA+++F    +        +A EG+  G  I  G +A +  GN LPLA +PEG  + NVE   GD G   R SG   T++ H+ +     V+LPSG  K +    R  +G+VAGGGRT+KP +KAG   HK   +   +P+ RGVAMN V
Sbjct:    1 MGRRIQGQRRGRGGPTFRAPSHRYKAELSHKKLEDVDT---ITGEIVGIEHDPARSAPLAEIEFEDDDR-----RLVLAPEGVRVGDTIQVGVSAEIKPGNTLPLAEIPEGVPVCNVESNRGDGGKFARASGVSATLLTHDRDVAV--VQLPSGEVKRLDPQCRATIGVVAGGGRTEKPFVKAGNKYHKMKARGTKYPRVRGVAMNAV 198          
BLAST of FC932468 vs. ExPASy Swiss-Prot
Match: RL2_SULIN (50S ribosomal protein L2P OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 6.491e-31
Identity = 79/209 (37.80%), Postives = 117/209 (55.98%), Query Frame = 3
Query:   39 MGRVIRNQRKGRGSIFTANTRLNKAPAQFRT--LDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPV 659
            MG+ +  QR G+GS         ++P+  R   + +    G+  G V +I+H+ G   P+A ++  +  KF  +T+   A +G+   Q I  GK + +  GN++ +   PEGT++ NVEE  GD G   R++G+Y  V+G + +  K  +KLPS   K + N AR  VG+VAGGG  +KPLLKAG    K+ VK   WP  RGVAMN V
Sbjct:    1 MGKNLLQQRAGKGS------PTFRSPSWLRIGKVRYPNIFGHLVGKVIDIVHNPGMNTPVAIIKLENGTKF--LTQ---AIQGLVINQKIEFGKGSPIANGNVIEIGDAPEGTIVCNVEENFGDGGKYARSAGSYAVVVGKSGD--KVLIKLPSDKIKAVSNKARATVGVVAGGGVVEKPLLKAGANYWKYKVKAKKWPIVRGVAMNVV 196          
BLAST of FC932468 vs. ExPASy Swiss-Prot
Match: RL2_HALWD (50S ribosomal protein L2P OS=Haloquadratum walsbyi (strain DSM 16790) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 6.491e-31
Identity = 78/208 (37.50%), Postives = 113/208 (54.33%), Query Frame = 3
Query:   39 MGRVIRNQRKGRG-SIFTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPV 659
            MGR I+ QR+GRG S F A +   KA    +    +E+     G + +I HD  R AP+A V+F    +        +A EG+  G+ +  G +A +  GN LPL  +PEG  + NVE + GD G   R SG    ++ H+ +     ++LPSG  K +    +  +G+VAGGGRT+KP +KAG+  HK   +   WP+ RGVAMN V
Sbjct:    1 MGRRIQGQRRGRGTSTFRAPSHRYKAELSHKQ---SESDDTITGTIVDIEHDPARSAPVAAVEFDDGDR-----RLVLAPEGIRVGETMQIGVSAEIKPGNTLPLREIPEGVPVCNVESQVGDGGKFARASGTSAQLMTHDRD--VVVIELPSGETKRLSPACQATIGVVAGGGRTEKPFVKAGKKHHKMKARGIKWPRVRGVAMNAV 198          
BLAST of FC932468 vs. ExPASy Swiss-Prot
Match: RL2_METAC (50S ribosomal protein L2P OS=Methanosarcina acetivorans GN=rpl2p PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.107e-30
Identity = 81/207 (39.13%), Postives = 115/207 (55.56%), Query Frame = 3
Query:   39 MGRVIRNQRKGRGS-IFTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNP 656
            MG+ + +Q +GRG+  + A +   KA  +   +D    +   RG V  I HD  R AP+AKV F +  +  ++     A+EG+  G  I  G +A +  GNI+P+ ++PEG  I NVE K  D G   R+SG Y TV+ H  E  +T V +PSG  K +    R +VGIVAG GR D+P LKAG+  HK   +   +P+   VAMNP
Sbjct:    1 MGKRLISQNRGRGTPTYRAPSHKYKADLRHPRVD---ENSSLRGEVVGIEHDPARSAPIAKVAFENGEELFLL-----ASEGIAVGNIIECGDDAEVKPGNIVPIGNVPEGFFICNVESKPNDGGKFVRSSGVYATVVTH--EATRTAVSMPSGNIKWLNPKCRAVVGIVAGSGRVDRPWLKAGKKYHKMKTRAAKYPRVSAVAMNP 197          
BLAST of FC932468 vs. ExPASy Swiss-Prot
Match: RL2_CALMQ (50S ribosomal protein L2P OS=Caldivirga maquilingensis (strain DSMZ 13496 / IC-167) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.107e-30
Identity = 77/206 (37.38%), Postives = 114/206 (55.34%), Query Frame = 3
Query:   39 MGRVIRNQRKGRG-SIFTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMN 653
            MG+ I  QR GRG S F + +    AP ++      +     RG++KE++H  G  AP   V   +  +  +      A EG+Y G+ I  G +A +  GN++P+  +PEGT++ N+E++ GD G   R+SG Y  V+ H   D  T V+LPSG    + + AR  +GIVAGGGR +KP +KAG   H+   K   +PK RG AM+
Sbjct:    1 MGKKILVQRAGRGGSQFRSPSWRRIAPLRYVQFSEEQLKTTIRGIIKELVHVTGLNAPAMHVVLENGEEMYLP-----AVEGVYVGKIIEFGPDAKVEPGNVMPIGKIPEGTMVCNIEKRVGDGGKYARSSGTYGVVMIH--RDSTTLVQLPSGRMIEVDSRARATIGIVAGGGRIEKPFVKAGNKYHRARTKAWKYPKVRGKAMS 199          
BLAST of FC932468 vs. ExPASy Swiss-Prot
Match: RL2_ARCFU (50S ribosomal protein L2P OS=Archaeoglobus fulgidus GN=rpl2p PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.446e-30
Identity = 84/209 (40.19%), Postives = 116/209 (55.50%), Query Frame = 3
Query:   39 MGRVIRNQRKGRGS-IFTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFI-ANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPV 659
            MG+ I +Q +G+G+  + A +   K  A+   L F +        V +I HD+ R  P+A V      K    +ET+I A EG+ TG  +YAG N  +  GNI  L ++PEGT + N+E + GD G   R SG +  V+    E  K  V++PSG +K      R M+G+VAGGGRTDKP +KAG+  HK   K   WP+ RGVAMN V
Sbjct:    1 MGKRIISQNRGKGTPTYRAPSHRYKTDAKL--LRFKDE--VVAAKVIDIQHDSARNGPVALV------KLPDGSETYILAVEGLGTGDVVYAGDNVEIASGNITYLKNIPEGTPVCNIEAQPGDGGKFIRASGTFGFVVSR--EADKVLVQMPSGKQKWFHPNCRAMIGVVAGGGRTDKPFVKAGKKYHKMKSKAAKWPRVRGVAMNAV 197          
BLAST of FC932468 vs. ExPASy Swiss-Prot
Match: RL2_SULAC (50S ribosomal protein L2P OS=Sulfolobus acidocaldarius GN=rpl2p PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 7.176e-30
Identity = 80/208 (38.46%), Postives = 115/208 (55.29%), Query Frame = 3
Query:   39 MGRVIRNQRKGRGSI-FTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPV 659
            MG+ +  QR GRG I F + +     PA++  ++     G  +G + +I+H+ G  AP+ KV+  +  +F +      A +G+  GQ I  GKNA ++ GNI+ +  +PEGTVI NVE+  GD G   R +G+Y  + G      K  +KL S     +   AR  VGI+AGGG  +KPLLKAG    K+ V+   WP  RGVAMN V
Sbjct:    1 MGKKLLQQRAGRGGINFRSPSWRRVGPARYPNIE-----GDHKGKIIDILHNPGVTAPVVKVKLDNGLQFYIP-----AVQGVAVGQEISIGKNATISNGNIVEVGQLPEGTVICNVEKLKGDGGKFARAAGSYAVISGK--AGNKVLIKLSSEKIVEVSQNARATVGIIAGGGFVEKPLLKAGNNYWKYRVRAVKWPVVRGVAMNAV 196          
BLAST of FC932468 vs. ExPASy Swiss-Prot
Match: RL2_METS5 (50S ribosomal protein L2P OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 9.373e-30
Identity = 83/209 (39.71%), Postives = 116/209 (55.50%), Query Frame = 3
Query:   39 MGRVIRNQRKGRGSIFTANTR-LNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFI-ANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPV 659
            MG+ +  QR GRG+I   N   L     ++ T+      G+    V +I+H+ G   P+AKV+     +F      FI A +G+ +GQ I  G+ +  ++GNI+P   +PEG  ++NVE   GD G   RT+G+Y  V+G +  +GK  ++LPSG  K I   A   VG VAGGG  +KPLLKAG    K+ VK   WP  RGVAMN V
Sbjct:    1 MGKKLLQQRAGRGNINFRNPGWLRVGKVRYPTIT-----GHHIAKVVDILHNPGMTEPVAKVKLDTGIQF------FIPAVQGLISGQKIEVGEGSPASLGNIVPAKDLPEGVYVSNVELHRGDGGRYARTAGSYAIVVGKS--EGKVILRLPSGKIKEIDENALVTVGTVAGGGVLEKPLLKAGNNYWKYKVKATKWPDVRGVAMNVV 196          
The following BLAST results are available for this feature:
BLAST of FC932468 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL2_METBF2.914e-3139.4250S ribosomal protein L2P OS=Methanosarcina barker... [more]
RL8_ENCCU3.805e-3136.0660S ribosomal protein L8 OS=Encephalitozoon cunicu... [more]
RL2_HALLT4.970e-3138.9450S ribosomal protein L2P OS=Halorubrum lacusprofu... [more]
RL2_SULIN6.491e-3137.8050S ribosomal protein L2P OS=Sulfolobus islandicus... [more]
RL2_HALWD6.491e-3137.5050S ribosomal protein L2P OS=Haloquadratum walsbyi... [more]
RL2_METAC1.107e-3039.1350S ribosomal protein L2P OS=Methanosarcina acetiv... [more]
RL2_CALMQ1.107e-3037.3850S ribosomal protein L2P OS=Caldivirga maquilinge... [more]
RL2_ARCFU1.446e-3040.1950S ribosomal protein L2P OS=Archaeoglobus fulgidu... [more]
RL2_SULAC7.176e-3038.4650S ribosomal protein L2P OS=Sulfolobus acidocalda... [more]
RL2_METS59.373e-3039.7150S ribosomal protein L2P OS=Metallosphaera sedula... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34208H08EF PostHarveN Citrus clementina cDNA clone C34208H08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932468 ID=FC932468; Name=FC932468; organism=Citrus clementina; type=EST; length=661bp
GGTCAACGACAAGCCTATATCACTTCGAGACAGTCGCCATGGGTCGTGTC
ATCCGCAACCAGAGGAAGGGTCGTGGCTCCATTTTCACGGCCAACACCCG
CCTGAACAAGGCCCCTGCCCAATTCCGGACCCTCGACTTCGCTGAGGCTC
ACGGTTACACCCGTGGTGTCGTCAAGGAGATCATCCACGATGCCGGCCGT
GGTGCTCCCCTCGCCAAGGTCCAGTTCCGCCACCCCTACAAGTTCAAGAT
GATCACCGAGACTTTCATCGCCAACGAGGGCATGTACACCGGCCAGTTCA
TCTACGCCGGTAAGAACGCTGCCCTGACCGTCGGCAACATTCTTCCTCTC
GCCTCCATGCCCGAGGGTACCGTCATCACCAACGTCGAGGAGAAGGCTGG
TGACCGTGGTGCGCTTGGCCGTACCTCCGGTAACTACGTTACTGTTATTG
GCCACAACCCCGAGGATGGCAAGACCCGTGTCAAGCTCCCCTCCGGTGCC
AAGAAGGTCATCAAGAACACCGCTCGCGGTATGGTTGGTATCGTTGCCGG
TGGTGGCCGTACCGACAAGCCTTTGCTCAAGGCTGGTCGTGCCAAGCACA
AGTTCGCCGTCAAGCGCAACTCTTGGCCCAAGACTCGTGGTGTTGCCATG
AACCCCGTCGA
back to top