FC932468
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC932468 vs. ExPASy Swiss-Prot
Match: RL2_METBF (50S ribosomal protein L2P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rpl2p PE=3 SV=1) HSP 1 Score: 135.191 bits (339), Expect = 2.914e-31 Identity = 82/208 (39.42%), Postives = 115/208 (55.29%), Query Frame = 3 Query: 39 MGRVIRNQRKGRGS-IFTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPV 659 MG+ I +Q +GRG+ + A + KA + +D + +G V + HD R AP+AKV F + +A+EG+ G I G +A + GNI+P+ +PEG I N+E K D G R+SG Y TV+ H E +T V +PSG K + R +VGIVAGGGR D+P LKAG+ HK + +P+ GVAMNPV Sbjct: 1 MGKRIISQNRGRGTPTYRAPSHKYKAELRHPRVD---ENTSIQGKVINLEHDPARSAPIAKVVFETGEE-----RLLLASEGIAVGSTIECGDDADVRPGNIVPIGKVPEGFFICNIESKPNDGGRFVRSSGVYATVVTH--ESNRTAVAMPSGNIKWLNPKCRAVVGIVAGGGRVDRPWLKAGKKYHKMKTRAAKYPRVSGVAMNPV 198
BLAST of FC932468 vs. ExPASy Swiss-Prot
Match: RL8_ENCCU (60S ribosomal protein L8 OS=Encephalitozoon cuniculi GN=RPL8 PE=3 SV=1) HSP 1 Score: 134.806 bits (338), Expect = 3.805e-31 Identity = 75/208 (36.06%), Postives = 114/208 (54.81%), Query Frame = 3 Query: 39 MGRVIRNQRKGRGSIFTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFI-ANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPV 659 MG++ R R+ + + + P L + G V +I+H+ RGAP+A + F+ + + A+EGMYTGQ I G +A + +GNI + ++PEG + +VE GD G +G+Y V+ H E +T +K+PSG K + + R +VG+VAGGG DKPLLKA A +K + + +P+ RGVAMNPV Sbjct: 1 MGKITRRTREAK--------KKQRQPIVKVCLSYPIIPQVEEGEVIDIVHERSRGAPVAIISFKED-------DCMVPASEGMYTGQKILIGDDAPIDIGNITKIKNVPEGMAVNSVESVYGDGGTFAMVNGSYSLVVNHRKETNETVIKIPSGKKLTVSSECRCIVGVVAGGGIHDKPLLKASVAHYKAKARGHVFPRVRGVAMNPV 193
BLAST of FC932468 vs. ExPASy Swiss-Prot
Match: RL2_HALLT (50S ribosomal protein L2P OS=Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=rpl2p PE=3 SV=1) HSP 1 Score: 134.42 bits (337), Expect = 4.970e-31 Identity = 81/208 (38.94%), Postives = 111/208 (53.37%), Query Frame = 3 Query: 39 MGRVIRNQRKGRGS-IFTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPV 659 MGR I+ QR+GRG F A + KA + L+ + G + I HD R APLA+++F + +A EG+ G I G +A + GN LPLA +PEG + NVE GD G R SG T++ H+ + V+LPSG K + R +G+VAGGGRT+KP +KAG HK + +P+ RGVAMN V Sbjct: 1 MGRRIQGQRRGRGGPTFRAPSHRYKAELSHKKLEDVDT---ITGEIVGIEHDPARSAPLAEIEFEDDDR-----RLVLAPEGVRVGDTIQVGVSAEIKPGNTLPLAEIPEGVPVCNVESNRGDGGKFARASGVSATLLTHDRDVAV--VQLPSGEVKRLDPQCRATIGVVAGGGRTEKPFVKAGNKYHKMKARGTKYPRVRGVAMNAV 198
BLAST of FC932468 vs. ExPASy Swiss-Prot
Match: RL2_SULIN (50S ribosomal protein L2P OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=rpl2p PE=3 SV=1) HSP 1 Score: 134.035 bits (336), Expect = 6.491e-31 Identity = 79/209 (37.80%), Postives = 117/209 (55.98%), Query Frame = 3 Query: 39 MGRVIRNQRKGRGSIFTANTRLNKAPAQFRT--LDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPV 659 MG+ + QR G+GS ++P+ R + + G+ G V +I+H+ G P+A ++ + KF +T+ A +G+ Q I GK + + GN++ + PEGT++ NVEE GD G R++G+Y V+G + + K +KLPS K + N AR VG+VAGGG +KPLLKAG K+ VK WP RGVAMN V Sbjct: 1 MGKNLLQQRAGKGS------PTFRSPSWLRIGKVRYPNIFGHLVGKVIDIVHNPGMNTPVAIIKLENGTKF--LTQ---AIQGLVINQKIEFGKGSPIANGNVIEIGDAPEGTIVCNVEENFGDGGKYARSAGSYAVVVGKSGD--KVLIKLPSDKIKAVSNKARATVGVVAGGGVVEKPLLKAGANYWKYKVKAKKWPIVRGVAMNVV 196
BLAST of FC932468 vs. ExPASy Swiss-Prot
Match: RL2_HALWD (50S ribosomal protein L2P OS=Haloquadratum walsbyi (strain DSM 16790) GN=rpl2p PE=3 SV=1) HSP 1 Score: 134.035 bits (336), Expect = 6.491e-31 Identity = 78/208 (37.50%), Postives = 113/208 (54.33%), Query Frame = 3 Query: 39 MGRVIRNQRKGRG-SIFTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPV 659 MGR I+ QR+GRG S F A + KA + +E+ G + +I HD R AP+A V+F + +A EG+ G+ + G +A + GN LPL +PEG + NVE + GD G R SG ++ H+ + ++LPSG K + + +G+VAGGGRT+KP +KAG+ HK + WP+ RGVAMN V Sbjct: 1 MGRRIQGQRRGRGTSTFRAPSHRYKAELSHKQ---SESDDTITGTIVDIEHDPARSAPVAAVEFDDGDR-----RLVLAPEGIRVGETMQIGVSAEIKPGNTLPLREIPEGVPVCNVESQVGDGGKFARASGTSAQLMTHDRD--VVVIELPSGETKRLSPACQATIGVVAGGGRTEKPFVKAGKKHHKMKARGIKWPRVRGVAMNAV 198
BLAST of FC932468 vs. ExPASy Swiss-Prot
Match: RL2_METAC (50S ribosomal protein L2P OS=Methanosarcina acetivorans GN=rpl2p PE=3 SV=1) HSP 1 Score: 133.265 bits (334), Expect = 1.107e-30 Identity = 81/207 (39.13%), Postives = 115/207 (55.56%), Query Frame = 3 Query: 39 MGRVIRNQRKGRGS-IFTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNP 656 MG+ + +Q +GRG+ + A + KA + +D + RG V I HD R AP+AKV F + + ++ A+EG+ G I G +A + GNI+P+ ++PEG I NVE K D G R+SG Y TV+ H E +T V +PSG K + R +VGIVAG GR D+P LKAG+ HK + +P+ VAMNP Sbjct: 1 MGKRLISQNRGRGTPTYRAPSHKYKADLRHPRVD---ENSSLRGEVVGIEHDPARSAPIAKVAFENGEELFLL-----ASEGIAVGNIIECGDDAEVKPGNIVPIGNVPEGFFICNVESKPNDGGKFVRSSGVYATVVTH--EATRTAVSMPSGNIKWLNPKCRAVVGIVAGSGRVDRPWLKAGKKYHKMKTRAAKYPRVSAVAMNP 197
BLAST of FC932468 vs. ExPASy Swiss-Prot
Match: RL2_CALMQ (50S ribosomal protein L2P OS=Caldivirga maquilingensis (strain DSMZ 13496 / IC-167) GN=rpl2p PE=3 SV=1) HSP 1 Score: 133.265 bits (334), Expect = 1.107e-30 Identity = 77/206 (37.38%), Postives = 114/206 (55.34%), Query Frame = 3 Query: 39 MGRVIRNQRKGRG-SIFTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMN 653 MG+ I QR GRG S F + + AP ++ + RG++KE++H G AP V + + + A EG+Y G+ I G +A + GN++P+ +PEGT++ N+E++ GD G R+SG Y V+ H D T V+LPSG + + AR +GIVAGGGR +KP +KAG H+ K +PK RG AM+ Sbjct: 1 MGKKILVQRAGRGGSQFRSPSWRRIAPLRYVQFSEEQLKTTIRGIIKELVHVTGLNAPAMHVVLENGEEMYLP-----AVEGVYVGKIIEFGPDAKVEPGNVMPIGKIPEGTMVCNIEKRVGDGGKYARSSGTYGVVMIH--RDSTTLVQLPSGRMIEVDSRARATIGIVAGGGRIEKPFVKAGNKYHRARTKAWKYPKVRGKAMS 199
BLAST of FC932468 vs. ExPASy Swiss-Prot
Match: RL2_ARCFU (50S ribosomal protein L2P OS=Archaeoglobus fulgidus GN=rpl2p PE=3 SV=1) HSP 1 Score: 132.88 bits (333), Expect = 1.446e-30 Identity = 84/209 (40.19%), Postives = 116/209 (55.50%), Query Frame = 3 Query: 39 MGRVIRNQRKGRGS-IFTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFI-ANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPV 659 MG+ I +Q +G+G+ + A + K A+ L F + V +I HD+ R P+A V K +ET+I A EG+ TG +YAG N + GNI L ++PEGT + N+E + GD G R SG + V+ E K V++PSG +K R M+G+VAGGGRTDKP +KAG+ HK K WP+ RGVAMN V Sbjct: 1 MGKRIISQNRGKGTPTYRAPSHRYKTDAKL--LRFKDE--VVAAKVIDIQHDSARNGPVALV------KLPDGSETYILAVEGLGTGDVVYAGDNVEIASGNITYLKNIPEGTPVCNIEAQPGDGGKFIRASGTFGFVVSR--EADKVLVQMPSGKQKWFHPNCRAMIGVVAGGGRTDKPFVKAGKKYHKMKSKAAKWPRVRGVAMNAV 197
BLAST of FC932468 vs. ExPASy Swiss-Prot
Match: RL2_SULAC (50S ribosomal protein L2P OS=Sulfolobus acidocaldarius GN=rpl2p PE=3 SV=1) HSP 1 Score: 130.568 bits (327), Expect = 7.176e-30 Identity = 80/208 (38.46%), Postives = 115/208 (55.29%), Query Frame = 3 Query: 39 MGRVIRNQRKGRGSI-FTANTRLNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFIANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPV 659 MG+ + QR GRG I F + + PA++ ++ G +G + +I+H+ G AP+ KV+ + +F + A +G+ GQ I GKNA ++ GNI+ + +PEGTVI NVE+ GD G R +G+Y + G K +KL S + AR VGI+AGGG +KPLLKAG K+ V+ WP RGVAMN V Sbjct: 1 MGKKLLQQRAGRGGINFRSPSWRRVGPARYPNIE-----GDHKGKIIDILHNPGVTAPVVKVKLDNGLQFYIP-----AVQGVAVGQEISIGKNATISNGNIVEVGQLPEGTVICNVEKLKGDGGKFARAAGSYAVISGK--AGNKVLIKLSSEKIVEVSQNARATVGIIAGGGFVEKPLLKAGNNYWKYRVRAVKWPVVRGVAMNAV 196
BLAST of FC932468 vs. ExPASy Swiss-Prot
Match: RL2_METS5 (50S ribosomal protein L2P OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=rpl2p PE=3 SV=1) HSP 1 Score: 130.183 bits (326), Expect = 9.373e-30 Identity = 83/209 (39.71%), Postives = 116/209 (55.50%), Query Frame = 3 Query: 39 MGRVIRNQRKGRGSIFTANTR-LNKAPAQFRTLDFAEAHGYTRGVVKEIIHDAGRGAPLAKVQFRHPYKFKMITETFI-ANEGMYTGQFIYAGKNAALTVGNILPLASMPEGTVITNVEEKAGDRGALGRTSGNYVTVIGHNPEDGKTRVKLPSGAKKVIKNTARGMVGIVAGGGRTDKPLLKAGRAKHKFAVKRNSWPKTRGVAMNPV 659 MG+ + QR GRG+I N L ++ T+ G+ V +I+H+ G P+AKV+ +F FI A +G+ +GQ I G+ + ++GNI+P +PEG ++NVE GD G RT+G+Y V+G + +GK ++LPSG K I A VG VAGGG +KPLLKAG K+ VK WP RGVAMN V Sbjct: 1 MGKKLLQQRAGRGNINFRNPGWLRVGKVRYPTIT-----GHHIAKVVDILHNPGMTEPVAKVKLDTGIQF------FIPAVQGLISGQKIEVGEGSPASLGNIVPAKDLPEGVYVSNVELHRGDGGRYARTAGSYAIVVGKS--EGKVILRLPSGKIKEIDENALVTVGTVAGGGVLEKPLLKAGNNYWKYKVKATKWPDVRGVAMNVV 196 The following BLAST results are available for this feature:
BLAST of FC932468 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >FC932468 ID=FC932468; Name=FC932468; organism=Citrus clementina; type=EST; length=661bpback to top |