FC932469

Overview
NameFC932469
Unique NameFC932469
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length384
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932469 vs. ExPASy Swiss-Prot
Match: UBIQ_DICDI (Ubiquitin OS=Dictyostelium discoideum GN=ubqA PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.118e-22
Identity = 51/55 (92.73%), Postives = 53/55 (96.36%), Query Frame = 1
Query:    1 EVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 165
            EVE SD I+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct:   16 EVEGSDNIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 70          
BLAST of FC932469 vs. ExPASy Swiss-Prot
Match: UBIQ_PHYIN (Ubiquitin OS=Phytophthora infestans PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 3.253e-22
Identity = 50/55 (90.91%), Postives = 53/55 (96.36%), Query Frame = 1
Query:    1 EVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 165
            +VE SD+IDNVK KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLV
Sbjct:   16 DVEPSDSIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 70          
BLAST of FC932469 vs. ExPASy Swiss-Prot
Match: UBIQ_LEITA (Ubiquitin OS=Leishmania tarentolae GN=UB-EP52 PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 7.247e-22
Identity = 50/55 (90.91%), Postives = 53/55 (96.36%), Query Frame = 1
Query:    1 EVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 165
            EVE SDTI+NVKAKIQDKEGIPPDQQRLIFA KQLE+GRTL+DYNIQKESTLHLV
Sbjct:   16 EVEPSDTIENVKAKIQDKEGIPPDQQRLIFADKQLEEGRTLSDYNIQKESTLHLV 70          
BLAST of FC932469 vs. ExPASy Swiss-Prot
Match: UBIL_NPVOP (Ubiquitin-like protein OS=Orgyia pseudotsugata multicapsid polyhedrosis virus GN=V-UBI PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.151e-17
Identity = 41/55 (74.55%), Postives = 46/55 (83.64%), Query Frame = 1
Query:    1 EVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 165
            E E  DT+  VK KI DKEG+P DQQRLI+AGKQLED +TLADYNIQKESTLH+V
Sbjct:   16 ETEPGDTVGQVKQKIADKEGVPVDQQRLIYAGKQLEDAQTLADYNIQKESTLHMV 70          
BLAST of FC932469 vs. ExPASy Swiss-Prot
Match: UBIL_NPVAC (Ubiquitin-like protein OS=Autographa californica nuclear polyhedrosis virus GN=V-UBI PE=3 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 9.167e-17
Identity = 39/55 (70.91%), Postives = 48/55 (87.27%), Query Frame = 1
Query:    1 EVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 165
            E E ++T+ ++K KI DKEG+P DQQRLIFAGKQLED +T+ADYNIQKESTLH+V
Sbjct:   16 ETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYNIQKESTLHMV 70          
BLAST of FC932469 vs. ExPASy Swiss-Prot
Match: RUB1_DESAN (NEDD8-like protein RUB1 OS=Deschampsia antarctica GN=RUB1 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.239e-13
Identity = 34/55 (61.82%), Postives = 44/55 (80.00%), Query Frame = 1
Query:    1 EVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 165
            ++E +DTID VK ++++KEGIPP QQRLI+AGKQL D +T  DYNI+  S LHLV
Sbjct:   16 DIEPTDTIDRVKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLV 70          
BLAST of FC932469 vs. ExPASy Swiss-Prot
Match: RUB2_ORYSJ (NEDD8-like protein RUB2 OS=Oryza sativa subsp. japonica GN=RUB2 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.618e-13
Identity = 33/55 (60.00%), Postives = 44/55 (80.00%), Query Frame = 1
Query:    1 EVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 165
            ++E +DTID +K ++++KEGIPP QQRLI+AGKQL D +T  DYNI+  S LHLV
Sbjct:   16 DIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLV 70          
BLAST of FC932469 vs. ExPASy Swiss-Prot
Match: RUB1_ORYSJ (NEDD8-like protein RUB1 OS=Oryza sativa subsp. japonica GN=RUB1 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.618e-13
Identity = 33/55 (60.00%), Postives = 44/55 (80.00%), Query Frame = 1
Query:    1 EVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 165
            ++E +DTID +K ++++KEGIPP QQRLI+AGKQL D +T  DYNI+  S LHLV
Sbjct:   16 DIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLV 70          
BLAST of FC932469 vs. ExPASy Swiss-Prot
Match: RUB1_ARATH (NEDD8-like protein RUB1 OS=Arabidopsis thaliana GN=RUB1 PE=1 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 1.618e-13
Identity = 33/55 (60.00%), Postives = 44/55 (80.00%), Query Frame = 1
Query:    1 EVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 165
            ++E +DTID +K ++++KEGIPP QQRLI+AGKQL D +T  DYNI+  S LHLV
Sbjct:   16 DIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLV 70          
BLAST of FC932469 vs. ExPASy Swiss-Prot
Match: NEDD8_DROME (NEDD8 OS=Drosophila melanogaster GN=Nedd8 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.708e-13
Identity = 30/55 (54.55%), Postives = 43/55 (78.18%), Query Frame = 1
Query:    1 EVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 165
            ++E +D +D +K ++++KEGIPP QQRLIF+GKQ+ D +T ADY +Q  S LHLV
Sbjct:   16 DIEPTDKVDRIKERVEEKEGIPPQQQRLIFSGKQMNDDKTAADYKVQGGSVLHLV 70          
The following BLAST results are available for this feature:
BLAST of FC932469 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 89
Match NameE-valueIdentityDescription
UBIQ_DICDI1.118e-2292.73Ubiquitin OS=Dictyostelium discoideum GN=ubqA PE=1... [more]
UBIQ_PHYIN3.253e-2290.91Ubiquitin OS=Phytophthora infestans PE=1 SV=1[more]
UBIQ_LEITA7.247e-2290.91Ubiquitin OS=Leishmania tarentolae GN=UB-EP52 PE=3... [more]
UBIL_NPVOP3.151e-1774.55Ubiquitin-like protein OS=Orgyia pseudotsugata mul... [more]
UBIL_NPVAC9.167e-1770.91Ubiquitin-like protein OS=Autographa californica n... [more]
RUB1_DESAN1.239e-1361.82NEDD8-like protein RUB1 OS=Deschampsia antarctica ... [more]
RUB2_ORYSJ1.618e-1360.00NEDD8-like protein RUB2 OS=Oryza sativa subsp. jap... [more]
RUB1_ORYSJ1.618e-1360.00NEDD8-like protein RUB1 OS=Oryza sativa subsp. jap... [more]
RUB1_ARATH1.618e-1360.00NEDD8-like protein RUB1 OS=Arabidopsis thaliana GN... [more]
NEDD8_DROME4.708e-1354.55NEDD8 OS=Drosophila melanogaster GN=Nedd8 PE=1 SV=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34208H09EF PostHarveN Citrus clementina cDNA clone C34208H09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932469 ID=FC932469; Name=FC932469; organism=Citrus clementina; type=EST; length=384bp
GAGGTAGAGAGTTCTGATACCATTGACAATGTCAAAGCCAAGATTCAGGA
CAAGGAAGGGATCCCACCTGATCAGCAGAGGCTCATCTTCGCTGGGAAGC
AGCTTGAGGACGGGCGTACTCTGGCTGATTACAACATTCAGAAGGAGTCC
ACCCTCCATCTCGTCCTCCGTCTCCGAGGTGGTGGTTTCTGAGGGGGATT
CACTGCGCCCCGTGTCAATGTCTTTTCTGTTCAAGATGGTCCTTATGTTG
TCTTTGTCTTCTTGAAGAAGACTAGTTATAATTGATAATATGGTCTTTTG
TTTTTATATGTTGTTGTTTGTTGAACGAGTTATGCTTTTGAATAAAAAAC
TCTAGTGCAAAAAAAAAAAAAAAAAAAAAAAAAA
back to top