FC932475

Overview
NameFC932475
Unique NameFC932475
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length702
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932475 vs. ExPASy Swiss-Prot
Match: PGK_NOSP7 (Phosphoglycerate kinase OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=pgk PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 5.089e-32
Identity = 71/116 (61.21%), Postives = 83/116 (71.55%), Query Frame = 3
Query:  354 MAKKSVGELSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRPKGVTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPESGVLL 701
            M+KKS+  LS AD+ GK+  VR D NVP+DD   ITDDTRIRAA+PTI+ L Q GAKVIL+SH GRPKGV  K  L P+  RLSELLG +V+K DD IG EV   VA+L    VLL
Sbjct:    1 MSKKSLASLSSADISGKRALVRVDFNVPVDDQGKITDDTRIRAALPTIQDLTQKGAKVILASHFGRPKGVDDKLRLTPVAKRLSELLGQEVIKTDDSIGDEVAAKVAALQNGQVLL 116          
BLAST of FC932475 vs. ExPASy Swiss-Prot
Match: PGK_SYNY3 (Phosphoglycerate kinase OS=Synechocystis sp. (strain PCC 6803) GN=pgk PE=3 SV=2)

HSP 1 Score: 134.806 bits (338), Expect = 4.308e-31
Identity = 73/117 (62.39%), Postives = 84/117 (71.79%), Query Frame = 3
Query:  354 MAKKSVGELSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRPKG-VTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPESGVLL 701
            ++K+S+  L+ ADL GK+VFVR D NVPLD N +ITDDTRIRAA+PTIK L+  GAKVIL SH GRPKG V     L P+  RL ELLG  VVK DDCIG EV   +ASLP  GV L
Sbjct:    2 LSKQSIANLTEADLAGKRVFVRVDFNVPLD-NGSITDDTRIRAALPTIKDLLSKGAKVILGSHFGRPKGKVVDSMRLTPVGDRLGELLGQPVVKCDDCIGAEVTAKIASLPNGGVAL 117          
BLAST of FC932475 vs. ExPASy Swiss-Prot
Match: PGK_CYAP4 (Phosphoglycerate kinase OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=pgk PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 4.308e-31
Identity = 74/122 (60.66%), Postives = 84/122 (68.85%), Query Frame = 3
Query:  354 MAKKSVGELSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRPKG------VTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPESGVLL 701
            M+KK+V  LS ADL GK+V VR D NVPLDD   ITDDTRIRAA+PTI+ L   GAKVILSSH GRPKG      V  KF L P+  RLSELLG  V K +DCIG EV+  VA++    VLL
Sbjct:    1 MSKKTVANLSAADLAGKRVLVRVDFNVPLDDQGKITDDTRIRAALPTIQDLTSKGAKVILSSHFGRPKGETFAERVKDKFRLTPVAARLSELLGKPVPKPNDCIGEEVKAQVAAMQNGDVLL 122          
BLAST of FC932475 vs. ExPASy Swiss-Prot
Match: PGK_SYNP2 (Phosphoglycerate kinase OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=pgk PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 9.597e-31
Identity = 70/117 (59.83%), Postives = 84/117 (71.79%), Query Frame = 3
Query:  354 MAKKSVGELSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRPKG-VTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPESGVLL 701
            MAKKSV  L+ ADL GK+VFVR D NVPL+++  ITDDTRIRAA+PTIK+L + GAKVIL SH+GRPKG V     L P+  RLSELLG  V K DDC+G  V + +A+L    V L
Sbjct:    1 MAKKSVANLTEADLSGKRVFVRVDFNVPLNESGVITDDTRIRAALPTIKYLTEKGAKVILGSHMGRPKGQVVDSMRLTPVAARLSELLGQSVTKCDDCVGDAVNQAIANLGNGQVAL 117          
BLAST of FC932475 vs. ExPASy Swiss-Prot
Match: PGK_GLOVI (Phosphoglycerate kinase OS=Gloeobacter violaceus GN=pgk PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.253e-30
Identity = 71/116 (61.21%), Postives = 81/116 (69.83%), Query Frame = 3
Query:  354 MAKKSVGELSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRPKGVTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPESGVLL 701
            MAKK+V  L  ADLKGK+  VR D NVPLD++  ITDDTRIRAA+PTI  L   GA+VIL SHLGRPKG   +  L P+  RL ELLG  V KADD IGPEVE+ V  L +  VLL
Sbjct:    1 MAKKTVEALGAADLKGKRALVRVDFNVPLDESGQITDDTRIRAALPTIGMLTGGGARVILVSHLGRPKGFDDQLRLTPVAKRLGELLGQTVYKADDVIGPEVEEAVKKLEDGDVLL 116          
BLAST of FC932475 vs. ExPASy Swiss-Prot
Match: PGK_SYMTH (Phosphoglycerate kinase OS=Symbiobacterium thermophilum GN=pgk PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.364e-29
Identity = 68/105 (64.76%), Postives = 82/105 (78.10%), Query Frame = 3
Query:  390 DLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRPKGV-TPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPESGVLL 701
            D+KGK+VFVR D NVPL+D + ITDDTRIRAAVPTI++L++ GA  +L+SHLGRPKG    K+SLAP   RLSELLG +VV A DCIG EVE+LVA  P   V+L
Sbjct:   10 DVKGKRVFVRVDFNVPLEDGR-ITDDTRIRAAVPTIRYLVEEGAVAVLASHLGRPKGQRNEKYSLAPCARRLSELLGREVVFAPDCIGEEVERLVAEQPPGSVVL 113          
BLAST of FC932475 vs. ExPASy Swiss-Prot
Match: PGK_CARHZ (Phosphoglycerate kinase OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=pgk PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.364e-29
Identity = 67/117 (57.26%), Postives = 89/117 (76.07%), Query Frame = 3
Query:  354 MAKKSVGELSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRPKG-VTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPESGVLL 701
            M KKS+ ++   ++KGKKVFVR D NVPL++N+ ITDDTRIRAA+PT+++L + GAK+I++SHLGRPKG    K+SL P+  RL+ELLGI+V  A D +GPEVEK+   L    VLL
Sbjct:    1 MNKKSIRDV---EVKGKKVFVRVDFNVPLNENREITDDTRIRAALPTLQYLREQGAKLIVASHLGRPKGQFNEKYSLKPVAKRLAELLGIEVKMAPDVVGPEVEKMAGELRPGEVLL 114          
BLAST of FC932475 vs. ExPASy Swiss-Prot
Match: PGK_ACAM1 (Phosphoglycerate kinase OS=Acaryochloris marina (strain MBIC 11017) GN=pgk PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.364e-29
Identity = 69/117 (58.97%), Postives = 80/117 (68.38%), Query Frame = 3
Query:  354 MAKKSVGELSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRPKG-VTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPESGVLL 701
            M+KK++  L+ ADL GK+V VRAD NVPLD +  ITDDTRIRAA+PTI+ L   GAKVIL+SH GRPKG V     L P+  RLSELLG  V K DDCIG EV   V +L    V L
Sbjct:    1 MSKKTIANLTSADLSGKRVLVRADFNVPLDGDGKITDDTRIRAALPTIQDLTSKGAKVILASHFGRPKGQVNESMRLTPVAARLSELLGQAVTKCDDCIGDEVAAKVGALQNGQVAL 117          
BLAST of FC932475 vs. ExPASy Swiss-Prot
Match: PGK_GEOSF (Phosphoglycerate kinase OS=Geobacter sp. (strain FRC-32) GN=pgk PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.087e-29
Identity = 65/105 (61.90%), Postives = 81/105 (77.14%), Query Frame = 3
Query:  390 DLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRPKG-VTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPESGVLL 701
            DL+ K VF+R D NVP DDN NIT+DTRI  AVPTIK+ I+NGAKVIL+SHLGRPKG   PK+++AP   RLSELLG +V +A DC GP+V+ +VA+L    VL+
Sbjct:   11 DLREKLVFIRVDFNVPQDDNGNITEDTRIVGAVPTIKYAIENGAKVILASHLGRPKGEKKPKYTMAPAARRLSELLGKEVKQATDCFGPDVDAMVAALQPGDVLM 115          
BLAST of FC932475 vs. ExPASy Swiss-Prot
Match: PGK_CYAP7 (Phosphoglycerate kinase OS=Cyanothece sp. (strain PCC 7424) GN=pgk PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 5.266e-29
Identity = 69/117 (58.97%), Postives = 78/117 (66.67%), Query Frame = 3
Query:  354 MAKKSVGELSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRPKG-VTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPESGVLL 701
            M KK++  LS AD++GK+V VR D NVPLDD  NITDDTRIRAA+PTI+ LI  GAKVIL SH GRPKG V     L P   RLSELLG  VV  DDC+G  V + V  L    V L
Sbjct:    1 MPKKTIANLSRADVEGKRVLVRVDFNVPLDDAGNITDDTRIRAALPTIQDLISKGAKVILCSHFGRPKGKVVESMRLTPTAKRLSELLGQDVVMCDDCVGASVTEAVNKLENGQVAL 117          
The following BLAST results are available for this feature:
BLAST of FC932475 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
PGK_NOSP75.089e-3261.21Phosphoglycerate kinase OS=Nostoc punctiforme (str... [more]
PGK_SYNY34.308e-3162.39Phosphoglycerate kinase OS=Synechocystis sp. (stra... [more]
PGK_CYAP44.308e-3160.66Phosphoglycerate kinase OS=Cyanothece sp. (strain ... [more]
PGK_SYNP29.597e-3159.83Phosphoglycerate kinase OS=Synechococcus sp. (stra... [more]
PGK_GLOVI1.253e-3061.21Phosphoglycerate kinase OS=Gloeobacter violaceus G... [more]
PGK_SYMTH2.364e-2964.76Phosphoglycerate kinase OS=Symbiobacterium thermop... [more]
PGK_CARHZ2.364e-2957.26Phosphoglycerate kinase OS=Carboxydothermus hydrog... [more]
PGK_ACAM12.364e-2958.97Phosphoglycerate kinase OS=Acaryochloris marina (s... [more]
PGK_GEOSF3.087e-2961.90Phosphoglycerate kinase OS=Geobacter sp. (strain F... [more]
PGK_CYAP75.266e-2958.97Phosphoglycerate kinase OS=Cyanothece sp. (strain ... [more]

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Properties
Property NameValue
Genbank descriptionC34209A05EF PostHarveN Citrus clementina cDNA clone C34209A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932475 ID=FC932475; Name=FC932475; organism=Citrus clementina; type=EST; length=702bp
GGACGTCCACATCTTCTTCATCTTCCCCACACATATTCCTTCCCCATTCT
TCAATCAAACCAAAACCCACTTCCCATTTCCCCACTTTGTCGACAAAGTT
TCAATCTTTTGCGCCTTTACTACGCCCCTCCACTCCCGCCACATCAATGG
CTTCAGCCACCGCTCCCACTACTTTCTCTCTCGTCAAAACCGCCGCAAGT
TCATCCCTTTCTTCCCCACGCGCCTCCTTCCTGCGCATGCCCACTTCAGC
ATCCCGCAGGCTGGGGTTCTCCGCAGCCGACCCGCTGCTGACCTGCCATG
TGGCGTCGAGGCTGAGCTCGATTAAGACGAAGGGCACTCGTGCGGTGGTG
TCGATGGCGAAGAAGAGCGTGGGGGAGTTGAGTGGAGCTGATTTGAAAGG
GAAGAAGGTGTTTGTAAGAGCTGACTTGAATGTGCCTTTGGATGATAATC
AGAACATTACTGATGATACTAGAATCAGAGCTGCTGTTCCCACCATCAAG
CATTTGATTCAAAATGGAGCTAAAGTCATTCTTTCTAGCCACTTGGGAAG
ACCAAAGGGTGTTACTCCGAAATTCAGTTTGGCTCCTCTTGTGCCTCGTC
TTTCTGAACTCCTGGGCATTCAGGTTGTGAAGGCTGATGACTGCATTGGT
CCAGAGGTAGAAAAGCTTGTAGCCTCACTTCCTGAAAGCGGTGTTCTTCT
TC
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