FC932475

Overview
NameFC932475
Unique NameFC932475
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length702
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932475 vs. ExPASy Swiss-Prot
Match: PGK_PROA2 (Phosphoglycerate kinase OS=Prosthecochloris aestuarii (strain DSM 271 / SK 413) GN=pgk PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.256e-22
Identity = 56/117 (47.86%), Postives = 81/117 (69.23%), Query Frame = 3
Query:  354 MAKKSVGELSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRPKG-VTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPESGVLL 701
            M KK++ ++S    KGK++ +R D NVPLD N  IT+D RI  A+P+I+ +++ G ++IL SHLGRPKG VTP+ SLAP+  RLSELL   VV A++CIG E  +   +L +  V++
Sbjct:    1 MQKKTLSDIS---CKGKRILMRVDFNVPLDLNGTITNDKRIIEALPSIRQVLETGGRLILMSHLGRPKGKVTPELSLAPVARRLSELLDTDVVMANNCIGTEAMQQALALQDGEVMM 114          
BLAST of FC932475 vs. ExPASy Swiss-Prot
Match: PGK_CAMJD (Phosphoglycerate kinase OS=Campylobacter jejuni subsp. doylei (strain ATCC BAA-1458 / RM4099 / 269.97) GN=pgk PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.256e-22
Identity = 51/104 (49.04%), Postives = 71/104 (68.27%), Query Frame = 3
Query:  390 DLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRPKGVTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPESGVLL 701
            DL  KK+F+R D NVP DD  NITDD RIR+A+PTI++ + NG  VIL+SHLGRPK ++ K+SL P+  RL+ LL  +++ A D IG + +    +L    +LL
Sbjct:   11 DLAKKKIFIRCDFNVPQDDFLNITDDRRIRSAIPTIRYCLDNGCSVILASHLGRPKEISSKYSLEPVSKRLARLLDKEIIMAKDIIGEDAKTKAMNLKAGEILL 114          
BLAST of FC932475 vs. ExPASy Swiss-Prot
Match: PGK_STRAW (Phosphoglycerate kinase OS=Streptomyces avermitilis GN=pgk PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.641e-22
Identity = 59/107 (55.14%), Postives = 70/107 (65.42%), Query Frame = 3
Query:  363 KSVGELSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRPKGV-TPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASL 680
            K++ EL    + GK+VFVRADLNVPL D   ITDD RIRA +PT+K L + GAKV+++SHLGRPKG   P FSL P   RL ELLG  V  A D +GP     V  L
Sbjct:    2 KTIDELLAEGVDGKRVFVRADLNVPLADGL-ITDDGRIRAVLPTVKALAEAGAKVVVASHLGRPKGAPDPAFSLLPAAERLGELLGAPVAFAQDTVGPAAHDAVNGL 107          
BLAST of FC932475 vs. ExPASy Swiss-Prot
Match: PGK_SACEN (Phosphoglycerate kinase OS=Saccharopolyspora erythraea (strain NRRL 23338) GN=pgk PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.641e-22
Identity = 56/114 (49.12%), Postives = 80/114 (70.18%), Query Frame = 3
Query:  363 KSVGELSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRPKG-VTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPESGVLL 701
            K++ +L    ++G++V VRADLNVPLD ++ ITDD R+RA++PTI+ L   GA+V++++HLGRPKG   PKFSLAP+  RL ELLG  V  A D +G   +  VA+  +  V+L
Sbjct:    2 KNLDDLLSEGVRGRRVLVRADLNVPLDGDR-ITDDGRVRASLPTIEKLTGAGARVVVTAHLGRPKGEPDPKFSLAPVAARLGELLGADVALAGDVVGESAKSAVAAQADGSVVL 114          
BLAST of FC932475 vs. ExPASy Swiss-Prot
Match: PGK_PELTS (Phosphoglycerate kinase OS=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) GN=pgk PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.641e-22
Identity = 58/117 (49.57%), Postives = 79/117 (67.52%), Query Frame = 3
Query:  354 MAKKSVGELSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRPKG-VTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPESGVLL 701
            MAKK+V ++   D+KGK+V +R D NVP++ N  + DD +I+ AVPTI +LI   A+VIL SHLGRPKG V  ++ + P+  RLSELLG  VVKA DC+G      VA + +  V+L
Sbjct:    1 MAKKTVRDI---DVKGKRVLLRVDFNVPME-NGRVADDVKIKEAVPTINYLIGQKARVILVSHLGRPKGRVDERYKMDPVARRLSELLGKTVVKAGDCVGEAARSAVAQMQDGDVVL 113          
BLAST of FC932475 vs. ExPASy Swiss-Prot
Match: PGK_DESAD (Phosphoglycerate kinase OS=Desulfovibrio salexigens (strain ATCC 14822 / DSM 2638 / NCIB 8403 / VKM B-1763) GN=pgk PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.641e-22
Identity = 55/105 (52.38%), Postives = 71/105 (67.62%), Query Frame = 3
Query:  390 DLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRPKGV-TPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPESGVLL 701
            D+ GKK+ +R D NVPLD  + ITDD RI+AAVPT K+ ++ GA VI+ +HLG+PKG      SLAP   RL E LG++V  A DCIG EVEK+ A L    V++
Sbjct:    8 DIAGKKLLMRVDFNVPLD-GETITDDNRIKAAVPTFKYALEKGASVIVMAHLGKPKGKRVDSLSLAPAAKRLGEYLGMEVPLAPDCIGSEVEKMAAELKPGQVMM 111          
BLAST of FC932475 vs. ExPASy Swiss-Prot
Match: PGK_CORDI (Phosphoglycerate kinase OS=Corynebacterium diphtheriae GN=pgk PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.641e-22
Identity = 58/117 (49.57%), Postives = 78/117 (66.67%), Query Frame = 3
Query:  354 MAKKSVGELSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRPKG-VTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPESGVLL 701
            MA K++ +L    ++G+ V VR+D NVPL+D++ ITD  RI A++PTIK L+ NGA+VIL +HLGRPKG V  KFSLAP+   LSE LG  V  A D +G +  +    L +  VLL
Sbjct:    1 MAIKTLKDLLAEGVEGRHVLVRSDFNVPLNDDREITDAGRITASLPTIKALVDNGARVILMAHLGRPKGEVNEKFSLAPVAEALSEALGQYVALAGDVVGEDAHERANGLNDGDVLL 117          
BLAST of FC932475 vs. ExPASy Swiss-Prot
Match: PGK_COPPD (Phosphoglycerate kinase OS=Coprothermobacter proteolyticus (strain ATCC 35245 / DSM 5265 / BT) GN=pgk PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.641e-22
Identity = 56/106 (52.83%), Postives = 74/106 (69.81%), Query Frame = 3
Query:  387 ADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRPKGV-TPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPESGVLL 701
            A+++ K+V VR D NVPLD   N+ DD RIRAA+PTI++L++NGAKVIL SHLGRPKG    K+SL  +  RL+ELL  +++ A D +G EVE  V  L    +LL
Sbjct:    9 AEVRNKRVIVRVDFNVPLDAEGNVVDDFRIRAALPTIEYLVENGAKVILISHLGRPKGKRDKKYSLVGVAKRLAELLHKEILFAPDVVGEEVELAVNGLRSGDILL 114          
BLAST of FC932475 vs. ExPASy Swiss-Prot
Match: PGK_CLOPS (Phosphoglycerate kinase OS=Clostridium perfringens (strain SM101 / Type A) GN=pgk PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.641e-22
Identity = 57/111 (51.35%), Postives = 77/111 (69.37%), Query Frame = 3
Query:  378 LSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRPKG-VTPKFSLAPLVPRLSELLGIQVVKA--DDCIGPEVEKLVASLPESGVLL 701
            +    +KGKKV VR D NVPL D   ITD+ R+  A+PTIK+L+ NGA+VIL SH+G+PKG   P+FSLAP+  RLSE+LG +VV A  D+ +G   +K VA + +  V+L
Sbjct:    8 IEDVQVKGKKVLVRCDFNVPLKDGV-ITDENRLNGAMPTIKYLVDNGAQVILCSHMGKPKGEAKPEFSLAPVAKRLSEMLGKEVVFAADDNVVGENAKKAVAEMKDGDVVL 117          
BLAST of FC932475 vs. ExPASy Swiss-Prot
Match: PGK_BREBN (Phosphoglycerate kinase OS=Brevibacillus brevis (strain 47 / JCM 6285 / NBRC 100599) GN=pgk PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.143e-22
Identity = 60/117 (51.28%), Postives = 77/117 (65.81%), Query Frame = 3
Query:  354 MAKKSVGELSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRPKG-VTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPESGVLL 701
            M KKS+ ++   +L GK+VF R D NVP+ D   ITDDTRIRAAVPTI+ +++ GAKVIL+SH GRPKG V  +  L P+   LS LLG  V K +DC G +VE  V  +    V+L
Sbjct:    1 MNKKSIRDV---ELAGKRVFCRVDFNVPMQDGV-ITDDTRIRAAVPTIRFMMEAGAKVILASHFGRPKGQVVEEMRLTPVAAHLSSLLGKDVRKLEDCQGADVEAAVERMESGDVIL 113          
The following BLAST results are available for this feature:
BLAST of FC932475 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
PGK_PROA21.256e-2247.86Phosphoglycerate kinase OS=Prosthecochloris aestua... [more]
PGK_CAMJD1.256e-2249.04Phosphoglycerate kinase OS=Campylobacter jejuni su... [more]
PGK_STRAW1.641e-2255.14Phosphoglycerate kinase OS=Streptomyces avermitili... [more]
PGK_SACEN1.641e-2249.12Phosphoglycerate kinase OS=Saccharopolyspora eryth... [more]
PGK_PELTS1.641e-2249.57Phosphoglycerate kinase OS=Pelotomaculum thermopro... [more]
PGK_DESAD1.641e-2252.38Phosphoglycerate kinase OS=Desulfovibrio salexigen... [more]
PGK_CORDI1.641e-2249.57Phosphoglycerate kinase OS=Corynebacterium diphthe... [more]
PGK_COPPD1.641e-2252.83Phosphoglycerate kinase OS=Coprothermobacter prote... [more]
PGK_CLOPS1.641e-2251.35Phosphoglycerate kinase OS=Clostridium perfringens... [more]
PGK_BREBN2.143e-2251.28Phosphoglycerate kinase OS=Brevibacillus brevis (s... [more]

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Properties
Property NameValue
Genbank descriptionC34209A05EF PostHarveN Citrus clementina cDNA clone C34209A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932475 ID=FC932475; Name=FC932475; organism=Citrus clementina; type=EST; length=702bp
GGACGTCCACATCTTCTTCATCTTCCCCACACATATTCCTTCCCCATTCT
TCAATCAAACCAAAACCCACTTCCCATTTCCCCACTTTGTCGACAAAGTT
TCAATCTTTTGCGCCTTTACTACGCCCCTCCACTCCCGCCACATCAATGG
CTTCAGCCACCGCTCCCACTACTTTCTCTCTCGTCAAAACCGCCGCAAGT
TCATCCCTTTCTTCCCCACGCGCCTCCTTCCTGCGCATGCCCACTTCAGC
ATCCCGCAGGCTGGGGTTCTCCGCAGCCGACCCGCTGCTGACCTGCCATG
TGGCGTCGAGGCTGAGCTCGATTAAGACGAAGGGCACTCGTGCGGTGGTG
TCGATGGCGAAGAAGAGCGTGGGGGAGTTGAGTGGAGCTGATTTGAAAGG
GAAGAAGGTGTTTGTAAGAGCTGACTTGAATGTGCCTTTGGATGATAATC
AGAACATTACTGATGATACTAGAATCAGAGCTGCTGTTCCCACCATCAAG
CATTTGATTCAAAATGGAGCTAAAGTCATTCTTTCTAGCCACTTGGGAAG
ACCAAAGGGTGTTACTCCGAAATTCAGTTTGGCTCCTCTTGTGCCTCGTC
TTTCTGAACTCCTGGGCATTCAGGTTGTGAAGGCTGATGACTGCATTGGT
CCAGAGGTAGAAAAGCTTGTAGCCTCACTTCCTGAAAGCGGTGTTCTTCT
TC
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