FC932475

Overview
NameFC932475
Unique NameFC932475
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length702
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932475 vs. ExPASy Swiss-Prot
Match: PGK_ANADF (Phosphoglycerate kinase OS=Anaeromyxobacter sp. (strain Fw109-5) GN=pgk PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 5.266e-29
Identity = 72/119 (60.50%), Postives = 82/119 (68.91%), Query Frame = 3
Query:  354 MAKKSVGELSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRPKGV---TPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPESGVLL 701
            MA K++  L   DL GK+VF+R D NVPLD+ + +TDD RIRAA+PTIKH IQ  AKVIL SHLGRPKG      KFSL P   RLSELL   V+ ADDCIG  V+KLV  L E  VLL
Sbjct:    1 MALKTIDAL---DLAGKRVFIRVDFNVPLDEQRRVTDDARIRAALPTIKHAIQARAKVILGSHLGRPKGKPDDREKFSLEPAAQRLSELLKQDVILADDCIGDGVKKLVRDLKEGQVLL 116          
BLAST of FC932475 vs. ExPASy Swiss-Prot
Match: PGK_SYNSC (Phosphoglycerate kinase OS=Synechococcus sp. (strain CC9605) GN=pgk PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 8.982e-29
Identity = 67/117 (57.26%), Postives = 79/117 (67.52%), Query Frame = 3
Query:  354 MAKKSVGELSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRPKG-VTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPESGVLL 701
            MAK+S+  L+  DL GK+V VR D NVPL+D   ITDDTRIRAA+PTI  LI  GAKVILS+H GRPKG V     L P+  RLSELLG  V K D CIGP+ E  V ++    V+L
Sbjct:    1 MAKRSLASLNAGDLSGKRVLVRVDFNVPLNDTGAITDDTRIRAALPTINDLIGKGAKVILSAHFGRPKGQVNDAMRLTPVAARLSELLGKPVAKTDSCIGPDAEAKVGAMANGDVVL 117          
BLAST of FC932475 vs. ExPASy Swiss-Prot
Match: PGK_SYNPW (Phosphoglycerate kinase OS=Synechococcus sp. (strain WH7803) GN=pgk PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 8.982e-29
Identity = 67/117 (57.26%), Postives = 80/117 (68.38%), Query Frame = 3
Query:  354 MAKKSVGELSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRPKG-VTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPESGVLL 701
            MAK+S+  L+  DL GK+V VR D NVPL+D   ITDDTRIRAA+PTI  LI  GAKVILS+H GRPKG V     L P+  RLSELLG  V K D CIGP+ E  V ++ +  V+L
Sbjct:    1 MAKRSLASLNAGDLSGKRVLVRVDFNVPLNDAGAITDDTRIRAALPTINDLIGKGAKVILSAHFGRPKGQVNDAMRLTPVAARLSELLGKPVAKTDSCIGPDAEAKVGAMADGDVVL 117          
BLAST of FC932475 vs. ExPASy Swiss-Prot
Match: PGK_PROMA (Phosphoglycerate kinase OS=Prochlorococcus marinus GN=pgk PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.173e-28
Identity = 67/117 (57.26%), Postives = 83/117 (70.94%), Query Frame = 3
Query:  354 MAKKSVGELSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRPKG-VTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPESGVLL 701
            MAK+S+  LS  DL GK+V VR D NVPL++  +ITDDTRIRAA+PTI+HLI+  A+VILS+H GRPKG V     L P+  RLSELLG  VVK + CIGP+ EK V  +    V+L
Sbjct:    1 MAKRSLSNLSVEDLCGKRVLVRVDFNVPLNEEGSITDDTRIRAALPTIQHLIEKEARVILSAHFGRPKGKVNEDMRLTPVSQRLSELLGKTVVKTESCIGPDAEKKVHEMSNGDVVL 117          
BLAST of FC932475 vs. ExPASy Swiss-Prot
Match: PGK_EXIS2 (Phosphoglycerate kinase OS=Exiguobacterium sibiricum (strain DSM 17290 / JCM 13490 / 255-15) GN=pgk PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.173e-28
Identity = 67/117 (57.26%), Postives = 87/117 (74.36%), Query Frame = 3
Query:  354 MAKKSVGELSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRPKG-VTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPESGVLL 701
            M KKS+ ++   D+KGK+VF R D NVPL+D + ITDDTRIRAA+PTIKHL+  GAKVIL+SH+GRPKG   P+FSLAP+V RLSELLG  +   ++  GP  E+ V+ L E  V++
Sbjct:    1 MNKKSIRDI---DVKGKRVFTRVDFNVPLEDGK-ITDDTRIRAALPTIKHLVDGGAKVILASHMGRPKGEKNPEFSLAPVVARLSELLGKDIKLVEEAYGPVAEEAVSKLEEGDVIV 113          
BLAST of FC932475 vs. ExPASy Swiss-Prot
Match: PGK_THEEB (Phosphoglycerate kinase OS=Thermosynechococcus elongatus (strain BP-1) GN=pgk PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.001e-28
Identity = 65/102 (63.73%), Postives = 75/102 (73.53%), Query Frame = 3
Query:  354 MAKKSVGELSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRPKGVTPKFSLAPLVPRLSELLGIQVVKADDCIGPEV 659
            M+KKSV +LS ADL+GK+V VR D NVP+D+   ITD+TRIRAA+PTI+ LI  GAKVIL SH GRPKGV  K  L P+  RLSELL   V K DDCIG  V
Sbjct:    1 MSKKSVAQLSAADLEGKRVLVRVDFNVPVDEKGVITDETRIRAALPTIQDLISKGAKVILVSHFGRPKGVDEKLRLTPVAQRLSELLHKPVAKLDDCIGDAV 102          
BLAST of FC932475 vs. ExPASy Swiss-Prot
Match: PGK_TRIEI (Phosphoglycerate kinase OS=Trichodesmium erythraeum (strain IMS101) GN=pgk PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.413e-28
Identity = 69/117 (58.97%), Postives = 84/117 (71.79%), Query Frame = 3
Query:  354 MAKKSVGELSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRPKG-VTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPESGVLL 701
            M KK+V  LS +DL GKKV +RAD NVP+D N +ITDDTRIRAA+PTI+ L + GAKVIL+SH GRPKG V  K  L  +  RLSE+LG +V K DDCIG EV   VA + +  V+L
Sbjct:    1 MTKKTVASLSKSDLSGKKVLMRADFNVPVD-NGSITDDTRIRAALPTIQDLTEKGAKVILTSHFGRPKGKVNEKMRLTLVGERLSEVLGKEVKKCDDCIGDEVTSTVAEMKDGDVVL 116          
BLAST of FC932475 vs. ExPASy Swiss-Prot
Match: PGK_SYNPX (Phosphoglycerate kinase OS=Synechococcus sp. (strain WH8102) GN=pgk PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.458e-28
Identity = 66/117 (56.41%), Postives = 80/117 (68.38%), Query Frame = 3
Query:  354 MAKKSVGELSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRPKG-VTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPESGVLL 701
            MAK+S+  L+  DL GK+V VR D NVPL++   ITDDTRIRAA+PTI  LI  GAKVILS+H GRPKG V     L P+  RLSELLG  V K D CIGP+ E  V ++ +  V+L
Sbjct:    1 MAKRSLASLNAGDLSGKRVLVRVDFNVPLNEAGAITDDTRIRAALPTINDLIGKGAKVILSAHFGRPKGQVNDAMRLTPVAARLSELLGKPVAKTDSCIGPDAEAKVNAMADGDVVL 117          
BLAST of FC932475 vs. ExPASy Swiss-Prot
Match: PGK_SYNS9 (Phosphoglycerate kinase OS=Synechococcus sp. (strain CC9902) GN=pgk PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 5.822e-28
Identity = 64/117 (54.70%), Postives = 79/117 (67.52%), Query Frame = 3
Query:  354 MAKKSVGELSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRPKG-VTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPESGVLL 701
            MAK+S+  L+  DL GK+V VR D NVPL+D   ITDDTRIRAA+PTI  L+  GAKV+L++H GRPKG V     L P+  RLSELLG  V K D CIGP+ E  V ++    V+L
Sbjct:    1 MAKRSLASLNAGDLSGKRVLVRVDFNVPLNDAGAITDDTRIRAALPTINDLVGKGAKVVLAAHFGRPKGQVNEAMRLTPVAARLSELLGKTVTKTDSCIGPDAEAKVGAMANGDVVL 117          
BLAST of FC932475 vs. ExPASy Swiss-Prot
Match: PGK_GEOMG (Phosphoglycerate kinase OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=pgk PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 5.822e-28
Identity = 66/117 (56.41%), Postives = 84/117 (71.79%), Query Frame = 3
Query:  354 MAKKSVGELSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRPKGV-TPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPESGVLL 701
            MA + + E+    LKGKKVF+R D NVPLD++QNIT+DTRIRA +PTI   +  GAKVIL+SHLGRPKG   PK+S+AP   RLS LL  +V  A DCIG EV+K++ ++    VLL
Sbjct:    1 MAIRYIDEIES--LKGKKVFIRVDFNVPLDEHQNITEDTRIRAVLPTINFALDAGAKVILASHLGRPKGERKPKYSMAPAAKRLSRLLNKEVQLAPDCIGDEVKKMIDAMKPGEVLL 115          
The following BLAST results are available for this feature:
BLAST of FC932475 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
PGK_ANADF5.266e-2960.50Phosphoglycerate kinase OS=Anaeromyxobacter sp. (s... [more]
PGK_SYNSC8.982e-2957.26Phosphoglycerate kinase OS=Synechococcus sp. (stra... [more]
PGK_SYNPW8.982e-2957.26Phosphoglycerate kinase OS=Synechococcus sp. (stra... [more]
PGK_PROMA1.173e-2857.26Phosphoglycerate kinase OS=Prochlorococcus marinus... [more]
PGK_EXIS21.173e-2857.26Phosphoglycerate kinase OS=Exiguobacterium sibiric... [more]
PGK_THEEB2.001e-2863.73Phosphoglycerate kinase OS=Thermosynechococcus elo... [more]
PGK_TRIEI3.413e-2858.97Phosphoglycerate kinase OS=Trichodesmium erythraeu... [more]
PGK_SYNPX4.458e-2856.41Phosphoglycerate kinase OS=Synechococcus sp. (stra... [more]
PGK_SYNS95.822e-2854.70Phosphoglycerate kinase OS=Synechococcus sp. (stra... [more]
PGK_GEOMG5.822e-2856.41Phosphoglycerate kinase OS=Geobacter metallireduce... [more]

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Properties
Property NameValue
Genbank descriptionC34209A05EF PostHarveN Citrus clementina cDNA clone C34209A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932475 ID=FC932475; Name=FC932475; organism=Citrus clementina; type=EST; length=702bp
GGACGTCCACATCTTCTTCATCTTCCCCACACATATTCCTTCCCCATTCT
TCAATCAAACCAAAACCCACTTCCCATTTCCCCACTTTGTCGACAAAGTT
TCAATCTTTTGCGCCTTTACTACGCCCCTCCACTCCCGCCACATCAATGG
CTTCAGCCACCGCTCCCACTACTTTCTCTCTCGTCAAAACCGCCGCAAGT
TCATCCCTTTCTTCCCCACGCGCCTCCTTCCTGCGCATGCCCACTTCAGC
ATCCCGCAGGCTGGGGTTCTCCGCAGCCGACCCGCTGCTGACCTGCCATG
TGGCGTCGAGGCTGAGCTCGATTAAGACGAAGGGCACTCGTGCGGTGGTG
TCGATGGCGAAGAAGAGCGTGGGGGAGTTGAGTGGAGCTGATTTGAAAGG
GAAGAAGGTGTTTGTAAGAGCTGACTTGAATGTGCCTTTGGATGATAATC
AGAACATTACTGATGATACTAGAATCAGAGCTGCTGTTCCCACCATCAAG
CATTTGATTCAAAATGGAGCTAAAGTCATTCTTTCTAGCCACTTGGGAAG
ACCAAAGGGTGTTACTCCGAAATTCAGTTTGGCTCCTCTTGTGCCTCGTC
TTTCTGAACTCCTGGGCATTCAGGTTGTGAAGGCTGATGACTGCATTGGT
CCAGAGGTAGAAAAGCTTGTAGCCTCACTTCCTGAAAGCGGTGTTCTTCT
TC
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