FC932475

Overview
NameFC932475
Unique NameFC932475
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length702
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932475 vs. ExPASy Swiss-Prot
Match: PGK_LEUCK (Phosphoglycerate kinase OS=Leuconostoc citreum (strain KM20) GN=pgk PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.652e-15
Identity = 52/118 (44.07%), Postives = 70/118 (59.32%), Query Frame = 3
Query:  354 MAKKSVGELSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRPKGVTPK--FSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPESGVLL 701
            MAK +V +L   +L GKKV +R D NVP+     I +D RI AA+PTIK++++N  + IL SHLGR K    K   SLAP+  RL ELLG  V       G E+E  + +L +  VL+
Sbjct:    1 MAKLTVSDL---ELSGKKVLMRVDFNVPIKAGV-IGNDNRIVAALPTIKYVLENNGRAILFSHLGRIKSEDDKKELSLAPVAARLGELLGKNVKFVPHTRGEELESAINALQDGEVLM 114          
BLAST of FC932475 vs. ExPASy Swiss-Prot
Match: PGK_ALCBS (Phosphoglycerate kinase OS=Alcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM 11573) GN=pgk PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.652e-15
Identity = 44/93 (47.31%), Postives = 60/93 (64.52%), Query Frame = 3
Query:  378 LSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRPK--GVTPKFSLAPLVPRLSELLGIQVVKADDCIG 650
            ++  DL GK+V +R DLNVP+ D + +T D RIRA++PTI+H ++ GAKV+L SHLGRP       +FSL P+   L  LLG  V    D +G
Sbjct:    6 MTDLDLAGKRVLIREDLNVPVKDGK-VTSDARIRASLPTIEHALKAGAKVMLMSHLGRPTEGEYAEEFSLQPVADHLGGLLGRDVPLVKDWLG 97          
BLAST of FC932475 vs. ExPASy Swiss-Prot
Match: PGK_THISH (Phosphoglycerate kinase OS=Thioalkalivibrio sp. (strain HL-EbGR7) GN=pgk PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.382e-15
Identity = 46/89 (51.69%), Postives = 65/89 (73.03%), Query Frame = 3
Query:  366 SVGELSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRP-KGV-TPKFSLAPLVPRLSELLGIQV 626
            SV +++  DL GK+V +R DLNVP+ D + +T D RIRA++PTI+H ++ GAKV+L SHLGRP +GV + + SL P+   LS LLG +V
Sbjct:    2 SVIKMTDLDLAGKRVLIREDLNVPVKDGK-VTSDARIRASLPTIEHAMKAGAKVMLMSHLGRPEEGVFSEEDSLKPVAEHLSGLLGKEV 89          
BLAST of FC932475 vs. ExPASy Swiss-Prot
Match: PGK_STRMU (Phosphoglycerate kinase OS=Streptococcus mutans GN=pgk PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.382e-15
Identity = 53/118 (44.92%), Postives = 73/118 (61.86%), Query Frame = 3
Query:  354 MAKKSVGELSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRPKGVTPK--FSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPESGVLL 701
            MAK +V ++   DLKGKKV VR D NVP+ D   IT+D RI AA+PTIK++I++G + +L SHLGR K    K   SLAP+   L++ L  +VV      G ++E  + +L    VLL
Sbjct:    1 MAKLTVKDV---DLKGKKVLVRVDFNVPVKDGV-ITNDNRITAALPTIKYIIEHGGRAVLFSHLGRVKEEADKKGKSLAPVAADLAKKLVQEVVFPGVTRGEQLEAAINALKNGEVLL 114          
BLAST of FC932475 vs. ExPASy Swiss-Prot
Match: PGK_MYCLE (Phosphoglycerate kinase OS=Mycobacterium leprae GN=pgk PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.382e-15
Identity = 48/108 (44.44%), Postives = 69/108 (63.89%), Query Frame = 3
Query:  393 LKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRPK-GVTPKFSLAPLVPRLSELLG--IQVVKADD--CIGPEVEKLVASLPESGVLL 701
            + G+ V VR DLNVPL D+  ITD  R+ A+VPT+K L++ GAK+++++HLGRPK G  PK SL P+   L E LG  +Q+V + D   +G +    V  L +  +LL
Sbjct:   14 VSGRCVLVRCDLNVPLGDDGAITDLGRVTASVPTLKALLEAGAKIVVAAHLGRPKNGPDPKLSLEPVAAALGEQLGQNVQLVCSTDRSPVGGDALACVERLTDGDLLL 121          
BLAST of FC932475 vs. ExPASy Swiss-Prot
Match: PGK_MYCLB (Phosphoglycerate kinase OS=Mycobacterium leprae (strain Br4923) GN=pgk PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.382e-15
Identity = 48/108 (44.44%), Postives = 69/108 (63.89%), Query Frame = 3
Query:  393 LKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRPK-GVTPKFSLAPLVPRLSELLG--IQVVKADD--CIGPEVEKLVASLPESGVLL 701
            + G+ V VR DLNVPL D+  ITD  R+ A+VPT+K L++ GAK+++++HLGRPK G  PK SL P+   L E LG  +Q+V + D   +G +    V  L +  +LL
Sbjct:   14 VSGRCVLVRCDLNVPLGDDGAITDLGRVTASVPTLKALLEAGAKIVVAAHLGRPKNGPDPKLSLEPVAAALGEQLGQNVQLVCSTDRSPVGGDALACVERLTDGDLLL 121          
BLAST of FC932475 vs. ExPASy Swiss-Prot
Match: PGK_THET8 (Phosphoglycerate kinase OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=pgk PE=1 SV=3)

HSP 1 Score: 80.4925 bits (197), Expect = 9.642e-15
Identity = 37/67 (55.22%), Postives = 51/67 (76.12%), Query Frame = 3
Query:  390 DLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRPKGVTPKFSLAPL 590
            D KGK+V VR D NVP+ D + + D+TRI  ++PT++HL+  GA ++L SHLGRPKG  PK+SLAP+
Sbjct:    8 DPKGKRVLVRVDYNVPVQDGK-VQDETRILESLPTLRHLLAGGASLVLLSHLGRPKGPDPKYSLAPV 73          
BLAST of FC932475 vs. ExPASy Swiss-Prot
Match: PGK_HALHL (Phosphoglycerate kinase OS=Halorhodospira halophila (strain DSM 244 / SL1) GN=pgk PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.642e-15
Identity = 46/110 (41.82%), Postives = 66/110 (60.00%), Query Frame = 3
Query:  378 LSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRPK--GVTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPESGVLL 701
            ++  DL GK+V +R DLNVP+ D Q + DDTR+RAA  +I+  +Q G +V++ SHLGRPK      + S+AP+  RL E+LG +V    D +          +PE GV L
Sbjct:    6 MTDLDLTGKRVLIREDLNVPIKDGQ-VADDTRVRAAAESIRQAMQAGGRVLVMSHLGRPKEGEYDAEASMAPVARRLGEILGCEVPVVRDWLEG------VDVPEGGVAL 108          
BLAST of FC932475 vs. ExPASy Swiss-Prot
Match: PGK_VIBVY (Phosphoglycerate kinase OS=Vibrio vulnificus (strain YJ016) GN=pgk PE=3 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 1.259e-14
Identity = 45/94 (47.87%), Postives = 65/94 (69.15%), Query Frame = 3
Query:  366 SVGELSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRPK--GVTPKFSLAPLVPRLSELLGIQVVKADD 641
            SV +++  DL GK+VF+RADLNVP+ D + +T D RI A++PTIK  ++ GAKV+++SHLGRP       +FSL P+V  L++ L  +V  A D
Sbjct:    2 SVIKMTDLDLAGKRVFIRADLNVPVKDGK-VTSDARIIASLPTIKLCLEAGAKVMVTSHLGRPTEGEYAEEFSLQPVVNYLNDALDCEVKLAKD 94          
BLAST of FC932475 vs. ExPASy Swiss-Prot
Match: PGK_VIBVU (Phosphoglycerate kinase OS=Vibrio vulnificus GN=pgk PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.259e-14
Identity = 45/94 (47.87%), Postives = 65/94 (69.15%), Query Frame = 3
Query:  366 SVGELSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRPK--GVTPKFSLAPLVPRLSELLGIQVVKADD 641
            SV +++  DL GK+VF+RADLNVP+ D + +T D RI A++PTIK  ++ GAKV+++SHLGRP       +FSL P+V  L++ L  +V  A D
Sbjct:    2 SVIKMTDLDLAGKRVFIRADLNVPVKDGK-VTSDARIIASLPTIKLCLEAGAKVMVTSHLGRPTEGEYAEEFSLQPVVNYLNDALDCEVKLAKD 94          
The following BLAST results are available for this feature:
BLAST of FC932475 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
PGK_LEUCK5.652e-1544.07Phosphoglycerate kinase OS=Leuconostoc citreum (st... [more]
PGK_ALCBS5.652e-1547.31Phosphoglycerate kinase OS=Alcanivorax borkumensis... [more]
PGK_THISH7.382e-1551.69Phosphoglycerate kinase OS=Thioalkalivibrio sp. (s... [more]
PGK_STRMU7.382e-1544.92Phosphoglycerate kinase OS=Streptococcus mutans GN... [more]
PGK_MYCLE7.382e-1544.44Phosphoglycerate kinase OS=Mycobacterium leprae GN... [more]
PGK_MYCLB7.382e-1544.44Phosphoglycerate kinase OS=Mycobacterium leprae (s... [more]
PGK_THET89.642e-1555.22Phosphoglycerate kinase OS=Thermus thermophilus (s... [more]
PGK_HALHL9.642e-1541.82Phosphoglycerate kinase OS=Halorhodospira halophil... [more]
PGK_VIBVY1.259e-1447.87Phosphoglycerate kinase OS=Vibrio vulnificus (stra... [more]
PGK_VIBVU1.259e-1447.87Phosphoglycerate kinase OS=Vibrio vulnificus GN=pg... [more]

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Properties
Property NameValue
Genbank descriptionC34209A05EF PostHarveN Citrus clementina cDNA clone C34209A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932475 ID=FC932475; Name=FC932475; organism=Citrus clementina; type=EST; length=702bp
GGACGTCCACATCTTCTTCATCTTCCCCACACATATTCCTTCCCCATTCT
TCAATCAAACCAAAACCCACTTCCCATTTCCCCACTTTGTCGACAAAGTT
TCAATCTTTTGCGCCTTTACTACGCCCCTCCACTCCCGCCACATCAATGG
CTTCAGCCACCGCTCCCACTACTTTCTCTCTCGTCAAAACCGCCGCAAGT
TCATCCCTTTCTTCCCCACGCGCCTCCTTCCTGCGCATGCCCACTTCAGC
ATCCCGCAGGCTGGGGTTCTCCGCAGCCGACCCGCTGCTGACCTGCCATG
TGGCGTCGAGGCTGAGCTCGATTAAGACGAAGGGCACTCGTGCGGTGGTG
TCGATGGCGAAGAAGAGCGTGGGGGAGTTGAGTGGAGCTGATTTGAAAGG
GAAGAAGGTGTTTGTAAGAGCTGACTTGAATGTGCCTTTGGATGATAATC
AGAACATTACTGATGATACTAGAATCAGAGCTGCTGTTCCCACCATCAAG
CATTTGATTCAAAATGGAGCTAAAGTCATTCTTTCTAGCCACTTGGGAAG
ACCAAAGGGTGTTACTCCGAAATTCAGTTTGGCTCCTCTTGTGCCTCGTC
TTTCTGAACTCCTGGGCATTCAGGTTGTGAAGGCTGATGACTGCATTGGT
CCAGAGGTAGAAAAGCTTGTAGCCTCACTTCCTGAAAGCGGTGTTCTTCT
TC
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