FC932475

Overview
NameFC932475
Unique NameFC932475
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length702
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932475 vs. ExPASy Swiss-Prot
Match: PGK_LACC3 (Phosphoglycerate kinase OS=Lactobacillus casei (strain ATCC 334) GN=pgk PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.664e-14
Identity = 52/118 (44.07%), Postives = 68/118 (57.63%), Query Frame = 3
Query:  354 MAKKSVGELSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRPKGV--TPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPESGVLL 701
            MAK  V +L   D+K KKV +R D NVP+ D   I DD RI AA+PTI+++I +G K IL SHLGR K      K +L P+  RLSELL   V       G E+E  +  + +  VL+
Sbjct:    1 MAKLIVSDL---DVKDKKVLIRVDFNVPIKDGV-IGDDNRIVAALPTIQYVIDHGGKAILLSHLGRVKTEEDKAKLTLKPVAERLSELLKKPVTFVPATRGKELEDAINKMNDGDVLV 114          
BLAST of FC932475 vs. ExPASy Swiss-Prot
Match: PGK_ERWT9 (Phosphoglycerate kinase OS=Erwinia tasmaniensis (strain DSM 17950 / Et1/99) GN=pgk PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.664e-14
Identity = 43/90 (47.78%), Postives = 63/90 (70.00%), Query Frame = 3
Query:  366 SVGELSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRPK--GVTPKFSLAPLVPRLSELLGIQVV 629
            SV +++  DL GK+V +RADLNVP+ + + +T D RIRA++PTI+  ++ GAKV+++SHLGRP       +FSL P+V  L E LG + V
Sbjct:    2 SVIKMTDLDLAGKRVLIRADLNVPVKEGK-VTSDARIRASLPTIEAALKQGAKVMVTSHLGRPTEGEYNEEFSLLPVVNYLKEKLGAENV 90          
BLAST of FC932475 vs. ExPASy Swiss-Prot
Match: PGK_YERE8 (Phosphoglycerate kinase OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=pgk PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.785e-14
Identity = 44/94 (46.81%), Postives = 63/94 (67.02%), Query Frame = 3
Query:  366 SVGELSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRPK--GVTPKFSLAPLVPRLSELLGIQVVKADD 641
            SV +++  DL GK+V +RADLNVP+ D + +T D RIRA++PTI+  ++ GAKV+++SHLGRP       +FSL P+V  L + L   V  A D
Sbjct:    2 SVIKMTDLDLAGKRVLIRADLNVPVKDGK-VTSDARIRASLPTIETALKQGAKVMVTSHLGRPTEGEYNEEFSLLPVVNYLKDKLSAPVRLAKD 94          
BLAST of FC932475 vs. ExPASy Swiss-Prot
Match: PGK_SHISS (Phosphoglycerate kinase OS=Shigella sonnei (strain Ss046) GN=pgk PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.785e-14
Identity = 44/93 (47.31%), Postives = 66/93 (70.97%), Query Frame = 3
Query:  366 SVGELSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRPK--GVTPKFSLAPLVPRLSELLG--IQVVK 632
            SV +++  DL GK+VF+RADLNVP+ D + +T D RIRA++PTI+  ++ GAKV+++SHLGRP       +FSL P+V  L + L   +++VK
Sbjct:    2 SVIKMTDLDLAGKRVFIRADLNVPVKDGK-VTSDARIRASLPTIELALKQGAKVMVTSHLGRPTEGEYNEEFSLLPVVNYLKDKLSNPVRLVK 93          
BLAST of FC932475 vs. ExPASy Swiss-Prot
Match: PGK_SHIFL (Phosphoglycerate kinase OS=Shigella flexneri GN=pgk PE=3 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 4.785e-14
Identity = 44/93 (47.31%), Postives = 66/93 (70.97%), Query Frame = 3
Query:  366 SVGELSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRPK--GVTPKFSLAPLVPRLSELLG--IQVVK 632
            SV +++  DL GK+VF+RADLNVP+ D + +T D RIRA++PTI+  ++ GAKV+++SHLGRP       +FSL P+V  L + L   +++VK
Sbjct:    2 SVIKMTDLDLAGKRVFIRADLNVPVKDGK-VTSDARIRASLPTIELALKQGAKVMVTSHLGRPTEGEYNEEFSLLPVVNYLKDKLSNPVRLVK 93          
BLAST of FC932475 vs. ExPASy Swiss-Prot
Match: PGK_SHIF8 (Phosphoglycerate kinase OS=Shigella flexneri serotype 5b (strain 8401) GN=pgk PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.785e-14
Identity = 44/93 (47.31%), Postives = 66/93 (70.97%), Query Frame = 3
Query:  366 SVGELSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRPK--GVTPKFSLAPLVPRLSELLG--IQVVK 632
            SV +++  DL GK+VF+RADLNVP+ D + +T D RIRA++PTI+  ++ GAKV+++SHLGRP       +FSL P+V  L + L   +++VK
Sbjct:    2 SVIKMTDLDLAGKRVFIRADLNVPVKDGK-VTSDARIRASLPTIELALKQGAKVMVTSHLGRPTEGEYNEEFSLLPVVNYLKDKLSNPVRLVK 93          
BLAST of FC932475 vs. ExPASy Swiss-Prot
Match: PGK_SHIDS (Phosphoglycerate kinase OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=pgk PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.785e-14
Identity = 44/93 (47.31%), Postives = 66/93 (70.97%), Query Frame = 3
Query:  366 SVGELSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRPK--GVTPKFSLAPLVPRLSELLG--IQVVK 632
            SV +++  DL GK+VF+RADLNVP+ D + +T D RIRA++PTI+  ++ GAKV+++SHLGRP       +FSL P+V  L + L   +++VK
Sbjct:    2 SVIKMTDLDLAGKRVFIRADLNVPVKDGK-VTSDARIRASLPTIELALKQGAKVMVTSHLGRPTEGEYNEEFSLLPVVNYLKDKLSNPVRLVK 93          
BLAST of FC932475 vs. ExPASy Swiss-Prot
Match: PGK_SHIBS (Phosphoglycerate kinase OS=Shigella boydii serotype 4 (strain Sb227) GN=pgk PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.785e-14
Identity = 44/93 (47.31%), Postives = 66/93 (70.97%), Query Frame = 3
Query:  366 SVGELSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRPK--GVTPKFSLAPLVPRLSELLG--IQVVK 632
            SV +++  DL GK+VF+RADLNVP+ D + +T D RIRA++PTI+  ++ GAKV+++SHLGRP       +FSL P+V  L + L   +++VK
Sbjct:    2 SVIKMTDLDLAGKRVFIRADLNVPVKDGK-VTSDARIRASLPTIELALKQGAKVMVTSHLGRPTEGEYNEEFSLLPVVNYLKDKLSNPVRLVK 93          
BLAST of FC932475 vs. ExPASy Swiss-Prot
Match: PGK_PHOLU (Phosphoglycerate kinase OS=Photorhabdus luminescens GN=pgk PE=3 SV=3)

HSP 1 Score: 78.1814 bits (191), Expect = 4.785e-14
Identity = 43/89 (48.31%), Postives = 61/89 (68.54%), Query Frame = 3
Query:  366 SVGELSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRP--KGVTPKFSLAPLVPRLSELLGIQV 626
            SV +++  DL GK+V +RADLNVP+ D + +T D RIRA++PTI+  ++ GAKV+++SHLGRP       +FSL P+V  L E L   V
Sbjct:    2 SVIKMTDLDLAGKRVLIRADLNVPVKDGK-VTSDARIRASLPTIEAALKQGAKVMITSHLGRPIEGEYNEEFSLKPVVDYLKEKLSSSV 89          
BLAST of FC932475 vs. ExPASy Swiss-Prot
Match: PGK_PHOLL (Phosphoglycerate kinase OS=Photorhabdus luminescens subsp. laumondii GN=pgk PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.785e-14
Identity = 42/89 (47.19%), Postives = 62/89 (69.66%), Query Frame = 3
Query:  366 SVGELSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRPK--GVTPKFSLAPLVPRLSELLGIQV 626
            SV +++  DL GK++ +RADLNVP+ D + +T D RIRA++PTI+  ++ GAKV+++SHLGRP     + +FSL P+V  L E L   V
Sbjct:    2 SVIKMTDLDLAGKRILIRADLNVPVKDGK-VTSDARIRASLPTIEAALKQGAKVMITSHLGRPTEGEYSEEFSLKPVVDYLEEKLSSPV 89          
The following BLAST results are available for this feature:
BLAST of FC932475 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
PGK_LACC33.664e-1444.07Phosphoglycerate kinase OS=Lactobacillus casei (st... [more]
PGK_ERWT93.664e-1447.78Phosphoglycerate kinase OS=Erwinia tasmaniensis (s... [more]
PGK_YERE84.785e-1446.81Phosphoglycerate kinase OS=Yersinia enterocolitica... [more]
PGK_SHISS4.785e-1447.31Phosphoglycerate kinase OS=Shigella sonnei (strain... [more]
PGK_SHIFL4.785e-1447.31Phosphoglycerate kinase OS=Shigella flexneri GN=pg... [more]
PGK_SHIF84.785e-1447.31Phosphoglycerate kinase OS=Shigella flexneri serot... [more]
PGK_SHIDS4.785e-1447.31Phosphoglycerate kinase OS=Shigella dysenteriae se... [more]
PGK_SHIBS4.785e-1447.31Phosphoglycerate kinase OS=Shigella boydii serotyp... [more]
PGK_PHOLU4.785e-1448.31Phosphoglycerate kinase OS=Photorhabdus luminescen... [more]
PGK_PHOLL4.785e-1447.19Phosphoglycerate kinase OS=Photorhabdus luminescen... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34209A05EF PostHarveN Citrus clementina cDNA clone C34209A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932475 ID=FC932475; Name=FC932475; organism=Citrus clementina; type=EST; length=702bp
GGACGTCCACATCTTCTTCATCTTCCCCACACATATTCCTTCCCCATTCT
TCAATCAAACCAAAACCCACTTCCCATTTCCCCACTTTGTCGACAAAGTT
TCAATCTTTTGCGCCTTTACTACGCCCCTCCACTCCCGCCACATCAATGG
CTTCAGCCACCGCTCCCACTACTTTCTCTCTCGTCAAAACCGCCGCAAGT
TCATCCCTTTCTTCCCCACGCGCCTCCTTCCTGCGCATGCCCACTTCAGC
ATCCCGCAGGCTGGGGTTCTCCGCAGCCGACCCGCTGCTGACCTGCCATG
TGGCGTCGAGGCTGAGCTCGATTAAGACGAAGGGCACTCGTGCGGTGGTG
TCGATGGCGAAGAAGAGCGTGGGGGAGTTGAGTGGAGCTGATTTGAAAGG
GAAGAAGGTGTTTGTAAGAGCTGACTTGAATGTGCCTTTGGATGATAATC
AGAACATTACTGATGATACTAGAATCAGAGCTGCTGTTCCCACCATCAAG
CATTTGATTCAAAATGGAGCTAAAGTCATTCTTTCTAGCCACTTGGGAAG
ACCAAAGGGTGTTACTCCGAAATTCAGTTTGGCTCCTCTTGTGCCTCGTC
TTTCTGAACTCCTGGGCATTCAGGTTGTGAAGGCTGATGACTGCATTGGT
CCAGAGGTAGAAAAGCTTGTAGCCTCACTTCCTGAAAGCGGTGTTCTTCT
TC
back to top