FC932475

Overview
NameFC932475
Unique NameFC932475
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length702
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932475 vs. ExPASy Swiss-Prot
Match: PGK_BACC1 (Phosphoglycerate kinase OS=Bacillus cereus (strain ATCC 10987) GN=pgk PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.434e-26
Identity = 64/117 (54.70%), Postives = 87/117 (74.36%), Query Frame = 3
Query:  354 MAKKSVGELSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRPKG-VTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPESGVLL 701
            M KKS+ ++   DLKGK+VF R D NVP+ + + ITD+TRIRAA+PTI++L++ GAKVIL+SHLGRPKG V  +  L P+  RL ELLG  V KAD+  GP V+++VA++ E  VL+
Sbjct:    1 MNKKSIRDV---DLKGKRVFCRVDFNVPMKEGK-ITDETRIRAALPTIQYLVEQGAKVILASHLGRPKGQVVEEMRLTPVAARLGELLGKDVKKADEAFGPAVQEMVAAMNEGDVLV 113          
BLAST of FC932475 vs. ExPASy Swiss-Prot
Match: PGK_ANASK (Phosphoglycerate kinase OS=Anaeromyxobacter sp. (strain K) GN=pgk PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.446e-26
Identity = 63/111 (56.76%), Postives = 75/111 (67.57%), Query Frame = 3
Query:  378 LSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRPKGV---TPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPESGVLL 701
            +   DL GK+VF+R D NVPLD    +TDD RIRAA+PTI+H IQ  AKVIL+SHLGRPKG      K +L P   RLSELL   V+ ADDC+G  V+KLV  L +  VLL
Sbjct:    6 IDALDLAGKRVFIRVDFNVPLDPQGRVTDDARIRAALPTIRHAIQAKAKVILASHLGRPKGKPDDRQKLTLEPAAVRLSELLSQDVILADDCVGDGVKKLVRDLKDGHVLL 116          
BLAST of FC932475 vs. ExPASy Swiss-Prot
Match: PGK_ANADE (Phosphoglycerate kinase OS=Anaeromyxobacter dehalogenans (strain 2CP-C) GN=pgk PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.446e-26
Identity = 63/111 (56.76%), Postives = 75/111 (67.57%), Query Frame = 3
Query:  378 LSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRPKGV---TPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPESGVLL 701
            +   DL GK+VF+R D NVPLD    +TDD RIRAA+PTI+H IQ  AKVIL+SHLGRPKG      K +L P   RLSELL   V+ ADDC+G  V+KLV  L +  VLL
Sbjct:    6 IDALDLAGKRVFIRVDFNVPLDPQGKVTDDARIRAALPTIRHAIQAKAKVILASHLGRPKGKPDDRTKLTLEPAAVRLSELLSQDVILADDCVGDGVKKLVRDLKDGHVLL 116          
BLAST of FC932475 vs. ExPASy Swiss-Prot
Match: PGK_CHLP8 (Phosphoglycerate kinase OS=Chlorobaculum parvum (strain NCIB 8327) GN=pgk PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.195e-26
Identity = 62/117 (52.99%), Postives = 85/117 (72.65%), Query Frame = 3
Query:  354 MAKKSVGELSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRPKG-VTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPESGVLL 701
            M KK++ ++S   L+GK+V +R D NVPLD ++NITDD RI  A+P+I+ +I+ G ++IL SHLGRPKG V P FSLAP   RLSELLG+ V  A+DCIG EV + V +L +  V++
Sbjct:    1 MQKKTLSDIS---LQGKRVLMRVDFNVPLDQDRNITDDKRIVGALPSIRKVIEEGGRLILMSHLGRPKGKVNPAFSLAPAAKRLSELLGMPVTMANDCIGTEVMQEVLALQDGEVMM 114          
BLAST of FC932475 vs. ExPASy Swiss-Prot
Match: PGK_THETN (Phosphoglycerate kinase OS=Thermoanaerobacter tengcongensis GN=pgk PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.449e-26
Identity = 64/117 (54.70%), Postives = 83/117 (70.94%), Query Frame = 3
Query:  354 MAKKSVGELSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRPKG-VTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPESGVLL 701
            M KK+V ++   D+ GK+V VR D NVP+D+N+NITDD RIR A+PTI++LI + AKVIL SHLGRPKG   P +SL P+  RLSELL   V+ A+D IG + +   A+L E  VLL
Sbjct:    1 MKKKTVRDI---DVSGKRVLVRVDFNVPMDENKNITDDRRIREALPTIEYLINHNAKVILVSHLGRPKGKFNPDYSLKPVAKRLSELLKKPVIMAEDVIGEDAKVKAAALKEGEVLL 114          
BLAST of FC932475 vs. ExPASy Swiss-Prot
Match: PGK_BACCQ (Phosphoglycerate kinase OS=Bacillus cereus (strain Q1) GN=pgk PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.449e-26
Identity = 63/117 (53.85%), Postives = 86/117 (73.50%), Query Frame = 3
Query:  354 MAKKSVGELSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRPKG-VTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPESGVLL 701
            M KKS+ ++   DLKGK+VF R D NVP+ + + ITD+TRIRAA+PTI++L++ GAKVIL+SHLGRPKG V  +  L P+  RL ELLG  V KAD+  GP  +++VA++ E  VL+
Sbjct:    1 MNKKSIRDV---DLKGKRVFCRVDFNVPMKEGK-ITDETRIRAALPTIQYLVEQGAKVILASHLGRPKGQVVEELRLTPVAARLGELLGKDVKKADEAFGPVAQEMVAAMNEGDVLV 113          
BLAST of FC932475 vs. ExPASy Swiss-Prot
Match: PGK_BACC7 (Phosphoglycerate kinase OS=Bacillus cereus (strain AH187) GN=pgk PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.449e-26
Identity = 63/117 (53.85%), Postives = 86/117 (73.50%), Query Frame = 3
Query:  354 MAKKSVGELSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRPKG-VTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPESGVLL 701
            M KKS+ ++   DLKGK+VF R D NVP+ + + ITD+TRIRAA+PTI++L++ GAKVIL+SHLGRPKG V  +  L P+  RL ELLG  V KAD+  GP  +++VA++ E  VL+
Sbjct:    1 MNKKSIRDV---DLKGKRVFCRVDFNVPMKEGK-ITDETRIRAALPTIQYLVEQGAKVILASHLGRPKGQVVEELRLTPVAARLGELLGKDVKKADEAFGPVAQEMVAAMNEGDVLV 113          
BLAST of FC932475 vs. ExPASy Swiss-Prot
Match: PGK_BACC4 (Phosphoglycerate kinase OS=Bacillus cereus (strain B4264) GN=pgk PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.449e-26
Identity = 63/117 (53.85%), Postives = 86/117 (73.50%), Query Frame = 3
Query:  354 MAKKSVGELSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRPKG-VTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPESGVLL 701
            M KKS+ ++   DLKGK+VF R D NVP+ + + ITD+TRIRAA+PTI++L++ GAKVIL+SHLGRPKG V  +  L P+  RL ELLG  V KAD+  GP  +++VA++ E  VL+
Sbjct:    1 MNKKSIRDV---DLKGKRVFCRVDFNVPMKEGK-ITDETRIRAALPTIQYLVEQGAKVILASHLGRPKGQVVEEMRLTPVAARLGELLGKDVKKADEAFGPVAQEMVAAMNEGDVLV 113          
BLAST of FC932475 vs. ExPASy Swiss-Prot
Match: PGK_PROM5 (Phosphoglycerate kinase OS=Prochlorococcus marinus (strain MIT 9515) GN=pgk PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 7.117e-26
Identity = 63/117 (53.85%), Postives = 80/117 (68.38%), Query Frame = 3
Query:  354 MAKKSVGELSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRPKG-VTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPESGVLL 701
            M+K S+  L  + L+GKKV VR D NVPL+D+  ITDDTRIRAA+PTIK+LI N AKVIL++H GRPKG V  +  L P+  RLSE+LG +V   + CIG E  +   +L    VLL
Sbjct:    1 MSKLSLSSLDKSKLEGKKVLVRVDFNVPLNDDGQITDDTRIRAAIPTIKYLINNSAKVILAAHFGRPKGKVNERMRLTPIAARLSEILGKKVNLTESCIGEEALEKSNNLNNGDVLL 117          
BLAST of FC932475 vs. ExPASy Swiss-Prot
Match: PGK_ANAD2 (Phosphoglycerate kinase OS=Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258) GN=pgk PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 7.117e-26
Identity = 62/111 (55.86%), Postives = 75/111 (67.57%), Query Frame = 3
Query:  378 LSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRPKGV---TPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPESGVLL 701
            +   +L GK+VF+R D NVPLD    +TDD RIRAA+PTI+H IQ  AKVIL+SHLGRPKG      K +L P   RLSELL   V+ ADDC+G  V+KLV  L +  VLL
Sbjct:    6 IDALELAGKRVFIRVDFNVPLDPQGRVTDDARIRAALPTIRHAIQAKAKVILASHLGRPKGKPEDRQKLTLEPAAVRLSELLSQDVILADDCVGDGVKKLVRDLKDGHVLL 116          
The following BLAST results are available for this feature:
BLAST of FC932475 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
PGK_BACC11.434e-2654.70Phosphoglycerate kinase OS=Bacillus cereus (strain... [more]
PGK_ANASK2.446e-2656.76Phosphoglycerate kinase OS=Anaeromyxobacter sp. (s... [more]
PGK_ANADE2.446e-2656.76Phosphoglycerate kinase OS=Anaeromyxobacter dehalo... [more]
PGK_CHLP83.195e-2652.99Phosphoglycerate kinase OS=Chlorobaculum parvum (s... [more]
PGK_THETN5.449e-2654.70Phosphoglycerate kinase OS=Thermoanaerobacter teng... [more]
PGK_BACCQ5.449e-2653.85Phosphoglycerate kinase OS=Bacillus cereus (strain... [more]
PGK_BACC75.449e-2653.85Phosphoglycerate kinase OS=Bacillus cereus (strain... [more]
PGK_BACC45.449e-2653.85Phosphoglycerate kinase OS=Bacillus cereus (strain... [more]
PGK_PROM57.117e-2653.85Phosphoglycerate kinase OS=Prochlorococcus marinus... [more]
PGK_ANAD27.117e-2655.86Phosphoglycerate kinase OS=Anaeromyxobacter dehalo... [more]

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Properties
Property NameValue
Genbank descriptionC34209A05EF PostHarveN Citrus clementina cDNA clone C34209A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932475 ID=FC932475; Name=FC932475; organism=Citrus clementina; type=EST; length=702bp
GGACGTCCACATCTTCTTCATCTTCCCCACACATATTCCTTCCCCATTCT
TCAATCAAACCAAAACCCACTTCCCATTTCCCCACTTTGTCGACAAAGTT
TCAATCTTTTGCGCCTTTACTACGCCCCTCCACTCCCGCCACATCAATGG
CTTCAGCCACCGCTCCCACTACTTTCTCTCTCGTCAAAACCGCCGCAAGT
TCATCCCTTTCTTCCCCACGCGCCTCCTTCCTGCGCATGCCCACTTCAGC
ATCCCGCAGGCTGGGGTTCTCCGCAGCCGACCCGCTGCTGACCTGCCATG
TGGCGTCGAGGCTGAGCTCGATTAAGACGAAGGGCACTCGTGCGGTGGTG
TCGATGGCGAAGAAGAGCGTGGGGGAGTTGAGTGGAGCTGATTTGAAAGG
GAAGAAGGTGTTTGTAAGAGCTGACTTGAATGTGCCTTTGGATGATAATC
AGAACATTACTGATGATACTAGAATCAGAGCTGCTGTTCCCACCATCAAG
CATTTGATTCAAAATGGAGCTAAAGTCATTCTTTCTAGCCACTTGGGAAG
ACCAAAGGGTGTTACTCCGAAATTCAGTTTGGCTCCTCTTGTGCCTCGTC
TTTCTGAACTCCTGGGCATTCAGGTTGTGAAGGCTGATGACTGCATTGGT
CCAGAGGTAGAAAAGCTTGTAGCCTCACTTCCTGAAAGCGGTGTTCTTCT
TC
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