FC932475

Overview
NameFC932475
Unique NameFC932475
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length702
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932475 vs. ExPASy Swiss-Prot
Match: PGK_GEOBB (Phosphoglycerate kinase OS=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) GN=pgk PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.613e-25
Identity = 56/105 (53.33%), Postives = 77/105 (73.33%), Query Frame = 3
Query:  390 DLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRPKGV-TPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPESGVLL 701
            +L GKK+F+R D NVPLDD+QNIT+DTRIRA +P+I + +   AK+IL+SHLGRPKG    K+S+AP   RLS LLG +V  A DCIG EV+ ++ ++    V++
Sbjct:   11 NLSGKKLFMRVDFNVPLDDHQNITEDTRIRAVLPSINYALDQKAKIILASHLGRPKGERKEKYSMAPAAKRLSRLLGKEVKLASDCIGDEVKAMINAMQPGDVIM 115          
BLAST of FC932475 vs. ExPASy Swiss-Prot
Match: PGK_PROM0 (Phosphoglycerate kinase OS=Prochlorococcus marinus (strain MIT 9301) GN=pgk PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.025e-25
Identity = 62/117 (52.99%), Postives = 77/117 (65.81%), Query Frame = 3
Query:  354 MAKKSVGELSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRPKG-VTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPESGVLL 701
            M+K S+  L    L+GKKV VR D NVPL+++  ITDDTRIRAA+PTI++L+ + AKVIL++H GRPKG V  K  L P+  RLSELLG  V   + CIG E      SL    VLL
Sbjct:    1 MSKLSLSSLDKTHLEGKKVLVRVDFNVPLNEDGQITDDTRIRAAIPTIEYLVNHSAKVILAAHFGRPKGQVNEKMRLTPVAARLSELLGQSVALTNSCIGDEAVAKSNSLSNRDVLL 117          
BLAST of FC932475 vs. ExPASy Swiss-Prot
Match: PGK_OCEIH (Phosphoglycerate kinase OS=Oceanobacillus iheyensis GN=pgk PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.025e-25
Identity = 63/117 (53.85%), Postives = 82/117 (70.09%), Query Frame = 3
Query:  354 MAKKSVGELSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRPKG-VTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPESGVLL 701
            M KK++ +L    ++GK+VF R D NVPL D + ITDDTRIRAA+PTI+ L   GAKVIL+SHLGRPKG V  +  L P+  RLS+LLG +V+K D   G EV++ ++ L   GVLL
Sbjct:    1 MNKKTINDLQ---VEGKRVFTRVDFNVPLKDGE-ITDDTRIRAALPTIEQLTAQGAKVILASHLGRPKGTVVEELRLDPVADRLSDLLGKEVLKTDQVYGEEVDQAISELENGGVLL 113          
BLAST of FC932475 vs. ExPASy Swiss-Prot
Match: PGK_EXISA (Phosphoglycerate kinase OS=Exiguobacterium sp. (strain ATCC BAA-1283 / AT1b) GN=pgk PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.025e-25
Identity = 62/117 (52.99%), Postives = 84/117 (71.79%), Query Frame = 3
Query:  354 MAKKSVGELSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRPKG-VTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPESGVLL 701
            M K+S+ ++   D+KGK+VF R D NVPL D   I D+TRI+AA+PTIKHL+  GAK++L+SHLGRPKG   P+FSLAP+  RL+ELLG  V   ++  GP  E+ VA+L E  V++
Sbjct:    1 MNKQSIRDI---DVKGKRVFCRVDFNVPLKDGV-IQDETRIQAALPTIKHLLDGGAKLVLASHLGRPKGEKKPEFSLAPVAKRLAELLGKDVPLVEEAYGPVAEEAVANLSEGDVVV 113          
BLAST of FC932475 vs. ExPASy Swiss-Prot
Match: PGK_PROMP (Phosphoglycerate kinase OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=pgk PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 7.869e-25
Identity = 63/117 (53.85%), Postives = 78/117 (66.67%), Query Frame = 3
Query:  354 MAKKSVGELSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRPKG-VTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPESGVLL 701
            M+K S+  L  + L+GKKV VR D NVPL+D+  ITDDTRIRAA+PTIK+LI N AKVIL++H GRPKG V  K  L P+  RLS++L  +V   + CIG E      SL    VLL
Sbjct:    1 MSKLSLSSLDKSKLEGKKVLVRVDFNVPLNDSGQITDDTRIRAAIPTIKYLINNSAKVILAAHFGRPKGKVNEKMRLTPVAARLSDILEQKVNLTESCIGEEALAKSNSLNNGEVLL 117          
BLAST of FC932475 vs. ExPASy Swiss-Prot
Match: PGK_BACP2 (Phosphoglycerate kinase OS=Bacillus pumilus (strain SAFR-032) GN=pgk PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 7.869e-25
Identity = 63/117 (53.85%), Postives = 83/117 (70.94%), Query Frame = 3
Query:  354 MAKKSVGELSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRPKG-VTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPESGVLL 701
            M KKSV ++   D+KGK VF R D NVP+ D + +TDDTRIRAA+PTI++L   GAKV+L+SHLGRPKG VT +  L P+  RL ELLG +V KAD+  G  V+K ++ L +  VL+
Sbjct:    1 MNKKSVKDI---DVKGKVVFCRVDFNVPMKDGK-VTDDTRIRAALPTIEYLTGQGAKVLLASHLGRPKGQVTEELRLTPVAKRLQELLGQEVKKADEAYGDNVKKQISDLKDGDVLV 113          
BLAST of FC932475 vs. ExPASy Swiss-Prot
Match: PGK_PROM1 (Phosphoglycerate kinase OS=Prochlorococcus marinus (strain NATL1A) GN=pgk PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.028e-24
Identity = 61/117 (52.14%), Postives = 75/117 (64.10%), Query Frame = 3
Query:  354 MAKKSVGELSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRPKG-VTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPESGVLL 701
            M+K+S+  L   DL GK+V VR D NVPL D   ITDDTRIRAA+PTI  L+   A+VILS+H GRPKG V     L  +  RLSELLG  VVK + CIG E +  V ++    V+L
Sbjct:    1 MSKRSLSSLGAEDLCGKRVLVRVDFNVPLGDEGQITDDTRIRAALPTINDLLDKSARVILSAHFGRPKGEVNETMRLTAVAQRLSELLGKTVVKTESCIGAEAKSKVDAMSNGDVVL 117          
BLAST of FC932475 vs. ExPASy Swiss-Prot
Match: PGK_THEP1 (Phosphoglycerate kinase OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=pgk PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.753e-24
Identity = 62/109 (56.88%), Postives = 77/109 (70.64%), Query Frame = 3
Query:  378 LSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRPKG-VTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPESGVLL 701
            +   DLKGK+V +R D NVP+ D   + DDTRIRAA+PTIK+ ++ GAKVIL SHLGRPKG  +P+FSLAP+  RLSELLG +V      +G EV+K V  L E  VLL
Sbjct:    6 IKDVDLKGKRVIMRVDFNVPVKDGV-VQDDTRIRAALPTIKYALEQGAKVILLSHLGRPKGEPSPEFSLAPVAKRLSELLGKEVKFVPAVVGDEVKKAVEELKEGEVLL 113          
BLAST of FC932475 vs. ExPASy Swiss-Prot
Match: PGK_PROMT (Phosphoglycerate kinase OS=Prochlorococcus marinus (strain NATL2A) GN=pgk PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.290e-24
Identity = 61/117 (52.14%), Postives = 75/117 (64.10%), Query Frame = 3
Query:  354 MAKKSVGELSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRPKG-VTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPESGVLL 701
            M+K+S+  L   DL GK+V VR D NVPL D   ITDDTRIRAA+PTI  L+   A+VILS+H GRPKG V     L  +  RLSELLG  VVK + CIG E +  V ++    V+L
Sbjct:    1 MSKRSLSSLGAEDLCGKRVLVRVDFNVPLGDEGLITDDTRIRAALPTINDLLDKSARVILSAHFGRPKGQVNETMRLTAVAQRLSELLGKTVVKTESCIGAEAKSKVDAMSNGDVVL 117          
BLAST of FC932475 vs. ExPASy Swiss-Prot
Match: PGKT_THEMA (Bifunctional PGK/TIM OS=Thermotoga maritima GN=pgk/tpi PE=1 SV=4)

HSP 1 Score: 112.464 bits (280), Expect = 2.290e-24
Identity = 62/105 (59.05%), Postives = 76/105 (72.38%), Query Frame = 3
Query:  390 DLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRPKG-VTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPESGVLL 701
            DLKGK+V +R D NVP+ D   + DDTRIRAA+PTIK+ ++ GAKVIL SHLGRPKG  +P+FSLAP+  RLSELLG +V      +G EV+K V  L E  VLL
Sbjct:   10 DLKGKRVIMRVDFNVPVKDGV-VQDDTRIRAALPTIKYALEQGAKVILLSHLGRPKGEPSPEFSLAPVAKRLSELLGKEVKFVPAVVGDEVKKAVEELKEGEVLL 113          
The following BLAST results are available for this feature:
BLAST of FC932475 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
PGK_GEOBB4.613e-2553.33Phosphoglycerate kinase OS=Geobacter bemidjiensis ... [more]
PGK_PROM06.025e-2552.99Phosphoglycerate kinase OS=Prochlorococcus marinus... [more]
PGK_OCEIH6.025e-2553.85Phosphoglycerate kinase OS=Oceanobacillus iheyensi... [more]
PGK_EXISA6.025e-2552.99Phosphoglycerate kinase OS=Exiguobacterium sp. (st... [more]
PGK_PROMP7.869e-2553.85Phosphoglycerate kinase OS=Prochlorococcus marinus... [more]
PGK_BACP27.869e-2553.85Phosphoglycerate kinase OS=Bacillus pumilus (strai... [more]
PGK_PROM11.028e-2452.14Phosphoglycerate kinase OS=Prochlorococcus marinus... [more]
PGK_THEP11.753e-2456.88Phosphoglycerate kinase OS=Thermotoga petrophila (... [more]
PGK_PROMT2.290e-2452.14Phosphoglycerate kinase OS=Prochlorococcus marinus... [more]
PGKT_THEMA2.290e-2459.05Bifunctional PGK/TIM OS=Thermotoga maritima GN=pgk... [more]

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Properties
Property NameValue
Genbank descriptionC34209A05EF PostHarveN Citrus clementina cDNA clone C34209A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932475 ID=FC932475; Name=FC932475; organism=Citrus clementina; type=EST; length=702bp
GGACGTCCACATCTTCTTCATCTTCCCCACACATATTCCTTCCCCATTCT
TCAATCAAACCAAAACCCACTTCCCATTTCCCCACTTTGTCGACAAAGTT
TCAATCTTTTGCGCCTTTACTACGCCCCTCCACTCCCGCCACATCAATGG
CTTCAGCCACCGCTCCCACTACTTTCTCTCTCGTCAAAACCGCCGCAAGT
TCATCCCTTTCTTCCCCACGCGCCTCCTTCCTGCGCATGCCCACTTCAGC
ATCCCGCAGGCTGGGGTTCTCCGCAGCCGACCCGCTGCTGACCTGCCATG
TGGCGTCGAGGCTGAGCTCGATTAAGACGAAGGGCACTCGTGCGGTGGTG
TCGATGGCGAAGAAGAGCGTGGGGGAGTTGAGTGGAGCTGATTTGAAAGG
GAAGAAGGTGTTTGTAAGAGCTGACTTGAATGTGCCTTTGGATGATAATC
AGAACATTACTGATGATACTAGAATCAGAGCTGCTGTTCCCACCATCAAG
CATTTGATTCAAAATGGAGCTAAAGTCATTCTTTCTAGCCACTTGGGAAG
ACCAAAGGGTGTTACTCCGAAATTCAGTTTGGCTCCTCTTGTGCCTCGTC
TTTCTGAACTCCTGGGCATTCAGGTTGTGAAGGCTGATGACTGCATTGGT
CCAGAGGTAGAAAAGCTTGTAGCCTCACTTCCTGAAAGCGGTGTTCTTCT
TC
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