FC932475

Overview
NameFC932475
Unique NameFC932475
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length702
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932475 vs. ExPASy Swiss-Prot
Match: PGK_DESAA (Phosphoglycerate kinase OS=Desulfatibacillum alkenivorans (strain AK-01) GN=pgk PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.990e-24
Identity = 53/105 (50.48%), Postives = 75/105 (71.43%), Query Frame = 3
Query:  390 DLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRPKG-VTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPESGVLL 701
            D+ GK+V +R D+NVPLD N NITDDTRIRA +P+I + +  GAKVI++SH+GRPKG V P+ S+AP+  R   LL  +V  A D +GPEV+ +V  + +  V++
Sbjct:    8 DISGKRVLIRVDVNVPLDANLNITDDTRIRAVLPSINYALDEGAKVIIASHMGRPKGQVVPELSMAPVAKRFKRLLKKEVELAPDSVGPEVKAMVEKMKDGDVIM 112          
BLAST of FC932475 vs. ExPASy Swiss-Prot
Match: PGK_MICAN (Phosphoglycerate kinase OS=Microcystis aeruginosa (strain NIES-843) GN=pgk PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.905e-24
Identity = 62/118 (52.54%), Postives = 77/118 (65.25%), Query Frame = 3
Query:  354 MAKKSVGELSGADLKGKKVFVRADLNVPLDDNQN-ITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRPKG-VTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPESGVLL 701
            M KK+V  L+ ADL GK+V VR D NVP+D     I+DDTRIRAA+PTI+ LI+ GAKVIL SH+GRP G V     L P+  RLSELLG +V+   DCIG  V   ++ +    V L
Sbjct:    1 MPKKTVANLTEADLAGKRVLVRVDFNVPMDKATGAISDDTRIRAALPTIEDLIKKGAKVILCSHMGRPDGQVKENLRLTPVAKRLSELLGQEVIMCPDCIGEGVTAAISQMSNGQVAL 118          
BLAST of FC932475 vs. ExPASy Swiss-Prot
Match: PGK_HYDS0 (Phosphoglycerate kinase OS=Hydrogenobaculum sp. (strain Y04AAS1) GN=pgk PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.905e-24
Identity = 57/114 (50.00%), Postives = 77/114 (67.54%), Query Frame = 3
Query:  360 KKSVGELSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRPKGVTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPESGVLL 701
            KK++ ++   DLKGK+V VR D NVP+D+  NI DD RIRAA+PTI++L+   A VIL SHLGRPKG   K+SL P+  RLS  +   VV A DCIG ++E +V +     V++
Sbjct:    4 KKTIRDI---DLKGKRVLVRVDFNVPIDNQGNIEDDARIRAAIPTIEYLLDAKAIVILMSHLGRPKGFDEKYSLKPVAKRLSRYIHKDVVMAPDCIGKDMENIVKNAKSEDVIM 114          
BLAST of FC932475 vs. ExPASy Swiss-Prot
Match: PGK_CHLCH (Phosphoglycerate kinase OS=Chlorobium chlorochromatii (strain CaD3) GN=pgk PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.905e-24
Identity = 60/117 (51.28%), Postives = 83/117 (70.94%), Query Frame = 3
Query:  354 MAKKSVGELSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRPKG-VTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPESGVLL 701
            M KK++ +++    +GK+V +R D NVPLD+N+NITDD RI  ++P+I+ +I+ G ++IL SHLGRPKG V  +FSLAP+  RLSELL   V  A DCIG EV + V +L +  VLL
Sbjct:    1 MEKKTLSDIA---TQGKRVLMRVDFNVPLDENKNITDDKRIVESLPSIRKVIEEGGRLILMSHLGRPKGKVNAEFSLAPVAARLSELLDCPVGMAKDCIGTEVMQQVLALQDGEVLL 114          
BLAST of FC932475 vs. ExPASy Swiss-Prot
Match: PGK_ANOFW (Phosphoglycerate kinase OS=Anoxybacillus flavithermus (strain DSM 21510 / WK1) GN=pgk PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.905e-24
Identity = 63/117 (53.85%), Postives = 83/117 (70.94%), Query Frame = 3
Query:  354 MAKKSVGELSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRPKG-VTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPESGVLL 701
            M KK+V ++   D+KGK+VF R D NVP+  N  +TDDTRIRAA+PTI++L++ GAKVIL+SHLGRPKG V  +  L  +  RLSELLG +VVK D+  G  V+  +A + E  VLL
Sbjct:    1 MNKKTVRDI---DVKGKRVFCRVDFNVPMQ-NGVVTDDTRIRAALPTIQYLMEQGAKVILASHLGRPKGKVVEEMRLNAVAERLSELLGKRVVKTDEAYGDTVKAAIAEMNEGDVLL 113          
BLAST of FC932475 vs. ExPASy Swiss-Prot
Match: PGK_EMENI (Phosphoglycerate kinase OS=Emericella nidulans GN=pgkA PE=3 SV=2)

HSP 1 Score: 111.309 bits (277), Expect = 5.101e-24
Identity = 63/120 (52.50%), Postives = 79/120 (65.83%), Query Frame = 3
Query:  354 MAKKSVGELSGADLKGKKVFVRADLNVPLDDNQN--ITDDTRIRAAVPTIKHLIQNGAK-VILSSHLGRPKGV-TPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPESGVLL 701
            M+  S   ++  DLK K+V +R D NVPLD N N  IT+  RI  A+PTIK+ I NGAK VIL SHLGRP G   PK+SL P+VP+L ELLG  V+  +DC+GPEVE+ V       V+L
Sbjct:    1 MSLTSKLSITDVDLKDKRVLIRVDFNVPLDKNDNTTITNPQRIVGALPTIKYAIDNGAKAVILMSHLGRPDGKKNPKYSLKPVVPKLKELLGRDVIFTEDCVGPEVEETVNKASGGQVIL 120          
BLAST of FC932475 vs. ExPASy Swiss-Prot
Match: PGK_BACSU (Phosphoglycerate kinase OS=Bacillus subtilis GN=pgk PE=1 SV=3)

HSP 1 Score: 111.309 bits (277), Expect = 5.101e-24
Identity = 60/117 (51.28%), Postives = 81/117 (69.23%), Query Frame = 3
Query:  354 MAKKSVGELSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRPKG-VTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPESGVLL 701
            M KK++ ++   D+KGK VF R D NVP+ D + +TDDTRIRAA+PTIKHL   GAKV+L+SHLGRPKG V  +  L P+  RL ELLG +V KAD+  G  V+  ++ + +  VL+
Sbjct:    1 MNKKTLKDI---DVKGKVVFCRVDFNVPMKDGE-VTDDTRIRAALPTIKHLADQGAKVLLASHLGRPKGEVVEELRLTPVAARLGELLGKEVKKADEAYGDAVKAQISEMKDGDVLV 113          
BLAST of FC932475 vs. ExPASy Swiss-Prot
Match: PGK_THESQ (Phosphoglycerate kinase OS=Thermotoga sp. (strain RQ2) GN=pgk PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 6.662e-24
Identity = 61/105 (58.10%), Postives = 75/105 (71.43%), Query Frame = 3
Query:  390 DLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRPKG-VTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPESGVLL 701
            DLKGK+V +R D NVP+ D   + DDTRIRAA+PTIK+ ++ GAKVI  SHLGRPKG  +P+FSLAP+  RLSELLG +V      +G EV+K V  L E  VLL
Sbjct:   10 DLKGKRVIMRVDFNVPVKDGV-VQDDTRIRAALPTIKYALEQGAKVIFLSHLGRPKGEPSPEFSLAPVAKRLSELLGKEVKFVPAVVGDEVKKAVEELKEGEVLL 113          
BLAST of FC932475 vs. ExPASy Swiss-Prot
Match: PGK_NEUCR (Phosphoglycerate kinase OS=Neurospora crassa GN=pgk-1 PE=2 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 6.662e-24
Identity = 56/110 (50.91%), Postives = 75/110 (68.18%), Query Frame = 3
Query:  378 LSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAK-VILSSHLGRPKG-VTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPESGVLL 701
            +   DLKGK+V +R D NVPLD  + +T+  RI  A+PTIK+ + +GAK V+L SHLGRP G   PK+SL P+VP L +LLG +V  A DC+GPEVE++V       V+L
Sbjct:    9 IEDVDLKGKRVLIRVDFNVPLDAEKKVTNPQRIAGAIPTIKYALDHGAKAVVLMSHLGRPDGKPNPKYSLKPVVPELEKLLGKKVTFAPDCVGPEVEEIVNKADNGEVIL 118          
BLAST of FC932475 vs. ExPASy Swiss-Prot
Match: PGK_DESAH (Phosphoglycerate kinase OS=Desulfobacterium autotrophicum (strain ATCC 43914 / DSM 3382 / HRM2) GN=pgk PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 6.662e-24
Identity = 56/114 (49.12%), Postives = 76/114 (66.67%), Query Frame = 3
Query:  363 KSVGELSGADLKGKKVFVRADLNVPLDDNQNITDDTRIRAAVPTIKHLIQNGAKVILSSHLGRPKG-VTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPESGVLL 701
            K+V E+   +   K V VR D N+P+D+N NI DD RIRA +P + +L+  GAK++L+SH+GRPKG      SLAP   RLSELLG +VV  DDCIGP+V++ V  L    ++L
Sbjct:    2 KTVREI---EFNSKTVLVRVDYNLPMDENGNIADDNRIRATLPLVNYLVDKGAKIVLASHMGRPKGKPAASLSLAPAAKRLSELLGFEVVFVDDCIGPKVKERVDQLEPGQIIL 112          
The following BLAST results are available for this feature:
BLAST of FC932475 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
PGK_DESAA2.990e-2450.48Phosphoglycerate kinase OS=Desulfatibacillum alken... [more]
PGK_MICAN3.905e-2452.54Phosphoglycerate kinase OS=Microcystis aeruginosa ... [more]
PGK_HYDS03.905e-2450.00Phosphoglycerate kinase OS=Hydrogenobaculum sp. (s... [more]
PGK_CHLCH3.905e-2451.28Phosphoglycerate kinase OS=Chlorobium chlorochroma... [more]
PGK_ANOFW3.905e-2453.85Phosphoglycerate kinase OS=Anoxybacillus flavither... [more]
PGK_EMENI5.101e-2452.50Phosphoglycerate kinase OS=Emericella nidulans GN=... [more]
PGK_BACSU5.101e-2451.28Phosphoglycerate kinase OS=Bacillus subtilis GN=pg... [more]
PGK_THESQ6.662e-2458.10Phosphoglycerate kinase OS=Thermotoga sp. (strain ... [more]
PGK_NEUCR6.662e-2450.91Phosphoglycerate kinase OS=Neurospora crassa GN=pg... [more]
PGK_DESAH6.662e-2449.12Phosphoglycerate kinase OS=Desulfobacterium autotr... [more]

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Properties
Property NameValue
Genbank descriptionC34209A05EF PostHarveN Citrus clementina cDNA clone C34209A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932475 ID=FC932475; Name=FC932475; organism=Citrus clementina; type=EST; length=702bp
GGACGTCCACATCTTCTTCATCTTCCCCACACATATTCCTTCCCCATTCT
TCAATCAAACCAAAACCCACTTCCCATTTCCCCACTTTGTCGACAAAGTT
TCAATCTTTTGCGCCTTTACTACGCCCCTCCACTCCCGCCACATCAATGG
CTTCAGCCACCGCTCCCACTACTTTCTCTCTCGTCAAAACCGCCGCAAGT
TCATCCCTTTCTTCCCCACGCGCCTCCTTCCTGCGCATGCCCACTTCAGC
ATCCCGCAGGCTGGGGTTCTCCGCAGCCGACCCGCTGCTGACCTGCCATG
TGGCGTCGAGGCTGAGCTCGATTAAGACGAAGGGCACTCGTGCGGTGGTG
TCGATGGCGAAGAAGAGCGTGGGGGAGTTGAGTGGAGCTGATTTGAAAGG
GAAGAAGGTGTTTGTAAGAGCTGACTTGAATGTGCCTTTGGATGATAATC
AGAACATTACTGATGATACTAGAATCAGAGCTGCTGTTCCCACCATCAAG
CATTTGATTCAAAATGGAGCTAAAGTCATTCTTTCTAGCCACTTGGGAAG
ACCAAAGGGTGTTACTCCGAAATTCAGTTTGGCTCCTCTTGTGCCTCGTC
TTTCTGAACTCCTGGGCATTCAGGTTGTGAAGGCTGATGACTGCATTGGT
CCAGAGGTAGAAAAGCTTGTAGCCTCACTTCCTGAAAGCGGTGTTCTTCT
TC
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