FC932478

Overview
NameFC932478
Unique NameFC932478
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length710
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11083 contig Ccv1_Contig11083:244..953. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932478 vs. ExPASy Swiss-Prot
Match: HFB4C_ORYSJ (Heat stress transcription factor B-4c OS=Oryza sativa subsp. japonica GN=HSFB4C PE=2 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 4.123e-37
Identity = 71/102 (69.61%), Postives = 84/102 (82.35%), Query Frame = 1
Query:   79 QRSMPTPFLTKTYQLVDDQAIDDVISWNKDG-TTFVVWNPTIFARDLLPRYFKHNNFSSFVRQLNTYGFKKVVPDRWEFSNDCFHRGEQQLLREIQRRKIQS 381
            Q+++P PFLTKTYQLVDD A D ++SW  D  +TFVVW P  FARD+LP YFKHNNFSSFVRQLNTYGF+KVVP+RWEF+N+ F +GE+QLL EI RRK  S
Sbjct:   18 QKAVPAPFLTKTYQLVDDPATDHIVSWGDDRVSTFVVWRPPEFARDILPNYFKHNNFSSFVRQLNTYGFRKVVPERWEFANEFFRKGEKQLLTEIHRRKTSS 119          
BLAST of FC932478 vs. ExPASy Swiss-Prot
Match: HSFB1_ORYSJ (Heat stress transcription factor B-1 OS=Oryza sativa subsp. japonica GN=HSFB1 PE=2 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 7.033e-37
Identity = 83/195 (42.56%), Postives = 111/195 (56.92%), Query Frame = 1
Query:   91 PTPFLTKTYQLVDDQAIDDVISWNKDGTTFVVWNPTIFARDLLPRYFKHNNFSSFVRQLNTYGFKKVVPDRWEFSNDCFHRGEQQLLREIQRRKIQSXXXXXXXXXXXXXXXXXXKPIVSP-----SNSGEEQVIXXXXXXXXXXXXVTAHTCGGGHTCAEIVEENDKLRKENAQLNKQVAEMKNLCKHIFSLMS 660
            P PFLTKT Q+V++ A D+VISW K+G +FVVW P  FARDLLP +FKH NFSSFVRQLNTYGF+KVVPDRWEF+N  F RGEQ LL  I+RRK  +                   P + P     ++SG ++                + +       A+I  EN++LRK+N  L  ++A  +  C+ +   +S
Sbjct:   28 PAPFLTKTNQMVEESATDEVISWGKEGRSFVVWKPVEFARDLLPLHFKHCNFSSFVRQLNTYGFRKVVPDRWEFANGNFRRGEQGLLSGIRRRKATTPQSSKSCGSGVNVAFPPPLPPLPPEPSATTSSGNDR----------------SSSSASSPPRADITSENEQLRKDNQTLTMELARARRHCEELLGFLS 206          
BLAST of FC932478 vs. ExPASy Swiss-Prot
Match: HFB4A_ORYSJ (Putative heat stress transcription factor B-4a OS=Oryza sativa subsp. japonica GN=HSFB4A PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.915e-34
Identity = 68/100 (68.00%), Postives = 80/100 (80.00%), Query Frame = 1
Query:   88 MPTPFLTKTYQLVDDQAIDDVISWNKD-----GTTFVVWNPTIFARDLLPRYFKHNNFSSFVRQLNTYGFKKVVPDRWEFSNDCFHRGEQQLLREIQRRK 372
            +P PFLTKTYQLVDD A D V+SW  D      ++FVVW P  FARD+LP YFKH+NFSSFVRQLNTYGF+KVVP+RWEF+N+ F +GE+QLL EI RRK
Sbjct:   22 VPAPFLTKTYQLVDDPATDHVVSWEDDDGGESASSFVVWRPPEFARDILPNYFKHSNFSSFVRQLNTYGFRKVVPERWEFANEFFRKGEKQLLCEIHRRK 121          
BLAST of FC932478 vs. ExPASy Swiss-Prot
Match: HFA1A_ARATH (Heat stress transcription factor A-1a OS=Arabidopsis thaliana GN=HSFA1A PE=1 SV=2)

HSP 1 Score: 142.51 bits (358), Expect = 2.118e-33
Identity = 61/96 (63.54%), Postives = 80/96 (83.33%), Query Frame = 1
Query:   85 SMPTPFLTKTYQLVDDQAIDDVISWNKDGTTFVVWNPTIFARDLLPRYFKHNNFSSFVRQLNTYGFKKVVPDRWEFSNDCFHRGEQQLLREIQRRK 372
            S+P PFL+KTY +V+D A D ++SW+    +F+VW+P  F+RDLLP+YFKHNNFSSFVRQLNTYGF+KV PDRWEF+N+ F RG++ LL++I RRK
Sbjct:   48 SLPPPFLSKTYDMVEDPATDAIVSWSPTNNSFIVWDPPEFSRDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLKKISRRK 143          
BLAST of FC932478 vs. ExPASy Swiss-Prot
Match: HSFA1_ORYSJ (Heat stress transcription factor A-1 OS=Oryza sativa subsp. japonica GN=HSFA1 PE=2 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 2.766e-33
Identity = 69/123 (56.10%), Postives = 83/123 (67.48%), Query Frame = 1
Query:    4 MTPPPTAMEQNGXXXXXXXXXXXXXQRSMPTPFLTKTYQLVDDQAIDDVISWNKDGTTFVVWNPTIFARDLLPRYFKHNNFSSFVRQLNTYGFKKVVPDRWEFSNDCFHRGEQQLLREIQRRK 372
            + PPP A   NG               + P PFL KTY++VDD A D V+SW     +FVVWN   FARDLLP+YFKH+NFSSFVRQLNTYGF+KV PDRWEF+N+ F RG++ LL+ I RRK
Sbjct:   19 VAPPPGAAVSNGVA-------------TAPPPFLMKTYEMVDDPATDAVVSWGPGNNSFVVWNTPEFARDLLPKYFKHSNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLKTINRRK 128          
BLAST of FC932478 vs. ExPASy Swiss-Prot
Match: HFA2C_ORYSJ (Heat stress transcription factor A-2c OS=Oryza sativa subsp. japonica GN=HSFA2C PE=2 SV=2)

HSP 1 Score: 140.969 bits (354), Expect = 6.161e-33
Identity = 64/94 (68.09%), Postives = 78/94 (82.98%), Query Frame = 1
Query:   91 PTPFLTKTYQLVDDQAIDDVISWNKDGTTFVVWNPTIFARDLLPRYFKHNNFSSFVRQLNTYGFKKVVPDRWEFSNDCFHRGEQQLLREIQRRK 372
            P PFLTKTY LV+D A D V+SW++ G +FVVW+P +FA  LLPR FKHNNFSSFVRQLNTYGF+KV PDRWEF+N+ F RG++ LL+ I+RRK
Sbjct:   40 PPPFLTKTYDLVEDPATDGVVSWSRAGNSFVVWDPHVFADLLLPRLFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQRHLLKTIKRRK 133          
BLAST of FC932478 vs. ExPASy Swiss-Prot
Match: HSF8_SOLPE (Heat shock factor protein HSF8 OS=Solanum peruvianum GN=HSF8 PE=2 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 8.047e-33
Identity = 61/94 (64.89%), Postives = 76/94 (80.85%), Query Frame = 1
Query:   91 PTPFLTKTYQLVDDQAIDDVISWNKDGTTFVVWNPTIFARDLLPRYFKHNNFSSFVRQLNTYGFKKVVPDRWEFSNDCFHRGEQQLLREIQRRK 372
            P PFL KTY +VDD + D ++SW+    +FVVW+P  FA+DLLP+YFKHNNFSSFVRQLNTYGF+KV PDRWEF+N+ F RG++ LL+ I RRK
Sbjct:   39 PPPFLVKTYDMVDDPSTDKIVSWSPTNNSFVVWDPPEFAKDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLKSISRRK 132          
BLAST of FC932478 vs. ExPASy Swiss-Prot
Match: HSF8_SOLLC (Heat shock factor protein HSF8 OS=Solanum lycopersicum GN=HSF8 PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 8.047e-33
Identity = 61/94 (64.89%), Postives = 76/94 (80.85%), Query Frame = 1
Query:   91 PTPFLTKTYQLVDDQAIDDVISWNKDGTTFVVWNPTIFARDLLPRYFKHNNFSSFVRQLNTYGFKKVVPDRWEFSNDCFHRGEQQLLREIQRRK 372
            P PFL KTY +VDD + D ++SW+    +FVVW+P  FA+DLLP+YFKHNNFSSFVRQLNTYGF+KV PDRWEF+N+ F RG++ LL+ I RRK
Sbjct:   37 PPPFLVKTYDMVDDPSTDKIVSWSPTNNSFVVWDPPEFAKDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLKSISRRK 130          
BLAST of FC932478 vs. ExPASy Swiss-Prot
Match: HFA4D_ORYSJ (Heat stress transcription factor A-4d OS=Oryza sativa subsp. japonica GN=HSFA4D PE=1 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.341e-32
Identity = 60/94 (63.83%), Postives = 75/94 (79.79%), Query Frame = 1
Query:   91 PTPFLTKTYQLVDDQAIDDVISWNKDGTTFVVWNPTIFARDLLPRYFKHNNFSSFVRQLNTYGFKKVVPDRWEFSNDCFHRGEQQLLREIQRRK 372
            P PFL KTY++V+D A + V+SW   G +FVVWNP  F+RDLLP+YFKHNNFSSF+RQLNTYGF+K+ P+RWEF+N+ F RG   LL+ I RRK
Sbjct:   18 PPPFLIKTYEMVEDAATNHVVSWGPGGASFVVWNPLDFSRDLLPKYFKHNNFSSFIRQLNTYGFRKIDPERWEFANEDFIRGHTHLLKNIHRRK 111          
BLAST of FC932478 vs. ExPASy Swiss-Prot
Match: HSFB3_ARATH (Heat stress transcription factor B-3 OS=Arabidopsis thaliana GN=HSFB3 PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 3.058e-32
Identity = 77/189 (40.74%), Postives = 101/189 (53.44%), Query Frame = 1
Query:   91 PTPFLTKTYQLVDDQAIDDVISWNKDGTTFVVWNPTIFARDLLPRYFKHNNFSSFVRQLNTYGFKKVVPDRWEFSNDCFHRGEQQLLREIQRRKIQSXXXXXXXXXXXXXXXXXXKPIVSPSNSGEEQVIXXXXXXXXXXXXVTAHTCGGGHTCAEIVEENDKLRKENAQLNKQVAEMKNLCKHIFSLM 657
            P PFL KTY++V+D   D VISWN+ GT FVVW P  FARDLLP  FKH NFSSFVRQLNTYGF+KV   RWEFSN+ F +G+++L+  I+RRK Q                    P  +  N    Q I             T+           +++EN  L+ EN  L+ ++ + K  CK +  L+
Sbjct:   38 PPPFLVKTYKVVEDPTTDGVISWNEYGTGFVVWQPAEFARDLLPTLFKHCNFSSFVRQLNTYGFRKVTTIRWEFSNEMFRKGQRELMSNIRRRKSQHWSHNKSNHQVV--------PTTTMVNQEGHQRIGIDHHHEDQQSSATS----SSFVYTALLDENKCLKNENELLSCELGKTKKKCKQLMELV 214          
The following BLAST results are available for this feature:
BLAST of FC932478 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 68
Match NameE-valueIdentityDescription
HFB4C_ORYSJ4.123e-3769.61Heat stress transcription factor B-4c OS=Oryza sat... [more]
HSFB1_ORYSJ7.033e-3742.56Heat stress transcription factor B-1 OS=Oryza sati... [more]
HFB4A_ORYSJ1.915e-3468.00Putative heat stress transcription factor B-4a OS=... [more]
HFA1A_ARATH2.118e-3363.54Heat stress transcription factor A-1a OS=Arabidops... [more]
HSFA1_ORYSJ2.766e-3356.10Heat stress transcription factor A-1 OS=Oryza sati... [more]
HFA2C_ORYSJ6.161e-3368.09Heat stress transcription factor A-2c OS=Oryza sat... [more]
HSF8_SOLPE8.047e-3364.89Heat shock factor protein HSF8 OS=Solanum peruvian... [more]
HSF8_SOLLC8.047e-3364.89Heat shock factor protein HSF8 OS=Solanum lycopers... [more]
HFA4D_ORYSJ2.341e-3263.83Heat stress transcription factor A-4d OS=Oryza sat... [more]
HSFB3_ARATH3.058e-3240.74Heat stress transcription factor B-3 OS=Arabidopsi... [more]

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Properties
Property NameValue
Genbank descriptionC34209A08EF PostHarveN Citrus clementina cDNA clone C34209A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932478 ID=FC932478; Name=FC932478; organism=Citrus clementina; type=EST; length=710bp
CATATGACTCCGCCTCCGACGGCAATGGAGCAGAACGGAGACTCTACACC
GTCGCCGACGACTACGGCCAGCGACTCTCAACGTTCTATGCCGACGCCGT
TTTTGACGAAAACTTATCAGTTAGTTGACGATCAGGCGATTGACGACGTT
ATTTCGTGGAACAAAGACGGAACTACGTTCGTCGTCTGGAATCCTACCAT
TTTCGCTAGAGATTTGCTTCCTAGATACTTCAAACACAACAATTTTTCTA
GCTTCGTTCGTCAACTCAACACTTATGGGTTTAAAAAAGTTGTACCCGAT
CGGTGGGAGTTTTCTAACGACTGCTTCCACCGTGGCGAGCAACAGCTTCT
GCGTGAAATTCAGCGACGGAAGATTCAATCAGCGGCGACGGCGCAGCCTG
TCACCGTTGCGGTGCCGGCCGTGGTTCCGGTGGCGAAACCGATTGTGTCG
CCGTCGAATTCGGGGGAAGAGCAGGTGATTTCGTCGAACTCATCACCGGC
AGCGGGAGCGGCCGGTGTAACCGCTCACACGTGTGGAGGTGGTCACACGT
GTGCGGAGATAGTTGAAGAGAACGATAAATTGAGGAAGGAGAATGCTCAG
CTGAACAAGCAGGTGGCGGAAATGAAGAATCTCTGTAAACATATATTTAG
TTTGATGTCTAATTCACCCGTGGTGGTGNTTGGTGGTGGTGACGGCGGCG
GTCAGGCGGC
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