FC932478

Overview
NameFC932478
Unique NameFC932478
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length710
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11083 contig Ccv1_Contig11083:244..953. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932478 vs. ExPASy Swiss-Prot
Match: HFA4A_ARATH (Heat stress transcription factor A-4a OS=Arabidopsis thaliana GN=HSFA4A PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 3.058e-32
Identity = 59/96 (61.46%), Postives = 79/96 (82.29%), Query Frame = 1
Query:   85 SMPTPFLTKTYQLVDDQAIDDVISWNKDGTTFVVWNPTIFARDLLPRYFKHNNFSSFVRQLNTYGFKKVVPDRWEFSNDCFHRGEQQLLREIQRRK 372
            S+P PFLTKTY++VDD + D ++SW++   +F+VWNP  F+RDLLPR+FKHNNFSSF+RQLNTYGF+K  P++WEF+ND F RG+  L++ I RRK
Sbjct:   12 SLP-PFLTKTYEMVDDSSSDSIVSWSQSNKSFIVWNPPEFSRDLLPRFFKHNNFSSFIRQLNTYGFRKADPEQWEFANDDFVRGQPHLMKNIHRRK 106          
BLAST of FC932478 vs. ExPASy Swiss-Prot
Match: HFA2E_ORYSJ (Heat stress transcription factor A-2e OS=Oryza sativa subsp. japonica GN=HSFA2E PE=2 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.994e-32
Identity = 61/94 (64.89%), Postives = 75/94 (79.79%), Query Frame = 1
Query:   91 PTPFLTKTYQLVDDQAIDDVISWNKDGTTFVVWNPTIFARDLLPRYFKHNNFSSFVRQLNTYGFKKVVPDRWEFSNDCFHRGEQQLLREIQRRK 372
            P PFLTKTY +VDD   D V+SW+    +FVVW+P +F   LLPRYFKHNNFSSFVRQLNTYGF+KV PD+WEF+N+ F RG++ LL+ I+RRK
Sbjct:   36 PPPFLTKTYDMVDDPTTDAVVSWSATNNSFVVWDPHLFGNVLLPRYFKHNNFSSFVRQLNTYGFRKVDPDKWEFANEGFLRGQKHLLKSIKRRK 129          
BLAST of FC932478 vs. ExPASy Swiss-Prot
Match: HFA2D_ORYSJ (Heat stress transcription factor A-2d OS=Oryza sativa subsp. japonica GN=HSFA2D PE=2 SV=2)

HSP 1 Score: 138.272 bits (347), Expect = 3.994e-32
Identity = 61/94 (64.89%), Postives = 77/94 (81.91%), Query Frame = 1
Query:   91 PTPFLTKTYQLVDDQAIDDVISWNKDGTTFVVWNPTIFARDLLPRYFKHNNFSSFVRQLNTYGFKKVVPDRWEFSNDCFHRGEQQLLREIQRRK 372
            P PFLTKT+ LV D A D V+SW + G++FVVW+P +FA   LPR+FKHNNFSSFVRQLNTYGF+K+ PDRWEF+ND F RG++ LL+ I+RR+
Sbjct:   35 PPPFLTKTFDLVADPATDGVVSWGRAGSSFVVWDPHVFAAVFLPRFFKHNNFSSFVRQLNTYGFRKIDPDRWEFANDGFLRGQRHLLKMIKRRR 128          
BLAST of FC932478 vs. ExPASy Swiss-Prot
Match: HFA6B_ARATH (Heat stress transcription factor A-6b OS=Arabidopsis thaliana GN=HSFA6b PE=2 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 6.812e-32
Identity = 61/96 (63.54%), Postives = 77/96 (80.21%), Query Frame = 1
Query:   85 SMPTPFLTKTYQLVDDQAIDDVISWNKDGTTFVVWNPTIFARDLLPRYFKHNNFSSFVRQLNTYGFKKVVPDRWEFSNDCFHRGEQQLLREIQRRK 372
            S P PFLTKTY LV+D   + V+SW+K   +F+VW+P  F+  LLPR+FKHNNFSSFVRQLNTYGF+KV PDRWEF+N+ F RG++ LL+ I+RRK
Sbjct:   57 SGPPPFLTKTYDLVEDSRTNHVVSWSKSNNSFIVWDPQAFSVTLLPRFFKHNNFSSFVRQLNTYGFRKVNPDRWEFANEGFLRGQKHLLKNIRRRK 152          
BLAST of FC932478 vs. ExPASy Swiss-Prot
Match: HFA1D_ARATH (Heat stress transcription factor A-1d OS=Arabidopsis thaliana GN=HSFA1D PE=2 SV=2)

HSP 1 Score: 137.502 bits (345), Expect = 6.812e-32
Identity = 60/94 (63.83%), Postives = 75/94 (79.79%), Query Frame = 1
Query:   91 PTPFLTKTYQLVDDQAIDDVISWNKDGTTFVVWNPTIFARDLLPRYFKHNNFSSFVRQLNTYGFKKVVPDRWEFSNDCFHRGEQQLLREIQRRK 372
            P PFL+KTY +VDD   D ++SW+ +  +F+VW P  FARDLLP+ FKHNNFSSFVRQLNTYGF+KV PDRWEF+N+ F RG++ LL+ I RRK
Sbjct:   35 PPPFLSKTYDMVDDHNTDSIVSWSANNNSFIVWKPPEFARDLLPKNFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLQSITRRK 128          
BLAST of FC932478 vs. ExPASy Swiss-Prot
Match: HFA2B_ORYSJ (Heat stress transcription factor A-2b OS=Oryza sativa subsp. japonica GN=HSFA2B PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.518e-31
Identity = 61/94 (64.89%), Postives = 74/94 (78.72%), Query Frame = 1
Query:   91 PTPFLTKTYQLVDDQAIDDVISWNKDGTTFVVWNPTIFARDLLPRYFKHNNFSSFVRQLNTYGFKKVVPDRWEFSNDCFHRGEQQLLREIQRRK 372
            P PFLTKTY +VDD   D  +SW+    +FVVW+P  FA  LLPR+FKHNNFSSFVRQLNTYGF+KV PDRWEF+N+ F RG++ LL+ I+RRK
Sbjct:   50 PPPFLTKTYDMVDDAGTDAAVSWSATSNSFVVWDPHAFATVLLPRFFKHNNFSSFVRQLNTYGFRKVDPDRWEFANENFLRGQRHLLKNIKRRK 143          
BLAST of FC932478 vs. ExPASy Swiss-Prot
Match: HFA1E_ARATH (Heat stress transcription factor A-1e OS=Arabidopsis thaliana GN=HSFA1E PE=2 SV=2)

HSP 1 Score: 136.346 bits (342), Expect = 1.518e-31
Identity = 60/92 (65.22%), Postives = 74/92 (80.43%), Query Frame = 1
Query:   97 PFLTKTYQLVDDQAIDDVISWNKDGTTFVVWNPTIFARDLLPRYFKHNNFSSFVRQLNTYGFKKVVPDRWEFSNDCFHRGEQQLLREIQRRK 372
            PFL+KTY +VDD   DDV+SW+    +FVVWN   FA+  LP+YFKHNNFSSFVRQLNTYGF+KV PDRWEF+N+ F RG++Q+L+ I RRK
Sbjct:   23 PFLSKTYDMVDDPLTDDVVSWSSGNNSFVVWNVPEFAKQFLPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKQILKSIVRRK 114          
BLAST of FC932478 vs. ExPASy Swiss-Prot
Match: HFA2A_ORYSJ (Heat stress transcription factor A-2a OS=Oryza sativa subsp. japonica GN=HSFA2A PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 9.837e-31
Identity = 61/94 (64.89%), Postives = 75/94 (79.79%), Query Frame = 1
Query:   91 PTPFLTKTYQLVDDQAIDDVISWNKDGTTFVVWNPTIFARDLLPRYFKHNNFSSFVRQLNTYGFKKVVPDRWEFSNDCFHRGEQQLLREIQRRK 372
            P PFL KTY++VDD   D VISW   G +FVVW+   FA  LLPRYFKH+NFSSFVRQLNTYGF+KV PDRWEF+N+ F RG+++LL+ I+RR+
Sbjct:   51 PPPFLCKTYEVVDDPGTDTVISWGFAGNSFVVWDANAFAAVLLPRYFKHSNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGKKELLKTIKRRR 144          
BLAST of FC932478 vs. ExPASy Swiss-Prot
Match: HFA6A_ARATH (Heat stress transcription factor A-6a OS=Arabidopsis thaliana GN=HSFA6A PE=2 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 3.738e-30
Identity = 57/97 (58.76%), Postives = 76/97 (78.35%), Query Frame = 1
Query:   91 PTPFLTKTYQLVDDQAIDDVISWNKDGTTFVVWNPTIFARDLLPRYFKHNNFSSFVRQLNTYGFKKVVPDRWEFSNDCFHRGEQQLLREIQRRKIQS 381
            PT FLTKTY +V+D + ++++SW++D  +F+VW P  FA   LPR FKHNNFSSFVRQLNTYGFKK+  +RWEF+N+ F +GE+ LL+ I+RRK  S
Sbjct:   17 PTAFLTKTYNIVEDSSTNNIVSWSRDNNSFIVWEPETFALICLPRCFKHNNFSSFVRQLNTYGFKKIDTERWEFANEHFLKGERHLLKNIKRRKTSS 113          
BLAST of FC932478 vs. ExPASy Swiss-Prot
Match: HSFA5_ARATH (Heat stress transcription factor A-5 OS=Arabidopsis thaliana GN=HSFA5 PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 6.376e-30
Identity = 55/94 (58.51%), Postives = 73/94 (77.66%), Query Frame = 1
Query:   91 PTPFLTKTYQLVDDQAIDDVISWNKDGTTFVVWNPTIFARDLLPRYFKHNNFSSFVRQLNTYGFKKVVPDRWEFSNDCFHRGEQQLLREIQRRK 372
            P PFL KTY++VDD + D ++SW+ +  +F+VWN   F+R LLP YFKHNNFSSF+RQLNTYGF+K+ P+RWEF ND F + ++ LL+ I RRK
Sbjct:   21 PAPFLVKTYEMVDDSSTDQIVSWSANNNSFIVWNHAEFSRLLLPTYFKHNNFSSFIRQLNTYGFRKIDPERWEFLNDDFIKDQKHLLKNIHRRK 114          
The following BLAST results are available for this feature:
BLAST of FC932478 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 68
Match NameE-valueIdentityDescription
HFA4A_ARATH3.058e-3261.46Heat stress transcription factor A-4a OS=Arabidops... [more]
HFA2E_ORYSJ3.994e-3264.89Heat stress transcription factor A-2e OS=Oryza sat... [more]
HFA2D_ORYSJ3.994e-3264.89Heat stress transcription factor A-2d OS=Oryza sat... [more]
HFA6B_ARATH6.812e-3263.54Heat stress transcription factor A-6b OS=Arabidops... [more]
HFA1D_ARATH6.812e-3263.83Heat stress transcription factor A-1d OS=Arabidops... [more]
HFA2B_ORYSJ1.518e-3164.89Heat stress transcription factor A-2b OS=Oryza sat... [more]
HFA1E_ARATH1.518e-3165.22Heat stress transcription factor A-1e OS=Arabidops... [more]
HFA2A_ORYSJ9.837e-3164.89Heat stress transcription factor A-2a OS=Oryza sat... [more]
HFA6A_ARATH3.738e-3058.76Heat stress transcription factor A-6a OS=Arabidops... [more]
HSFA5_ARATH6.376e-3058.51Heat stress transcription factor A-5 OS=Arabidopsi... [more]

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Properties
Property NameValue
Genbank descriptionC34209A08EF PostHarveN Citrus clementina cDNA clone C34209A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932478 ID=FC932478; Name=FC932478; organism=Citrus clementina; type=EST; length=710bp
CATATGACTCCGCCTCCGACGGCAATGGAGCAGAACGGAGACTCTACACC
GTCGCCGACGACTACGGCCAGCGACTCTCAACGTTCTATGCCGACGCCGT
TTTTGACGAAAACTTATCAGTTAGTTGACGATCAGGCGATTGACGACGTT
ATTTCGTGGAACAAAGACGGAACTACGTTCGTCGTCTGGAATCCTACCAT
TTTCGCTAGAGATTTGCTTCCTAGATACTTCAAACACAACAATTTTTCTA
GCTTCGTTCGTCAACTCAACACTTATGGGTTTAAAAAAGTTGTACCCGAT
CGGTGGGAGTTTTCTAACGACTGCTTCCACCGTGGCGAGCAACAGCTTCT
GCGTGAAATTCAGCGACGGAAGATTCAATCAGCGGCGACGGCGCAGCCTG
TCACCGTTGCGGTGCCGGCCGTGGTTCCGGTGGCGAAACCGATTGTGTCG
CCGTCGAATTCGGGGGAAGAGCAGGTGATTTCGTCGAACTCATCACCGGC
AGCGGGAGCGGCCGGTGTAACCGCTCACACGTGTGGAGGTGGTCACACGT
GTGCGGAGATAGTTGAAGAGAACGATAAATTGAGGAAGGAGAATGCTCAG
CTGAACAAGCAGGTGGCGGAAATGAAGAATCTCTGTAAACATATATTTAG
TTTGATGTCTAATTCACCCGTGGTGGTGNTTGGTGGTGGTGACGGCGGCG
GTCAGGCGGC
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