FC932480

Overview
NameFC932480
Unique NameFC932480
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length714
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932480 vs. ExPASy Swiss-Prot
Match: CALM_APLCA (Calmodulin OS=Aplysia californica GN=CAM PE=2 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.571e-12
Identity = 45/137 (32.85%), Postives = 74/137 (54.01%), Query Frame = 3
Query:  294 MSADISLDMNYELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGYIPLEALISRVGNSSCEPACEPELKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKTGMG 704
            M+  ++ +   E  +A  L D+D DG +   EL  ++  LG +P T+ E++ M++EVD +G+G I     ++ +     +   E E++E F  FD D +G I+A EL  V T LG++L T ++   MI   D  G G
Sbjct:    1 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNP-TEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKL-TDEEVDEMIREADIDGDG 135          
BLAST of FC932480 vs. ExPASy Swiss-Prot
Match: CALMA_HALRO (Calmodulin-A OS=Halocynthia roretzi PE=1 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.571e-12
Identity = 45/137 (32.85%), Postives = 74/137 (54.01%), Query Frame = 3
Query:  294 MSADISLDMNYELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGYIPLEALISRVGNSSCEPACEPELKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKTGMG 704
            M+  ++ +   E  +A  L D+D DG +   EL  ++  LG +P T+ E++ M++EVD +G+G I     ++ +     +   E E++E F  FD D +G I+A EL  V T LG++L T ++   MI   D  G G
Sbjct:    1 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNP-TEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKL-TDEEVDEMIREADIDGDG 135          
BLAST of FC932480 vs. ExPASy Swiss-Prot
Match: CALM1_BRALA (Calmodulin-1 OS=Branchiostoma lanceolatum PE=2 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.571e-12
Identity = 45/137 (32.85%), Postives = 74/137 (54.01%), Query Frame = 3
Query:  294 MSADISLDMNYELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGYIPLEALISRVGNSSCEPACEPELKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKTGMG 704
            M+  ++ +   E  +A  L D+D DG +   EL  ++  LG +P T+ E++ M++EVD +G+G I     ++ +     +   E E++E F  FD D +G I+A EL  V T LG++L T ++   MI   D  G G
Sbjct:    1 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNP-TEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKL-TDEEVDEMIREADIDGDG 135          
BLAST of FC932480 vs. ExPASy Swiss-Prot
Match: CALM1_BRAFL (Calmodulin-1 OS=Branchiostoma floridae PE=2 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.571e-12
Identity = 45/137 (32.85%), Postives = 74/137 (54.01%), Query Frame = 3
Query:  294 MSADISLDMNYELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGYIPLEALISRVGNSSCEPACEPELKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKTGMG 704
            M+  ++ +   E  +A  L D+D DG +   EL  ++  LG +P T+ E++ M++EVD +G+G I     ++ +     +   E E++E F  FD D +G I+A EL  V T LG++L T ++   MI   D  G G
Sbjct:    1 MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNP-TEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKL-TDEEVDEMIREADIDGDG 135          
BLAST of FC932480 vs. ExPASy Swiss-Prot
Match: CML1_ORYSI (Calmodulin-like protein 1 OS=Oryza sativa subsp. indica GN=CML1 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.052e-12
Identity = 46/137 (33.58%), Postives = 72/137 (52.55%), Query Frame = 3
Query:  294 MSADISLDMNYELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGYIPLEALISRVGNSSCEPACEPELKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKTGMG 704
            M+  +S +   E  +A  L D+D DG +   EL  ++  LG +P T+ E++ M+SEVD + +G I  +  +  +     +   E ELKE F  FD D +G I+A EL  V   +G+ L T ++   MI+  D  G G
Sbjct:    1 MADQLSEEQIVEFREAFSLFDKDGDGSITTKELGTVMRSLGQNP-TEAELQDMISEVDADSNGNIEFKEFLGLMARKLRDKDSEEELKEAFRVFDKDQNGFISAAELRHVMANIGERL-TDEEVGEMISEADVDGDG 135          
BLAST of FC932480 vs. ExPASy Swiss-Prot
Match: CALM_STRIE (Calmodulin OS=Strongylocentrotus intermedius PE=2 SV=3)

HSP 1 Score: 72.7886 bits (177), Expect = 2.052e-12
Identity = 44/126 (34.92%), Postives = 69/126 (54.76%), Query Frame = 3
Query:  327 ELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGYIPLEALISRVGNSSCEPACEPELKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKTGMG 704
            E  +A  L D+D DG +   EL  ++  LG +P T+ E++ M++EVD +G+G I     ++ +     +   E E++E F  FD D +G I+A EL  V T LG++L T ++   MI   D  G G
Sbjct:   19 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNP-TEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKL-TDEEVDEMIREADIDGDG 142          
BLAST of FC932480 vs. ExPASy Swiss-Prot
Match: CALM_NEUCR (Calmodulin OS=Neurospora crassa GN=cmd-1 PE=1 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 2.052e-12
Identity = 43/137 (31.39%), Postives = 75/137 (54.74%), Query Frame = 3
Query:  294 MSADISLDMNYELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGYIPLEALISRVGNSSCEPACEPELKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKTGMG 704
            M+  ++ +   E  +A  L D+D DG +   EL  ++  LG + P++ E++ M++EVD + +G I     ++ +     +   E E++E F  FD D++G I+A EL  V T +G++L T D+   MI   D+ G G
Sbjct:    1 MADSLTEEQVSEFKEAFSLFDKDGDGQITTKELGTVMRSLGQN-PSESELQDMINEVDADNNGTIDFPEFLTMMARKMKDTDSEEEIREAFKVFDRDNNGFISAAELRHVMTSIGEKL-TDDEVDEMIREADQDGDG 135          
BLAST of FC932480 vs. ExPASy Swiss-Prot
Match: CALM_MAGGR (Calmodulin OS=Magnaporthe grisea GN=CMD1 PE=3 SV=4)

HSP 1 Score: 72.7886 bits (177), Expect = 2.052e-12
Identity = 43/137 (31.39%), Postives = 75/137 (54.74%), Query Frame = 3
Query:  294 MSADISLDMNYELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGYIPLEALISRVGNSSCEPACEPELKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKTGMG 704
            M+  ++ +   E  +A  L D+D DG +   EL  ++  LG + P++ E++ M++EVD + +G I     ++ +     +   E E++E F  FD D++G I+A EL  V T +G++L T D+   MI   D+ G G
Sbjct:    1 MADSLTEEQVSEFKEAFSLFDKDGDGQITTKELGTVMRSLGQN-PSESELQDMINEVDADNNGTIDFPEFLTMMARKMKDTDSEEEIREAFKVFDRDNNGFISAAELRHVMTSIGEKL-TDDEVDEMIREADQDGDG 135          
BLAST of FC932480 vs. ExPASy Swiss-Prot
Match: CALM_COLTR (Calmodulin OS=Colletotrichum trifolii PE=3 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 2.052e-12
Identity = 43/137 (31.39%), Postives = 75/137 (54.74%), Query Frame = 3
Query:  294 MSADISLDMNYELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGYIPLEALISRVGNSSCEPACEPELKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKTGMG 704
            M+  ++ +   E  +A  L D+D DG +   EL  ++  LG + P++ E++ M++EVD + +G I     ++ +     +   E E++E F  FD D++G I+A EL  V T +G++L T D+   MI   D+ G G
Sbjct:    1 MADSLTEEQVSEFKEAFSLFDKDGDGQITTKELGTVMRSLGQN-PSESELQDMINEVDADNNGTIDFPEFLTMMARKMKDTDSEEEIREAFKVFDRDNNGFISAAELRHVMTSIGEKL-TDDEVDEMIREADQDGDG 135          
BLAST of FC932480 vs. ExPASy Swiss-Prot
Match: CALM_COLGL (Calmodulin OS=Colletotrichum gloeosporioides PE=2 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 2.052e-12
Identity = 43/137 (31.39%), Postives = 75/137 (54.74%), Query Frame = 3
Query:  294 MSADISLDMNYELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGYIPLEALISRVGNSSCEPACEPELKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKTGMG 704
            M+  ++ +   E  +A  L D+D DG +   EL  ++  LG + P++ E++ M++EVD + +G I     ++ +     +   E E++E F  FD D++G I+A EL  V T +G++L T D+   MI   D+ G G
Sbjct:    1 MADSLTEEQVSEFKEAFSLFDKDGDGQITTKELGTVMRSLGQN-PSESELQDMINEVDADNNGTIDFPEFLTMMARKMKDTDSEEEIREAFKVFDRDNNGFISAAELRHVMTSIGEKL-TDDEVDEMIREADQDGDG 135          
The following BLAST results are available for this feature:
BLAST of FC932480 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 143
Match NameE-valueIdentityDescription
CALM_APLCA1.571e-1232.85Calmodulin OS=Aplysia californica GN=CAM PE=2 SV=2[more]
CALMA_HALRO1.571e-1232.85Calmodulin-A OS=Halocynthia roretzi PE=1 SV=2[more]
CALM1_BRALA1.571e-1232.85Calmodulin-1 OS=Branchiostoma lanceolatum PE=2 SV=... [more]
CALM1_BRAFL1.571e-1232.85Calmodulin-1 OS=Branchiostoma floridae PE=2 SV=2[more]
CML1_ORYSI2.052e-1233.58Calmodulin-like protein 1 OS=Oryza sativa subsp. i... [more]
CALM_STRIE2.052e-1234.92Calmodulin OS=Strongylocentrotus intermedius PE=2 ... [more]
CALM_NEUCR2.052e-1231.39Calmodulin OS=Neurospora crassa GN=cmd-1 PE=1 SV=2[more]
CALM_MAGGR2.052e-1231.39Calmodulin OS=Magnaporthe grisea GN=CMD1 PE=3 SV=4[more]
CALM_COLTR2.052e-1231.39Calmodulin OS=Colletotrichum trifolii PE=3 SV=2[more]
CALM_COLGL2.052e-1231.39Calmodulin OS=Colletotrichum gloeosporioides PE=2 ... [more]

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Properties
Property NameValue
Genbank descriptionC34209A10EF PostHarveN Citrus clementina cDNA clone C34209A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932480 ID=FC932480; Name=FC932480; organism=Citrus clementina; type=EST; length=714bp
GAATTCATTCCCCCTTCTCCTTCTCTTTCCTCTTTTTCCCTTCACGAGAA
ACTCGAATTCGTCTTTTTTTTCTTCGCGTTTCGGAAATGAAACTCATCGA
GAAGCTCAGCCCGAAACGTCTCTTCCGGTCCAAGTCCAAGAAGGACCGGA
CCAGCGTTTCGCGTTCTGACCCATCATCGTTCAGCTCGTCCTCTACCTCC
GACTCGTCCACCCACAACAAGCTCGGTTCGGCGCCGGACAGAGTCGGGAC
GCCAACGAGTGTCTTACACGAGATATCGGGTGACTGGTCCGACATGTCGG
CCGATATCTCGCTAGATATGAACTACGAGCTCGTCCAGGCGTGTAAGTTG
CTCGACAGGGACAACGACGGGGTGGTGTTGAGAAGCGAGCTGGAGGCGCT
CTTGATCCGGCTCGGAGCGGACCCGCCGACCCAAGAGGAGGTCAAGTCGA
TGCTGAGCGAGGTGGATCGGGAGGGCGACGGGTATATACCCTTGGAGGCG
CTGATTAGCCGGGTCGGGAACTCGTCCTGCGAGCCGGCTTGTGAACCGGA
GCTCAAGGAGACGTTTGACTTCTTTGACGCGGATCACGATGGTAAGATCA
CGGCCGAGGAGTTGTTCGGTGTTTTCACCAAATTAGGGGACGAGCTGTGC
ACGTTAGACGACTGCCGGGGCATGATAGCGCTGGTGGATAAAACGGGGAT
GGGTTCGTCTGCTT
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