FC932480

Overview
NameFC932480
Unique NameFC932480
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length714
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932480 vs. ExPASy Swiss-Prot
Match: CML4_ORYSJ (Calmodulin-like protein 4 OS=Oryza sativa subsp. japonica GN=CML4 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.330e-11
Identity = 42/123 (34.15%), Postives = 66/123 (53.66%), Query Frame = 3
Query:  336 QACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGYIPLEALISRVGNSSCEPACEPELKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKTGMG 704
            +A  L D++ DG +   EL A+   LG +P T +E+  M+ EVD +G+G I  +  +S +     +   + ELKE F+  D D +G I+  EL  V T LG+++ T ++   MI   D  G G
Sbjct:   14 EAFLLFDKNGDGCITLEELAAVTRSLGLEP-TDQELNDMMREVDTDGNGIIDFQEFLSLIARKMKDGDGDEELKEAFEVLDKDQNGFISPTELRTVMTNLGEKM-TDEEVEQMIREADTDGDG 134          
BLAST of FC932480 vs. ExPASy Swiss-Prot
Match: CML22_ORYSJ (Probable calcium-binding protein CML22 OS=Oryza sativa subsp. japonica GN=CML22 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.330e-11
Identity = 48/140 (34.29%), Postives = 73/140 (52.14%), Query Frame = 3
Query:  327 ELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGYIPLEAL------ISRVGNSSCEPACEPE-------LKETFDFFDADHDGKITAEELFGVFTKLG-DELCTLDDCRGMIALVDKTGMG 704
            EL +  +L DR+ DG + R ELE  L +LG   P  +E+ ++++ +D  GDG + +E        I   G+ S +   + E       ++E F  FDA+ DG IT +EL  V   LG  +  T ++CR MI  VD+ G G
Sbjct:   92 ELARVFELFDRNGDGRITREELEDSLGKLGIPVPA-DELAAVIARIDANGDGCVDVEEFGELYRSIMAGGDDSKDGRAKEEEEEEDGDMREAFRVFDANGDGYITVDELGAVLASLGLKQGRTAEECRRMIGQVDRDGDG 230          
BLAST of FC932480 vs. ExPASy Swiss-Prot
Match: CML8_ARATH (Calmodulin-like protein 8 OS=Arabidopsis thaliana GN=CML8 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.737e-11
Identity = 45/133 (33.83%), Postives = 69/133 (51.88%), Query Frame = 3
Query:  306 ISLDMNYELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGYIPLEALISRVGNSSCEPACEPELKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKTGMG 704
            ++ D   E  +A  L D+D DG +   EL A +IR     PT++E+  +++E+D + +G I     ++ +     E   E ELKE F  FD D +G I+A EL  V   LG++L T ++   MI   D  G G
Sbjct:    6 LTKDQITEFKEAFCLFDKDGDGCITVEEL-ATVIRSLDQNPTEQELHDIITEIDSDSNGTIEFAEFLNLMAKKLQESDAEEELKEAFKVFDKDQNGYISASELSHVMINLGEKL-TDEEVEQMIKEADLDGDG 136          
BLAST of FC932480 vs. ExPASy Swiss-Prot
Match: CALM_CANAL (Calmodulin OS=Candida albicans GN=CMD1 PE=3 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 2.269e-11
Identity = 39/122 (31.97%), Postives = 64/122 (52.46%), Query Frame = 3
Query:  294 MSADISLDMNYELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGYIPLEALISRVGNSSCEPACEPELKETFDFFDADHDGKITAEELFGVFTKLGDELCTLD 659
            M+  +S     E  +A  L D+D+DG +   EL  ++  LG +P ++ E+  M++EVD   DG I     ++ +     +   E E+ E F  FD + DGKI+A EL  + T +G++L   D
Sbjct:    1 MAEKLSEQQIAEFKEAFSLFDKDSDGKITTKELGTVMRSLGQNP-SESELTDMINEVDVNSDGSIDFPEFLTMMARKMKDTDSEAEIAEAFKVFDRNGDGKISAAELRHLLTSIGEKLSDAD 121          
BLAST of FC932480 vs. ExPASy Swiss-Prot
Match: CATR_CHLRE (Caltractin OS=Chlamydomonas reinhardtii PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.963e-11
Identity = 41/126 (32.54%), Postives = 68/126 (53.97%), Query Frame = 3
Query:  315 DMNYELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGYIPLEALISRVGNSSCEPACEPELKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALVDK 692
            +   E+ +A  L D D  G +   EL+  +  LG +P  +EE+K M+SE+D++G G I  E  ++ +     E     E+ + F  FD D+ G IT ++L  V  +LG+ L T ++ + MIA  D+
Sbjct:   25 EQKQEIREAFDLFDTDGSGTIDAKELKVAMRALGFEPK-KEEIKKMISEIDKDGSGTIDFEEFLTMMTAKMGERDSREEILKAFRLFDDDNSGTITIKDLRRVAKELGENL-TEEELQEMIAEADR 148          
BLAST of FC932480 vs. ExPASy Swiss-Prot
Match: CALM_ACHKL (Calmodulin OS=Achlya klebsiana GN=CMD1 PE=3 SV=3)

HSP 1 Score: 68.9366 bits (167), Expect = 2.963e-11
Identity = 43/137 (31.39%), Postives = 73/137 (53.28%), Query Frame = 3
Query:  294 MSADISLDMNYELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGYIPLEALISRVGNSSCEPACEPELKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKTGMG 704
            M+  ++ +   E  +A  L D+D DG +   EL  ++  +G +P T+ E++ M++EVD +G+G I     ++ +     +   E E+ E F  FD D +G I+A EL  + T LG++L T ++   MI   D  G G
Sbjct:    1 MADQLTEEQIAEFKEAGSLFDKDGDGTITTKELGTVMRSVGQNP-TEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEILEAFQGFDKDGNGFISAAELRHMMTNLGEKL-TDEEVDEMIREADIDGDG 135          
BLAST of FC932480 vs. ExPASy Swiss-Prot
Match: CML1_ARATH (Calmodulin-like protein 1 OS=Arabidopsis thaliana GN=CML1 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.870e-11
Identity = 43/126 (34.13%), Postives = 65/126 (51.59%), Query Frame = 3
Query:  327 ELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGYIPLEALISRVGNSSCEPACEPELKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKTGMG 704
            E+ +     D D DG + ++E + +L  LG +    E+V  +   VD +GDG+I     I     S        +++ +F  FD + DGKI+AEE+  V  KLG E C+L+DC  M+  VD  G G
Sbjct:   50 EMRRVFSRFDLDKDGKISQTEYKVVLRALGQERAI-EDVPKIFKAVDLDGDGFIDFREFIDAYKRSG--GIRSSDIRNSFWTFDLNGDGKISAEEVMSVLWKLG-ERCSLEDCNRMVRAVDADGDG 171          
BLAST of FC932480 vs. ExPASy Swiss-Prot
Match: CML15_ORYSJ (Probable calcium-binding protein CML15 OS=Oryza sativa subsp. japonica GN=CML15 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.870e-11
Identity = 52/151 (34.44%), Postives = 70/151 (46.36%), Query Frame = 3
Query:  282 DWSDMSADISLDM---------NYELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGYIPL-EALISRVGNSSCEPACEPELKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKTGMG 704
            DWS   +D++              E  +  +  D + DG + R+EL AL   +G    T +EV  M+ E D +GDGYI L E             A E +L+  F  FDAD +G IT  EL  V   +G E  T+  CR MI  VD+ G G
Sbjct:   31 DWSPRPSDLAAAAAAKPRPPAAEDETERVFRKFDANGDGRISRAELAALFRSVG-HAVTDDEVARMMQEADSDGDGYISLGEFAAISAPPPGDAAAAEEDLRHAFGVFDADGNGVITPAELARVLRGIG-EAATVAQCRRMIDGVDRNGDG 179          
BLAST of FC932480 vs. ExPASy Swiss-Prot
Match: CETN2_MOUSE (Centrin-2 OS=Mus musculus GN=Cetn2 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.054e-11
Identity = 42/134 (31.34%), Postives = 71/134 (52.99%), Query Frame = 3
Query:  303 DISLDMNYELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGYIPLEALISRVGNSSCEPACEPELKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKTGMG 704
            +++ D   E+ +A  L D D  G +   EL+  +  LG +P  +EE+K M+SE+D+EG G +     ++ +     E   + E+ + F  FD D  GKI+ + L  V  +LG+ L T ++ + MI   D+ G G
Sbjct:   24 ELTEDQKQEIREAFDLFDADGTGTIDIKELKVAMRALGFEPK-KEEIKKMISEIDKEGTGKMNFSDFLTVMTQKMSEKDTKEEILKAFKLFDDDETGKISFKNLKRVAKELGENL-TDEELQEMIDEADRDGDG 155          
BLAST of FC932480 vs. ExPASy Swiss-Prot
Match: CATR_SCHDU (Caltractin OS=Scherffelia dubia PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.601e-11
Identity = 41/136 (30.15%), Postives = 71/136 (52.21%), Query Frame = 3
Query:  297 SADISLDMNYELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVDREGDGYIPLEALISRVGNSSCEPACEPELKETFDFFDADHDGKITAEELFGVFTKLGDELCTLDDCRGMIALVDKTGMG 704
            SA ++ +   E+ +A  L D D  G +   EL+  +  LG +P  +EE+K M++++D++G G I  E  +  +     E     E+ + F  FD D  GKI+ + L  V  +LG+ + T ++ + MI   D+ G G
Sbjct:   18 SAGLTEEQKQEIREAFDLFDTDGSGTIDAKELKVAMRALGFEPK-KEEIKKMIADIDKDGSGTIDFEEFLQMMTAKMGERDSREEIMKAFRLFDDDETGKISFKNLKRVAKELGENM-TDEELQEMIDEADRDGDG 151          
The following BLAST results are available for this feature:
BLAST of FC932480 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 143
Match NameE-valueIdentityDescription
CML4_ORYSJ1.330e-1134.15Calmodulin-like protein 4 OS=Oryza sativa subsp. j... [more]
CML22_ORYSJ1.330e-1134.29Probable calcium-binding protein CML22 OS=Oryza sa... [more]
CML8_ARATH1.737e-1133.83Calmodulin-like protein 8 OS=Arabidopsis thaliana ... [more]
CALM_CANAL2.269e-1131.97Calmodulin OS=Candida albicans GN=CMD1 PE=3 SV=2[more]
CATR_CHLRE2.963e-1132.54Caltractin OS=Chlamydomonas reinhardtii PE=1 SV=1[more]
CALM_ACHKL2.963e-1131.39Calmodulin OS=Achlya klebsiana GN=CMD1 PE=3 SV=3[more]
CML1_ARATH3.870e-1134.13Calmodulin-like protein 1 OS=Arabidopsis thaliana ... [more]
CML15_ORYSJ3.870e-1134.44Probable calcium-binding protein CML15 OS=Oryza sa... [more]
CETN2_MOUSE5.054e-1131.34Centrin-2 OS=Mus musculus GN=Cetn2 PE=1 SV=1[more]
CATR_SCHDU6.601e-1130.15Caltractin OS=Scherffelia dubia PE=2 SV=1[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34209A10EF PostHarveN Citrus clementina cDNA clone C34209A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932480 ID=FC932480; Name=FC932480; organism=Citrus clementina; type=EST; length=714bp
GAATTCATTCCCCCTTCTCCTTCTCTTTCCTCTTTTTCCCTTCACGAGAA
ACTCGAATTCGTCTTTTTTTTCTTCGCGTTTCGGAAATGAAACTCATCGA
GAAGCTCAGCCCGAAACGTCTCTTCCGGTCCAAGTCCAAGAAGGACCGGA
CCAGCGTTTCGCGTTCTGACCCATCATCGTTCAGCTCGTCCTCTACCTCC
GACTCGTCCACCCACAACAAGCTCGGTTCGGCGCCGGACAGAGTCGGGAC
GCCAACGAGTGTCTTACACGAGATATCGGGTGACTGGTCCGACATGTCGG
CCGATATCTCGCTAGATATGAACTACGAGCTCGTCCAGGCGTGTAAGTTG
CTCGACAGGGACAACGACGGGGTGGTGTTGAGAAGCGAGCTGGAGGCGCT
CTTGATCCGGCTCGGAGCGGACCCGCCGACCCAAGAGGAGGTCAAGTCGA
TGCTGAGCGAGGTGGATCGGGAGGGCGACGGGTATATACCCTTGGAGGCG
CTGATTAGCCGGGTCGGGAACTCGTCCTGCGAGCCGGCTTGTGAACCGGA
GCTCAAGGAGACGTTTGACTTCTTTGACGCGGATCACGATGGTAAGATCA
CGGCCGAGGAGTTGTTCGGTGTTTTCACCAAATTAGGGGACGAGCTGTGC
ACGTTAGACGACTGCCGGGGCATGATAGCGCTGGTGGATAAAACGGGGAT
GGGTTCGTCTGCTT
back to top